mRNA_Ecto-sp13_S_contig8443.19824.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8443.19824.1
Unique NamemRNA_Ecto-sp13_S_contig8443.19824.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: D7FPE3_ECTSI (Set and mynd domain containing n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE3_ECTSI)

HSP 1 Score: 1056 bits (2732), Expect = 0.000e+0
Identity = 569/590 (96.44%), Postives = 570/590 (96.61%), Query Frame = 1 
Query:    1 ALLRSNQSPSIGARAMRYPGGSQTQVVAETSETGSXXXXXXXXXXXXXXXXSTTISYGDTASPTATAGRTLPLTVPYRHARITWSEPNSKNNGSSKHGSGCSXXXXXXXXCARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGXXXXXXGGTLEPDVIREAQARLNDGGLEVSAEEIQTVHRRQELRRNFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNACFHSRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCEDDTKPGASSGDWRVTKMLHNIEALLENAQNRSVREIQAGLRAQLEQGLQMLLAGPDLSSRLQLQLAMRIDEVATRRRMHGSLRFRSAQELADRLVSQGLDTGYTADLRFTMHREALRWAADARVEGSYRRAEQLTRASRDSLEEAIKVAAVCLGEGHPKTRALVECLRRFSPFA 1770
            ALLRSNQSPSIGARAM +PGGSQTQVVAETS    XXXXXXXXXXXX    STTISYGDTASPTATAGRTLPLTVPYRHARITWSEPNSKNNGSSKHGSGCSXXXXXXX CARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEG      GGTLEPDVIREAQARLNDGGLEVSAEEIQTVHRR  LRRNFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNACFHSRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCEDDTKPGASSGDWRVTKML NIEALLENAQNRSVREIQAGLRAQLEQGLQMLLAGPDLSSRLQLQLAMRIDEVATRRRMHGSLRFRSAQELADRLV QGLDTGYTADLRFTMHREALRWAADARVEGSYRRAEQLTRASRDSLEEAIKVAAVCLGEGHPKTRALVECLRRFSPFA
Sbjct:    4 ALLRSNQSPSIGARAMGFPGGSQTQVVAETSXX-XXXXXXXXXXXXXIGSSSTTISYGDTASPTATAGRTLPLTVPYRHARITWSEPNSKNNGSSKHGSGCSXXXXXXX-CARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGGGEGSGGGTLEPDVIREAQARLNDGGLEVSAEEIQTVHRR--LRRNFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNACFHSRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCEDDTKPGASSGDWRVTKMLQNIEALLENAQNRSVREIQAGLRAQLEQGLQMLLAGPDLSSRLQLQLAMRIDEVATRRRMHGSLRFRSAQELADRLVRQGLDTGYTADLRFTMHREALRWAADARVEGSYRRAEQLTRASRDSLEEAIKVAAVCLGEGHPKTRALVECLRRFSPFA 589
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BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: A0A6H5KH60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH60_9PHAE)

HSP 1 Score: 531 bits (1367), Expect = 8.060e-182
Identity = 306/313 (97.76%), Postives = 310/313 (99.04%), Query Frame = 1 
Query:    1 ALLRSNQSPSIGARAMRYPGGSQTQVVAETSETGSXXXXXXXXXXXXXXXXSTTISYGDTASPTATAGRTLPLTVPYRHARITWSEPNSKNNGSSKHGSGCSXXXXXXXXCARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGXXXXXXGGTLEPDVIREAQARLNDGGLEVSAEEIQTVHRRQEL 939
            A LRSNQSPSIGARAM +PGGSQTQVVAETSETGSXXXXXXXXXXXXXXXXSTTISYGDTASPTATAGRT+PLTVPYRHARITWSEPNSKNNGSSKHGSGCSXXXXXXX CARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVA+QAAALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCG+VEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGXXXXXXGGTLEPDVIREAQARLNDGGLEVSAEEIQTVHRRQEL
Sbjct:    4 AFLRSNQSPSIGARAMGFPGGSQTQVVAETSETGSXXXXXXXXXXXXXXXXSTTISYGDTASPTATAGRTIPLTVPYRHARITWSEPNSKNNGSSKHGSGCSXXXXXXX-CARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVARQAAALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGMVEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGXXXXXXGGTLEPDVIREAQARLNDGGLEVSAEEIQTVHRRQEL 315
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: D7FPE5_ECTSI (SET and MYND domain containing 1b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.120e-31
Identity = 118/342 (34.50%), Postives = 163/342 (47.66%), Query Frame = 1 
Query:  334 ARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRPAFCRRCLTLLDK-SLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGLGEEQLSELGRGDN-----AAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGXXXXXXGGTLEPDVIREAQARLND-GGLEVSAEEIQTVHRRQELRRNFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNACFH--SRRAGPEGPPL-ELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRC------EDDTKPGASSGDWRVTKMLHNI 1311
            ARR   LD R +VR +P   KRGRG+FA+  +PAGTEV+    AAA+  DR R   C  CL   D    L  C      FC      AA  + T   T G V G+      EL +  N     +   + D LRL  +   RR AGL D+ EW  ++ L   ++E         +L P  + +            +S E++Q ++RR  + RN HTV P    +    +V G+FP  +LVNHSC PN  FH  +  + PEG P+ +  LR   ++ AG+E+C SYL+  +   T   RR+LL   WGF C C RC      E   +   +  D R  KML  +
Sbjct:   28 ARRTANLDARVEVRFDP---KRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFC------AACKKAT---TVGGVSGVHNSATCELTKELNTICATSGGIDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEAHTM-----SLAPAELHKCTRLFKTLVDTNISDEDVQAMYRR--ITRNAHTVSPN-TSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVTESSSPEGRPVVKQVLRSIRNIRAGDELCYSYLSSGSAVGTVSERRDLLMG-WGFRCACARCLSEAEEEKRLRRQRTPIDERALKMLERL 348
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BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: A0A2J6QYW0_9HELO (MYND-type zinc finger protein samB n=1 Tax=Hyaloscypha variabilis F TaxID=1149755 RepID=A0A2J6QYW0_9HELO)

HSP 1 Score: 70.1 bits (170), Expect = 9.310e-9
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1 
Query: 1012 PAASLVNHSCEPNACFHSRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCED 1251
            P  +L+NHSCEPNA +       EG   EL +R + D++ GEEV  SYL    D    EGRR+LLQ +WG  C CP C +
Sbjct:  259 PFVALINHSCEPNAHYVF-----EG--TELRVRASRDIAKGEEVTFSYLGQVGDY---EGRRQLLQRLWGIRCTCPVCAE 328
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: F2U089_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U089_SALR5)

HSP 1 Score: 68.9 bits (167), Expect = 1.560e-8
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:  994 TVVGVFPAASLVNHSCEPNACFH----SRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCE 1248
            T  G +   +  NHSC PNAC +    S RA    P +   LR  +D++ GEEVC+SY+    D  T   RRE LQ ++ F+C CPRCE
Sbjct:  171 TTYGFYLRMAFCNHSCRPNACQYIDPNSTRARLNSPSI--VLRAVSDIAEGEEVCISYI-ELMD--TTPERREALQELYYFTCQCPRCE 254
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BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: A0A6G1GRM6_9PEZI (SET domain-containing protein n=1 Tax=Aulographum hederae CBS 113979 TaxID=1176131 RepID=A0A6G1GRM6_9PEZI)

HSP 1 Score: 68.6 bits (166), Expect = 1.740e-8
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 
Query: 1003 GVFPAASLVNHSCEPNACFHSRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCE 1248
            G+FP AS +NHSC PNA +       EG    + +R T  + AGEE+ ++Y+      +TKE RRELL   +GF C C  CE
Sbjct:  195 GLFPTASRLNHSCLPNAYWSFNTTDDEGMEGLMEVRATHVIQAGEEILITYVP---TLSTKEERRELLWEGYGFECHCVACE 273
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: A0A812RGT9_9DINO (ATXR2 protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812RGT9_9DINO)

HSP 1 Score: 66.2 bits (160), Expect = 4.870e-8
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1 
Query: 1000 VGVFPAASLVNHSCEPNACFHSRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCEDDTK 1260
            +G+F    L NHSC PNA FH+   G        ALR    +++GEEVC+SY+      +  + RR ++QN +GF C C RC ++++
Sbjct:  210 LGLFFWLHLANHSCCPNAFFHTHTQGGSAQATLYALR---PLASGEEVCISYVDGQTLLSPVQVRRRIIQNQFGFLCVCSRCREESR 293
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: A0A433Q0W4_9FUNG (SET domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433Q0W4_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 5.310e-8
Identity = 76/313 (24.28%), Postives = 134/313 (42.81%), Query Frame = 1 
Query:  397 RGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIE-----IDDLVLPEDEGXXXXXXGG-----------TLEPDVIR-EAQARLNDGGLE--VSAEEIQTVHRRQELRRNFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNA--CFHSRRAGPE------GPPL-ELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCED 1251
            +GR + A  ++P+G+ +L      +     YR  FC  CL  +D+ + ++C  C   +C   C + A   G H   CG+     ++ L EL  GDN  +     L  T           +D  ++IE     +D+L L   E                    ++EP +++ +AQ   N  G++  ++  +  +V++R ++                     GV+ AAS++NHSC PNA   +  RR+  E      G  + E+ +  + +V  GE +C+SY         +E +REL +  + F C+C  C +
Sbjct:   80 KGRYLVAACSIPSGSIILREMPYVSKLLLTYRGQFCDNCLREVDEKVQVRCNGCSVIYCSPNCEVEARAVG-HGFLCGI-----DQSLFELV-GDNGVSCIKTYLICTQPKEPAPTNLKNDISDFIEGIPDLVDNLHLRTPESIQSYLTTAIFLTTIFNLPSSIEPTLVKIQAQLACNIFGIKRLINVSDA-SVNKRDDVAVG-----------------AGVYLAASMMNHSCSPNAMAAWGVRRSAKEKKGDGGGIDMREMVVVMSREVRKGEPICISYGPQLGKVPVEERKRELAEKYF-FDCECEVCRN 366
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: A0A812Z6X7_9DINO (SMYD2 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Z6X7_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-7
Identity = 48/136 (35.29%), Postives = 61/136 (44.85%), Query Frame = 1 
Query: 1006 VFPAASLVNHSCEPNACFHSRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCEDDTKPGASSGDWRVTKMLHNIEALLENAQNRSVREIQAGLRAQLEQGLQMLLAGP 1413
            +FPA S+ NHSC PNA     + G       L LR    +S GEEVC++Y     D       R+ L   WGF C+CPRCED+     S   +R   +L N       A       +Q  LRA LE  +   L  P
Sbjct:  434 IFPAVSMANHSCLPNALV--LKCGEA-----LLLRARRVISQGEEVCINYF----DVLKPLAERQKLCQSWGFVCECPRCEDEKSIDESK--FRAISILMNQLRSPLAAAPPGAAPLQVALRA-LEDSVAASLGSP 555
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BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Match: A0A482R4M8_9EURY (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R4M8_9EURY)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-7
Identity = 85/313 (27.16%), Postives = 124/313 (39.62%), Query Frame = 1 
Query:  400 GRGIFA------VEAVPAGTEVLVAKQAA--ALPRDRYRPAFCRRCLTLLDKSLLIKCRRCEDR-FCGKECVIAA-AGEGTHEVTCGLVEGLGEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPE--DEGXXXXXXGGTLEPDVIREAQARLNDGGLEVSAE------EIQTVHRRQELRRNFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNA-------------CFHSRRAGPEGPPLELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRC 1245
            GRG+FA         +PAGT +L    AA  +LP   Y       C T + +    +C RC+   +C + C +A   GEG H   C     L            +A      I +L  + + +     +  +  +E   + +P   D              D + EA    +D  L V+ E      E   V   +   R F       +  L+ P   GVFPA +L+NHSC PN                 ++   P   PL    R T  VSAGE++C SY+     AAT++ RR  LQ+ +GF+C C  C
Sbjct:   37 GRGVFARATDAAARCMPAGTLILANAPAAVASLPTSGY-------CDTCILQRAPNRCARCKVACYCSRACQLAGWKGEG-HAAACTSTAALSHSL------PHHALVKLKTIQKLMTKSLLKSAFTATSVK--LETHGVYVPSWADVAAQATLPARAAVGDDV-EAHGAESDALLRVALENKWVSSEPGLVEEARHALRTFDCNNFMVVDDLMHPRGAGVFPAGALLNHSCAPNCVPMYLPSTHPEVVALQAKDMPPLVAPLVQVFRTTRAVSAGEQLCHSYVEL---AATQQQRRHELQDAYGFTCCCTVC 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8443.19824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPE3_ECTSI0.000e+096.44Set and mynd domain containing n=1 Tax=Ectocarpus ... [more]
A0A6H5KH60_9PHAE8.060e-18297.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPE5_ECTSI3.120e-3134.50SET and MYND domain containing 1b n=1 Tax=Ectocarp... [more]
A0A2J6QYW0_9HELO9.310e-946.25MYND-type zinc finger protein samB n=1 Tax=Hyalosc... [more]
F2U089_SALR51.560e-842.70Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A6G1GRM6_9PEZI1.740e-842.68SET domain-containing protein n=1 Tax=Aulographum ... [more]
A0A812RGT9_9DINO4.870e-837.93ATXR2 protein n=5 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A433Q0W4_9FUNG5.310e-824.28SET domain-containing protein n=1 Tax=Endogone sp.... [more]
A0A812Z6X7_9DINO1.030e-735.29SMYD2 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A482R4M8_9EURY1.030e-727.16SET domain-containing protein-lysine N-methyltrans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8443contigEcto-sp13_S_contig8443:1..5126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1033.5
Seed ortholog evalue3.8e-299
Seed eggNOG ortholog2880.D7FPE3
Model size2311
KEGG koko:K11426
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-14_004620.1
Cds size1728
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8443.19824.1prot_Ecto-sp13_S_contig8443.19824.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8443 46..4588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464114.0235174-UTR-Ecto-sp13_S_contig8443:0..451681464114.0235174-UTR-Ecto-sp13_S_contig8443:0..45Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8443 1..45 +
1681464114.1036823-UTR-Ecto-sp13_S_contig8443:4588..51261681464114.1036823-UTR-Ecto-sp13_S_contig8443:4588..5126Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8443 4589..5126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464114.0357566-CDS-Ecto-sp13_S_contig8443:45..9351681464114.0357566-CDS-Ecto-sp13_S_contig8443:45..935Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8443 46..935 +
1681464114.047194-CDS-Ecto-sp13_S_contig8443:2061..23141681464114.047194-CDS-Ecto-sp13_S_contig8443:2061..2314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8443 2062..2314 +
1681464114.066683-CDS-Ecto-sp13_S_contig8443:3174..33291681464114.066683-CDS-Ecto-sp13_S_contig8443:3174..3329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8443 3175..3329 +
1681464114.0825655-CDS-Ecto-sp13_S_contig8443:3800..39901681464114.0825655-CDS-Ecto-sp13_S_contig8443:3800..3990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8443 3801..3990 +
1681464114.092906-CDS-Ecto-sp13_S_contig8443:4348..45881681464114.092906-CDS-Ecto-sp13_S_contig8443:4348..4588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8443 4349..4588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8443.19824.1

>prot_Ecto-sp13_S_contig8443.19824.1 ID=prot_Ecto-sp13_S_contig8443.19824.1|Name=mRNA_Ecto-sp13_S_contig8443.19824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=576bp
MRYPGGSQTQVVAETSETGSGDGGGGGGDGGDSGSSSTTISYGDTASPTA
TAGRTLPLTVPYRHARITWSEPNSKNNGSSKHGSGCSGGGGGGGSCARRR
GQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRP
AFCRRCLTLLDKSLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGL
GEEQLSELGRGDNAAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVL
PEDEGEGEGSGGGTLEPDVIREAQARLNDGGLEVSAEEIQTVHRRQELRR
NFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNACFHSRRAGPEGPPL
ELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRC
EDDTKPGASSGDWRVTKMLHNIEALLENAQNRSVREIQAGLRAQLEQGLQ
MLLAGPDLSSRLQLQLAMRIDEVATRRRMHGSLRFRSAQELADRLVSQGL
DTGYTADLRFTMHREALRWAADARVEGSYRRAEQLTRASRDSLEEAIKVA
AVCLGEGHPKTRALVECLRRFSPFA*
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mRNA from alignment at Ecto-sp13_S_contig8443:1..5126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8443.19824.1 ID=mRNA_Ecto-sp13_S_contig8443.19824.1|Name=mRNA_Ecto-sp13_S_contig8443.19824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8443:1..5126+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACTCCTCCGATCGAACCAATCTCCGAGCATCGGTGCTCGAGCGATGAG
GTATCCGGGCGGCAGCCAAACCCAAGTCGTGGCCGAGACCTCCGAGACCG
GCAGTGGCGACGGCGGCGGCGGCGGCGGTGACGGTGGTGACAGCGGTAGC
AGCTCCACCACCATCAGTTACGGCGACACCGCCTCACCAACAGCCACCGC
AGGGCGAACGCTCCCACTTACCGTACCCTACCGACACGCCCGCATAACGT
GGTCGGAGCCGAACAGCAAGAACAACGGCAGCAGCAAACATGGCAGCGGT
TGCAGCGGCGGCGGCGGCGGCGGCGGCAGCTGCGCTCGTCGCAGAGGCCA
GCTCGACCCGCGCTTCCAGGTTCGGCGCAATCCCGCGCGCCCGAAGCGCG
GCCGCGGGATCTTCGCCGTGGAGGCGGTGCCCGCCGGGACCGAGGTACTG
GTCGCGAAGCAGGCGGCCGCCCTGCCCCGGGACCGCTACCGGCCGGCCTT
CTGCCGGCGCTGCCTAACCCTGCTGGACAAGTCCCTGCTGATCAAGTGCC
GGCGTTGCGAGGACCGTTTCTGCGGGAAGGAGTGCGTGATAGCGGCGGCC
GGGGAAGGCACGCACGAGGTGACCTGCGGGCTGGTCGAGGGGCTAGGGGA
GGAGCAGCTCTCGGAACTGGGGCGGGGAGACAACGCCGCGGCGACGGAGA
CGGACATCCTTCGGCTGACGGTAGAGTGCATGTCCCGGAGAGGGGCCGGG
CTTAGCGACGAGGAGGAGTGGATTGAGATCGATGATTTGGTTCTTCCGGA
AGACGAGGGTGAAGGAGAGGGCAGCGGCGGCGGTACGTTGGAGCCCGACG
TGATCCGAGAAGCACAGGCCAGGCTGAACGACGGGGGGCTGGAGGTGTCC
GCGGAGGAGATTCAGACAGTGCATCGCAGGCAAGAGTTTTGGGGGGGGGG
GGGATGGGGTGTAATCATTGTCGCGCATGCCGTAGTCGTTAGACCATTGA
CCTCGCGTCCCAACAAGGCCGGGTTGGAGCACAGCGGGTCATCACCGGAC
CAGGCTCTCACATCACCAAGCGCGAAGCACCGTGAGGTATTCGGCGAGCC
ACAATCAGGAAGCTTCTCGTTTTAACGGGGTTGTGGGATAGACGTTGCTG
CAAGAATCTCGTGTCCTGGGTGGGCCACTAGGTTCCCTCAAGTGTACCCT
TCTTTCGTTCTCCCGAGGCGTTCCTTCTTGTCGTCATGGCGGAGTGGGTC
ATCGCATGATTGGACGGCTTCGAGATACTGCTCGCCGCCGACTCTTACTT
GACTCGATGGAGTCGCGTTTGTACATGTGGTGCGGTTTAGGCACTTGCGA
CTTTGGGGTAAGAAACTGTGGTGAAGGACTGGTGATCTTTGAAATGTCGA
TTTGACATATCCTGAGTGCGCGTTGAGGTCGTCTCTGTGCGTATGGAACT
CGTCCAGTAGAAAACGTGAGATTTTTCTCGCGAGGTTTCGTGTGAAAAGG
GAGAGAGTAGCACAGCCTTTCCTGGAGGCCGTCGGGCGGAAATTTCCCCG
CCGCCCTCGCTGTTGACTTATTTCTTTTACTCGTTCGAAACGGCGAAACG
ATGTGCCATGGCAGCGCAGATAAGCCCACGGGCACAGAGTACAGGCACTA
ATTACCACGCAGTAGCCACGTCCATCTGCCTCTACGTTTGCCGCACATCA
CCCCTGTCCCACCCCTGGTCCTCTAGAAAGGAAAACAACGGGGTGTCGAT
GGGTGTTGAAAATGCCCTGAGTACTTTGGGAGCAACTGATGCCTCTGTCT
CGGACTTGGTCTTGATTGATCAAACTACTGTTGGATGGAGCATCTAAGCC
AAGGCTTTCCGACTGAGGGAATGAACGCTCCGGTCCTGTTGGCCAGAAAG
GAGGACGCGCTTCGTGCCACCACCCACCTTTTGTTGTCCTTTTGGTTTTT
GCTCATCGCAAAGTAGTACACATGTGGAGGGCGCCCCCCACTCTCTCACT
TAATCCCACCCATCCCAGTCCAATGAGCTCAGCTCCAGACTCCCCCTACC
CCTCCTTCCAGGCTCCGCCGCAATTTCCACACCGTGCAGCCGGAACCGCT
GGGCAGGCTCCTTCCGCCCACCGTGGTCGGTGTCTTCCCCGCGGCATCTC
TAGTGAATCACTCTTGCGAGCCGAACGCTTGCTTCCACTCGCGCCGCGCG
GGCCCCGAGGGGCCGCCGCTGGAGCTGGCCCTAAGGTGCACGACAGACGT
CTCCGCGGGGGAGGAGGTCTGCGTGTCTTATTTGGCCCACTGTGCGGATG
CGGCGACGAAGGAGGTGGGGGGGGGTACTCTCAAGTTGCTTTGCATGCCT
CTACTGGTACCGGTTAGACCCCGCGGTCCTTGAGAGGACGGAGTATTGTT
CCCACAAGACCGTTTACCGATGGCCAATGGCTCGTTCATACTGCTGTGCT
AAATAACGGTGGTGGAATTTTTGAAGTTTGAGTCGTTGCAGCTTGTGTTT
TGCTCCCCCTTTCTTATGATGCGACGTGGCATGTATGTTGTGACGTTCTC
CGGGTTGTTTGTTCGACTGAGGTGAGGCTGAACTAGTGCCTCGATCCGTG
CCGTAGGTTGTACTGAGGTACCACACGCTCTGGACCGATTGTCAAAGCTC
GGATACTCTGCAGCGACAAAAGTTACGCTGCCCGAAGTGACGGCGTTTGG
AACCGCCTCGTCAAGAGCTTTCCAACAACTTATCGTTTGATTGTGACAAG
CCTCTTCGTCGTCGAGTATTCGAGTTTGGAAATTAGGTCCAGGGGCTGTG
GTATCTCCTTCAGCCTACTTATCGAGTTTGGAAAATAAGTCCAGGGGGTG
CGATATCTTGTTCAACCTACCGTGTGTGCTGGAATGCAGAGAGTGCGGGT
CGAGGAAAGAAGCAGCACGTGGTCGGGAATAGAGACGCAGACGTCGATTG
GTGCGTAGTAAACCACAGCGAGATGTCGGCCTCAGTTACTCGGCCAAAGA
AGCAAACAAGCAGCCATTCCACCCGCTTCACGCTATTGGTTTTTCTTCGA
GAAGACAAACAGCCGGTGAGGTCGTGCTCGGCAGACATGCTGTGTTGTGC
CGAATCGTCGGTCGGTGCCAAACCCCGGTCGTTGTGCGCCTGGCCTCGTC
CACGCCCGCCGCCGCCATAACCAGGGTCGCCGAGAGCTGCTGCAAAACGT
GTGGGGCTTCTCGTGCGACTGCCCGCGGTGCGAGGACGACACCAAGCCGG
GGGCTTCCTCGGGAGACTGGCGAGTGACGAAGATGCTACATAATATTGAG
GCCTTGTTGGAGAACGCGCAAAACAGAAGGTGAGCGAGCGAAGATCTCGA
CGCGTTTTCGGCCAGTATCTCGGTACGGTCCGGTGTTCATGTCGGTTCCC
GTCGAGGACCACGTATGCTCTCGTCACTAACGATGATATTCTCTGCGTAG
ACGCCTGATAAATCGATCAACGAACCGATTGGGGCCCCGGCCTCAGCACC
CTCACACGCACGAACATTTTACGCCTAGCCGTCCCGAAACCCGCCTACGC
TGCCCCTTTCCTAAAGTAAACAATTAACAAACCTTGGGGGCCCGCCCGAA
CCCCCCCCCCCCCCCCCCCCCTCACGGCGCTTCGCGCTTGGTGATGTGAA
AGCCTGGTCCGGTGAGAACCCAGCGTACTCCGTCCCGGCTTTGTAGGGAT
GCGAGGTCAATAGTCTAACGACTACGGCATGCACGACTTTGAGTACACCC
ACCCATCCACCCACCCCGGAAAATACACGCCTTTTTCGTTTGTTGTTCAG
CGTACGAGAGATCCAGGCCGGTTTGCGGGCACAGCTAGAGCAGGGTCTGC
AGATGCTCCTAGCAGGGCCCGACCTGTCCTCCCGCTTACAGCTGCAGCTG
GCGATGCGCATCGACGAGGTGGCCACCCGCCGGAGGATGCACGGCTCTCT
CCGGTTCCGATCGGCGCAGGAGCTGGCGGATAGGCTGGTGGTGAGAGAGA
GAGTGAGAGCCAGAGGTTGACTTGGCTGGCTTGTAGTCTAGGTATGCTCT
ACGCCATGACTTGTAGTCTAGTGGATATGGTACGCCTTTTCTGTCTTTTA
ATAGCGGTTGGGTGCGCTCGGCCGGTGTGAGGTGTGCGGGTATTTCTGTG
CTTTGCTCCTTCCGCTGTAAATTCTAAGACGGAGCTTTTATCGCTTGTCA
ACGTCCGGCGCGATTGCCCCGCTTTCCCGTCCTCGCATTCCTCCCAAGAC
AGCAGCGTCTCAATCATTCCGTGGGCCGTGTGCGCCGCATGGGTGTCGTG
ATGTGCTTGAACTTCTGTCTATCCTTTTGCGTGTGTTTTTCTTGGTAGAG
CCAAGGCCTCGATACCGGCTACACCGCAGACCTCCGCTTCACAATGCACC
GGGAGGCCTTACGGTGGGCGGCGGACGCGAGGGTCGAGGGGAGCTATCGC
CGGGCGGAGCAGCTGACGCGGGCGTCGCGCGACAGCCTCGAGGAGGCGAT
CAAGGTCGCCGCCGTTTGTCTCGGGGAGGGCCACCCCAAGACGAGGGCCC
TCGTGGAGTGCTTGAGACGCTTCTCTCCTTTCGCGTAGCGGCGTTGTTGT
GTGGCGCGGCGGCAGCAGCTTTCGTGGCGGCTTTGTTTGCTGGTGTCGCA
TGTCAACAAGAGTAATAGTAGTAATGATGCTGTGCGTAGACTACCACATT
AGTGGATGGCCTGTTGTAGGCAGGAGAGAGCAGAAGCCTGTGCCTGTTCG
AAGCCCCGACATGGGGTCAAAAGAGAGACGGAGAAGGGAGTGATGGGTGA
TGGTACGGTTGTTGGAATGCTGGGTGGTGATACCGTGTGTACGATGCTGG
TGGTTGAGAGAGGACGGGAGGAGTGGCGTACTGGCAAGAAAAATGGCTGT
TTTTCGGTTTGTTTGCCGTGCCCACCGCTCTCTGCGTGTTGTGCGTCCCG
ATATATTGGGCGACACGCATCGTTTCTCCAATGCCCTCAAGGGCATGGCA
GTTTGAAACGCTTGGCTACGCTCAGAGATCGTGAGGTTGTGATTTGTTCC
CCTCCGCGATGGCGTCCTTTCGTCGTCAAGTCGGACAGAGGTACGGACGG
GTGCAGCTGACGCGTGTGATGCATCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8443:1..5126+

>mRNA_Ecto-sp13_S_contig8443.19824.1 ID=mRNA_Ecto-sp13_S_contig8443.19824.1|Name=mRNA_Ecto-sp13_S_contig8443.19824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8443:1..5126+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTATCCGGGCGGCAGCCAAACCCAAGTCGTGGCCGAGACCTCCGA
GACCGGCAGTGGCGACGGCGGCGGCGGCGGCGGTGACGGTGGTGACAGCG
GTAGCAGCTCCACCACCATCAGTTACGGCGACACCGCCTCACCAACAGCC
ACCGCAGGGCGAACGCTCCCACTTACCGTACCCTACCGACACGCCCGCAT
AACGTGGTCGGAGCCGAACAGCAAGAACAACGGCAGCAGCAAACATGGCA
GCGGTTGCAGCGGCGGCGGCGGCGGCGGCGGCAGCTGCGCTCGTCGCAGA
GGCCAGCTCGACCCGCGCTTCCAGGTTCGGCGCAATCCCGCGCGCCCGAA
GCGCGGCCGCGGGATCTTCGCCGTGGAGGCGGTGCCCGCCGGGACCGAGG
TACTGGTCGCGAAGCAGGCGGCCGCCCTGCCCCGGGACCGCTACCGGCCG
GCCTTCTGCCGGCGCTGCCTAACCCTGCTGGACAAGTCCCTGCTGATCAA
GTGCCGGCGTTGCGAGGACCGTTTCTGCGGGAAGGAGTGCGTGATAGCGG
CGGCCGGGGAAGGCACGCACGAGGTGACCTGCGGGCTGGTCGAGGGGCTA
GGGGAGGAGCAGCTCTCGGAACTGGGGCGGGGAGACAACGCCGCGGCGAC
GGAGACGGACATCCTTCGGCTGACGGTAGAGTGCATGTCCCGGAGAGGGG
CCGGGCTTAGCGACGAGGAGGAGTGGATTGAGATCGATGATTTGGTTCTT
CCGGAAGACGAGGGTGAAGGAGAGGGCAGCGGCGGCGGTACGTTGGAGCC
CGACGTGATCCGAGAAGCACAGGCCAGGCTGAACGACGGGGGGCTGGAGG
TGTCCGCGGAGGAGATTCAGACAGTGCATCGCAGGCAAGAGCTCCGCCGC
AATTTCCACACCGTGCAGCCGGAACCGCTGGGCAGGCTCCTTCCGCCCAC
CGTGGTCGGTGTCTTCCCCGCGGCATCTCTAGTGAATCACTCTTGCGAGC
CGAACGCTTGCTTCCACTCGCGCCGCGCGGGCCCCGAGGGGCCGCCGCTG
GAGCTGGCCCTAAGGTGCACGACAGACGTCTCCGCGGGGGAGGAGGTCTG
CGTGTCTTATTTGGCCCACTGTGCGGATGCGGCGACGAAGGAGGGTCGCC
GAGAGCTGCTGCAAAACGTGTGGGGCTTCTCGTGCGACTGCCCGCGGTGC
GAGGACGACACCAAGCCGGGGGCTTCCTCGGGAGACTGGCGAGTGACGAA
GATGCTACATAATATTGAGGCCTTGTTGGAGAACGCGCAAAACAGAAGCG
TACGAGAGATCCAGGCCGGTTTGCGGGCACAGCTAGAGCAGGGTCTGCAG
ATGCTCCTAGCAGGGCCCGACCTGTCCTCCCGCTTACAGCTGCAGCTGGC
GATGCGCATCGACGAGGTGGCCACCCGCCGGAGGATGCACGGCTCTCTCC
GGTTCCGATCGGCGCAGGAGCTGGCGGATAGGCTGGTGAGCCAAGGCCTC
GATACCGGCTACACCGCAGACCTCCGCTTCACAATGCACCGGGAGGCCTT
ACGGTGGGCGGCGGACGCGAGGGTCGAGGGGAGCTATCGCCGGGCGGAGC
AGCTGACGCGGGCGTCGCGCGACAGCCTCGAGGAGGCGATCAAGGTCGCC
GCCGTTTGTCTCGGGGAGGGCCACCCCAAGACGAGGGCCCTCGTGGAGTG
CTTGAGACGCTTCTCTCCTTTCGCGTAG
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