mRNA_Ecto-sp13_S_contig845.19829.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig845.19829.1
Unique NamemRNA_Ecto-sp13_S_contig845.19829.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig845.19829.1 vs. uniprot
Match: D7FMM3_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM3_ECTSI)

HSP 1 Score: 655 bits (1690), Expect = 1.080e-226
Identity = 491/582 (84.36%), Postives = 496/582 (85.22%), Query Frame = 1 
Query:  547 MEGGKNGSAFDRASLRGRGEDLLVIVLKRSSRAQSTEWLRFPRVLSPDAKCLLQKRQQCCEIRXXXXXXXXXXXXXXXXXXXXXXXXXXLEHAVEAGKGWLVEPLLAAGAGFAGAVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTPHRTPVKQPAGLDSAWAGSAPSTPASCSTAPPSLRPDGGEPSASSGCSRNVGSQASPSSPRCLSPGASSXXXXXXXCFTSSNGSDHXXXXRSPTAAAIASVTSDPLCLHRATMARDAGLMRELLAAGVDRNAVDLWDCTALHRAAEQERSAEHXXXXXXXXXXXXXXXXXXXXXXXXAAARGAETAVVDLXXXXSCLSDRGNNGDSPLHSAVRFLSLPTVRILLDSDADEAAKNNDGQTPRDVTGVHPDGRPLENQPGPVVPQKIVALLDAAVLRRKWKRRGWLVMLRARAQRQAALELVEAARTGCVVIVRKEDERVAAGGSDTEAAPCGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEPERSQSEFYELVGQTTLLTEEGVFQKVVQFL 2292
            MEGGKNGS FDRASLRGRGEDLLVIVLKRSSRAQSTEWLRFPRVLSPDAKCLLQKR+QCCEIRXXXXXXXXXXXXXXXXXXXXXXXXXXLEHAVEAGKGWLVEPLLAAGAG AGAVG          XXX                      XXXXXXXXXXXXXXXXXXXXXXXXX      HTPHRTPVKQ AGLD AWA SAPSTP SCST PPS+RPDGGEPSASSGCSRN GSQA PSSPRC SPGASS XXXXXX        DH     SPTAAAIASVTSDPLCLHRATMARDAGLMRELLAAGVDRNAVDLWDCTALHRAAEQERSAEHXXXXXXXXXXXXXXXXXXXXXXXXAAARGAETAVVDLXXXXSCLSDRGNNG     SAVRFLSLPTVRILLDSDADEAAKNNDGQTPR+VTGVHPDGRPLENQPGPVVP+KIVALLDAAVLRRKWKRRGWLVMLRARAQRQAALELVEAARTGCVVIVRKEDE VAAGGSD EA PC S   XXXXXXXXXXXXXXXXXX          VA PER+QSEFY LVGQTTLLTEEGVFQKVVQFL
Sbjct:    1 MEGGKNGSVFDRASLRGRGEDLLVIVLKRSSRAQSTEWLRFPRVLSPDAKCLLQKREQCCEIRXXXXXXXXXXXXXXXXXXXXXXXXXXLEHAVEAGKGWLVEPLLAAGAGLAGAVG----GGGRREXXXKGAGTAAVAVPGPGKPSCSGGGXXXXXXXXXXXXXXXXXXXXXXXXXASSSCGHTPHRTPVKQQAGLDFAWACSAPSTPPSCSTGPPSIRPDGGEPSASSGCSRNFGSQAPPSSPRCGSPGASSSXXXXXXXXXXXXXXDHASS-HSPTAAAIASVTSDPLCLHRATMARDAGLMRELLAAGVDRNAVDLWDCTALHRAAEQERSAEHXXXXXXXXXXXXXXXXXXXXXXXXAAARGAETAVVDLXXXXSCLSDRGNNGXXXXXSAVRFLSLPTVRILLDSDADEAAKNNDGQTPREVTGVHPDGRPLENQPGPVVPRKIVALLDAAVLRRKWKRRGWLVMLRARAQRQAALELVEAARTGCVVIVRKEDEGVAAGGSDAEARPCESGADXXXXXXXXXXXXXXXXXXDRDGCGGG--VAVPERNQSEFYHLVGQTTLLTEEGVFQKVVQFL 575
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig845.19829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMM3_ECTSI1.080e-22684.36Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig845contigEcto-sp13_S_contig845:567..2861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score661.0
Seed ortholog evalue5.2e-187
Seed eggNOG ortholog2880.D7FMM3
Preferred nameANKRD66
Model size2295
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0044464
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-23_000870.1
Cds size1749
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464114.474866-UTR-Ecto-sp13_S_contig845:566..11121681464114.474866-UTR-Ecto-sp13_S_contig845:566..1112Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig845 567..1112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464114.4874618-CDS-Ecto-sp13_S_contig845:1112..28611681464114.4874618-CDS-Ecto-sp13_S_contig845:1112..2861Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig845 1113..2861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig845.19829.1prot_Ecto-sp13_S_contig845.19829.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig845 1113..2861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig845.19829.1

>prot_Ecto-sp13_S_contig845.19829.1 ID=prot_Ecto-sp13_S_contig845.19829.1|Name=mRNA_Ecto-sp13_S_contig845.19829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=583bp
MEGGKNGSAFDRASLRGRGEDLLVIVLKRSSRAQSTEWLRFPRVLSPDAK
CLLQKRQQCCEIRRKGEDILEFVMARASDEQWCRWLRLPLEHAVEAGKGW
LVEPLLAAGAGFAGAVGRGGGGRREGGGKGAGTAAAAAAVPGPGKPSCGG
GGCSGGCGGGGSAPPSPSQESPAVSAPASSSPAHTPHRTPVKQPAGLDSA
WAGSAPSTPASCSTAPPSLRPDGGEPSASSGCSRNVGSQASPSSPRCLSP
GASSSPSPSSSCFTSSNGSDHASSSRSPTAAAIASVTSDPLCLHRATMAR
DAGLMRELLAAGVDRNAVDLWDCTALHRAAEQERSAEHVRLLLAAGLNVR
ARDMEGYSPLHFAAARGAETAVVDLLAAGSCLSDRGNNGDSPLHSAVRFL
SLPTVRILLDSDADEAAKNNDGQTPRDVTGVHPDGRPLENQPGPVVPQKI
VALLDAAVLRRKWKRRGWLVMLRARAQRQAALELVEAARTGCVVIVRKED
ERVAAGGSDTEAAPCGSGAGGGGESEKSQPEKGCGGGGGGVGDGCGGGVA
EPERSQSEFYELVGQTTLLTEEGVFQKVVQFL*
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mRNA from alignment at Ecto-sp13_S_contig845:567..2861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig845.19829.1 ID=mRNA_Ecto-sp13_S_contig845.19829.1|Name=mRNA_Ecto-sp13_S_contig845.19829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2295bp|location=Sequence derived from alignment at Ecto-sp13_S_contig845:567..2861+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGAGAGCGTTCAAGTCGGCTCGTAGGCCGTCCGCAGGAAAAATTCTGT
TGATTCTTACCGCCAACTGCAGTTTGGCATTCGTTGGCCGTTTCGGCGAC
GAGTTCCTCTCATGGAGCGTGATCTGTCCGCCCGTCGTCGTGAGGTGCAA
CAGCGTTTGTACAGCGGTACCCCCCCCGACTGATCCGTGCGTCAACCGTC
ATCCATTATCCTTTTCTTTGGCAAAAAAACAGTTGTAAATCATTGAGCCC
GTTGTCTTGCGCCTGGGAGTGCAACATTGGCCCGGCATCGATCCACACGA
CCCACAGCCTGACTAGTTATCTATTTGCCACCCACCCGAGTTTGCCGGCG
CTGATATGTTCTTCCTTCGATTCTTGCTTCCCCGCGCGTTGCCGTTCGCT
TCGCCCTTGGCGCCAGCTTGAGGAAACTAGACTGACTCTCTTGGAAGCCG
CTCCGAAGCGACCCGGACAGGCAAGCCCCCCCCCCCCCGCCCCCCCGGCG
AGCAGCCAGGGCTACAGCAGGGGCACACTCCGCCCCTCGTGGACTAATGG
AAGGGGGCAAGAACGGCAGCGCCTTCGACAGAGCCTCGCTTCGCGGCAGG
GGGGAAGACCTCCTCGTTATCGTCCTGAAACGCAGCAGCCGGGCCCAAAG
CACGGAGTGGCTCCGGTTCCCCAGGGTGCTCTCTCCGGACGCCAAGTGCC
TGCTGCAGAAGAGGCAGCAGTGCTGCGAGATCCGCCGCAAGGGCGAGGAC
ATCCTCGAGTTTGTCATGGCTCGGGCGTCGGACGAGCAGTGGTGCAGGTG
GCTGCGCTTGCCGTTAGAGCACGCCGTGGAGGCCGGCAAGGGGTGGTTGG
TCGAGCCGCTGCTTGCGGCCGGAGCGGGGTTCGCCGGCGCCGTCGGCCGC
GGCGGCGGCGGCCGAAGAGAAGGCGGAGGAAAGGGAGCGGGTACCGCGGC
GGCGGCGGCGGCGGTGCCGGGGCCCGGCAAGCCCAGCTGTGGCGGCGGCG
GTTGCAGCGGCGGTTGCGGCGGCGGTGGGTCCGCCCCGCCTTCCCCGTCA
CAGGAATCCCCCGCGGTTTCTGCACCGGCGTCCTCGTCGCCCGCCCACAC
GCCCCACCGCACCCCCGTCAAACAACCAGCGGGTCTGGATTCCGCGTGGG
CCGGCAGCGCTCCTTCCACGCCGGCGTCGTGCTCTACCGCGCCGCCTTCT
TTGCGGCCGGATGGAGGCGAGCCGTCAGCTTCGTCCGGCTGCAGCAGGAA
CGTTGGGAGCCAAGCATCACCGTCCTCTCCGCGGTGCCTTTCTCCAGGAG
CCAGCAGCTCCCCGTCTCCATCTTCTTCGTGTTTCACCTCCTCGAATGGG
TCCGACCACGCGTCGTCGTCGCGTTCCCCCACGGCCGCCGCCATCGCCAG
CGTAACCAGCGACCCCCTGTGCCTGCACCGCGCGACCATGGCCCGCGACG
CGGGCCTCATGCGCGAGCTCCTGGCCGCCGGAGTCGACCGGAACGCGGTC
GACCTCTGGGACTGCACGGCCTTGCACCGCGCGGCTGAGCAGGAGCGGTC
CGCGGAGCACGTGCGGCTTCTCCTGGCCGCGGGGCTGAACGTGCGGGCGC
GGGACATGGAGGGTTACTCGCCGCTCCACTTCGCAGCCGCCCGCGGCGCC
GAGACCGCGGTCGTGGACCTTCTCGCGGCCGGGTCTTGCCTGTCGGACCG
CGGCAACAACGGCGACAGCCCGCTGCATAGCGCGGTCCGGTTCCTGTCCC
TCCCGACCGTGCGCATCCTGCTGGACTCGGACGCGGACGAGGCGGCCAAG
AACAACGACGGTCAAACGCCGAGGGACGTGACCGGCGTCCACCCGGACGG
CCGGCCGCTGGAGAACCAGCCCGGCCCGGTCGTGCCGCAGAAGATCGTGG
CCCTGCTCGATGCCGCCGTGCTGCGGCGCAAGTGGAAGCGGCGCGGGTGG
CTCGTCATGCTCCGGGCCAGGGCCCAGAGGCAGGCGGCTCTCGAGCTGGT
CGAGGCCGCAAGGACCGGCTGCGTGGTGATCGTGAGAAAAGAGGACGAGC
GCGTCGCCGCGGGGGGCAGTGATACCGAAGCCGCACCGTGTGGGAGCGGG
GCTGGTGGCGGTGGCGAATCGGAGAAGAGCCAACCGGAGAAGGGGTGTGG
TGGTGGTGGTGGTGGTGTTGGTGATGGGTGCGGTGGTGGAGTGGCAGAGC
CAGAGCGAAGCCAGTCGGAGTTTTATGAGCTCGTGGGGCAAACGACTCTT
CTGACCGAGGAGGGCGTGTTCCAGAAGGTCGTGCAGTTTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig845:567..2861+

>mRNA_Ecto-sp13_S_contig845.19829.1 ID=mRNA_Ecto-sp13_S_contig845.19829.1|Name=mRNA_Ecto-sp13_S_contig845.19829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1749bp|location=Sequence derived from alignment at Ecto-sp13_S_contig845:567..2861+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGGGGGCAAGAACGGCAGCGCCTTCGACAGAGCCTCGCTTCGCGG
CAGGGGGGAAGACCTCCTCGTTATCGTCCTGAAACGCAGCAGCCGGGCCC
AAAGCACGGAGTGGCTCCGGTTCCCCAGGGTGCTCTCTCCGGACGCCAAG
TGCCTGCTGCAGAAGAGGCAGCAGTGCTGCGAGATCCGCCGCAAGGGCGA
GGACATCCTCGAGTTTGTCATGGCTCGGGCGTCGGACGAGCAGTGGTGCA
GGTGGCTGCGCTTGCCGTTAGAGCACGCCGTGGAGGCCGGCAAGGGGTGG
TTGGTCGAGCCGCTGCTTGCGGCCGGAGCGGGGTTCGCCGGCGCCGTCGG
CCGCGGCGGCGGCGGCCGAAGAGAAGGCGGAGGAAAGGGAGCGGGTACCG
CGGCGGCGGCGGCGGCGGTGCCGGGGCCCGGCAAGCCCAGCTGTGGCGGC
GGCGGTTGCAGCGGCGGTTGCGGCGGCGGTGGGTCCGCCCCGCCTTCCCC
GTCACAGGAATCCCCCGCGGTTTCTGCACCGGCGTCCTCGTCGCCCGCCC
ACACGCCCCACCGCACCCCCGTCAAACAACCAGCGGGTCTGGATTCCGCG
TGGGCCGGCAGCGCTCCTTCCACGCCGGCGTCGTGCTCTACCGCGCCGCC
TTCTTTGCGGCCGGATGGAGGCGAGCCGTCAGCTTCGTCCGGCTGCAGCA
GGAACGTTGGGAGCCAAGCATCACCGTCCTCTCCGCGGTGCCTTTCTCCA
GGAGCCAGCAGCTCCCCGTCTCCATCTTCTTCGTGTTTCACCTCCTCGAA
TGGGTCCGACCACGCGTCGTCGTCGCGTTCCCCCACGGCCGCCGCCATCG
CCAGCGTAACCAGCGACCCCCTGTGCCTGCACCGCGCGACCATGGCCCGC
GACGCGGGCCTCATGCGCGAGCTCCTGGCCGCCGGAGTCGACCGGAACGC
GGTCGACCTCTGGGACTGCACGGCCTTGCACCGCGCGGCTGAGCAGGAGC
GGTCCGCGGAGCACGTGCGGCTTCTCCTGGCCGCGGGGCTGAACGTGCGG
GCGCGGGACATGGAGGGTTACTCGCCGCTCCACTTCGCAGCCGCCCGCGG
CGCCGAGACCGCGGTCGTGGACCTTCTCGCGGCCGGGTCTTGCCTGTCGG
ACCGCGGCAACAACGGCGACAGCCCGCTGCATAGCGCGGTCCGGTTCCTG
TCCCTCCCGACCGTGCGCATCCTGCTGGACTCGGACGCGGACGAGGCGGC
CAAGAACAACGACGGTCAAACGCCGAGGGACGTGACCGGCGTCCACCCGG
ACGGCCGGCCGCTGGAGAACCAGCCCGGCCCGGTCGTGCCGCAGAAGATC
GTGGCCCTGCTCGATGCCGCCGTGCTGCGGCGCAAGTGGAAGCGGCGCGG
GTGGCTCGTCATGCTCCGGGCCAGGGCCCAGAGGCAGGCGGCTCTCGAGC
TGGTCGAGGCCGCAAGGACCGGCTGCGTGGTGATCGTGAGAAAAGAGGAC
GAGCGCGTCGCCGCGGGGGGCAGTGATACCGAAGCCGCACCGTGTGGGAG
CGGGGCTGGTGGCGGTGGCGAATCGGAGAAGAGCCAACCGGAGAAGGGGT
GTGGTGGTGGTGGTGGTGGTGTTGGTGATGGGTGCGGTGGTGGAGTGGCA
GAGCCAGAGCGAAGCCAGTCGGAGTTTTATGAGCTCGTGGGGCAAACGAC
TCTTCTGACCGAGGAGGGCGTGTTCCAGAAGGTCGTGCAGTTTTTGTGA
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