mRNA_Ecto-sp13_S_contig844.19822.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig844.19822.1
Unique NamemRNA_Ecto-sp13_S_contig844.19822.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig844.19822.1 vs. uniprot
Match: D7FZR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR7_ECTSI)

HSP 1 Score: 640 bits (1651), Expect = 8.510e-226
Identity = 372/379 (98.15%), Postives = 376/379 (99.21%), Query Frame = 3 
Query:  414 MDFTFARFALNMAMASSRTEPEVMLKAGAPAFLVGMLTNPNELVTGPAVLALSQMAHHEACQRALGLAGGIPPLVLLCFTSQSPAVLLQVCISIAQLSRYPPNRAIIAAKGGVAAMVRLLEGFRREDRVTEQVIGQALTALVNVTYRSDANRGLVEECGATLPTITIMDALDNEVVLVQACLALANMAYVNQFAALRLLEAGADKAACDLIRDSDKTRHSNVIEAAFICLANLANNPLNQAHVGAGDSVELALSVCKQCQSARVVRSAARALCSLTLKNQANKTRCASLDAVSILLELAAAWGVAEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGQAASCVAILMQHPTNALAMKRAGGLKELAELIFDSEHSE 1550
            MDFTFARFALNMA+ASSRTEPEVMLKAGAPAFLVGMLTNPNELVTGPAVLALSQMAHHEACQRALGLAGGIPPLVLLCFTSQSPAVL+Q CISIAQLSRYPPNRAIIAAKGGVAAMVRLLEGFRRED VTEQVIGQALTALVNVTYRSDANRGLVEECGATLPTITIMDALDNEVVLVQACLALANMAY+NQFAALRLLEAGADKAACDLIRDSDKTRHS+VIEAAFICLANLANNPLNQAHVGAGDSVELALSVCK CQSARVVRSAARALCSLTLKNQANKTRCASLDAVSILLELAAAWGVAEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGQAASCVAILMQHPTNALAMKRAGGLKELAELIFDSEHSE
Sbjct:    1 MDFTFARFALNMAIASSRTEPEVMLKAGAPAFLVGMLTNPNELVTGPAVLALSQMAHHEACQRALGLAGGIPPLVLLCFTSQSPAVLVQACISIAQLSRYPPNRAIIAAKGGVAAMVRLLEGFRREDHVTEQVIGQALTALVNVTYRSDANRGLVEECGATLPTITIMDALDNEVVLVQACLALANMAYLNQFAALRLLEAGADKAACDLIRDSDKTRHSDVIEAAFICLANLANNPLNQAHVGAGDSVELALSVCKHCQSARVVRSAARALCSLTLKNQANKTRCASLDAVSILLELAAAWGVAEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGQAASCVAILMQHPTNALAMKRAGGLKELAELIFDSEHSE 379
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig844.19822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZR7_ECTSI8.510e-22698.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig844contigEcto-sp13_S_contig844:16350..21181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score643.7
Seed ortholog evalue5.6e-182
Seed eggNOG ortholog2880.D7FZR7
Model size1554
Hectar predicted targeting categoryother localisation
Exons8
EggNOG OGs28NP6@1,2QV8V@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-21_004090.2
Cds size1140
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig844.19822.1prot_Ecto-sp13_S_contig844.19822.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig844 16350..20768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.820962-CDS-Ecto-sp13_S_contig844:16349..165641681464113.820962-CDS-Ecto-sp13_S_contig844:16349..16564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 16350..16564 -
1681464113.8322282-CDS-Ecto-sp13_S_contig844:17299..174361681464113.8322282-CDS-Ecto-sp13_S_contig844:17299..17436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 17300..17436 -
1681464113.8425715-CDS-Ecto-sp13_S_contig844:17660..177731681464113.8425715-CDS-Ecto-sp13_S_contig844:17660..17773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 17661..17773 -
1681464113.8617969-CDS-Ecto-sp13_S_contig844:18297..184351681464113.8617969-CDS-Ecto-sp13_S_contig844:18297..18435Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 18298..18435 -
1681464113.8776064-CDS-Ecto-sp13_S_contig844:18849..189901681464113.8776064-CDS-Ecto-sp13_S_contig844:18849..18990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 18850..18990 -
1681464113.8929124-CDS-Ecto-sp13_S_contig844:19277..194061681464113.8929124-CDS-Ecto-sp13_S_contig844:19277..19406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 19278..19406 -
1681464113.903994-CDS-Ecto-sp13_S_contig844:20057..201951681464113.903994-CDS-Ecto-sp13_S_contig844:20057..20195Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 20058..20195 -
1681464113.9143279-CDS-Ecto-sp13_S_contig844:20639..207681681464113.9143279-CDS-Ecto-sp13_S_contig844:20639..20768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 20640..20768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.925747-UTR-Ecto-sp13_S_contig844:20768..211811681464113.925747-UTR-Ecto-sp13_S_contig844:20768..21181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig844 20769..21181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig844.19822.1

>prot_Ecto-sp13_S_contig844.19822.1 ID=prot_Ecto-sp13_S_contig844.19822.1|Name=mRNA_Ecto-sp13_S_contig844.19822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=380bp
MDFTFARFALNMAMASSRTEPEVMLKAGAPAFLVGMLTNPNELVTGPAVL
ALSQMAHHEACQRALGLAGGIPPLVLLCFTSQSPAVLLQVCISIAQLSRY
PPNRAIIAAKGGVAAMVRLLEGFRREDRVTEQVIGQALTALVNVTYRSDA
NRGLVEECGATLPTITIMDALDNEVVLVQACLALANMAYVNQFAALRLLE
AGADKAACDLIRDSDKTRHSNVIEAAFICLANLANNPLNQAHVGAGDSVE
LALSVCKQCQSARVVRSAARALCSLTLKNQANKTRCASLDAVSILLELAA
AWGVAEDDAGGSSEQTSTMSSSRSAAATAAAAEEEGTAAGQAASCVAILM
QHPTNALAMKRAGGLKELAELIFDSEHSEA
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mRNA from alignment at Ecto-sp13_S_contig844:16350..21181-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig844.19822.1 ID=mRNA_Ecto-sp13_S_contig844.19822.1|Name=mRNA_Ecto-sp13_S_contig844.19822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4832bp|location=Sequence derived from alignment at Ecto-sp13_S_contig844:16350..21181- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAAGAAGGGCAGTCGCATGATGCGCGAAGCAAAGCGGACGGCGGACTC
GGAGAGAGAGGAGAAGGCCATCCTGTGCCAGTGGCTGAACGGGCAAGTTA
TTCATTGCCGGGCACATCGGCATAACATTATGGCATGTGTGACGGGGGTA
CAGCGTTGACTTGATTCGGTGATGAGAAGGTAGTACTTCACATACACCGT
AAGCCCGCTTTTTATGAATTCTGATTGTCGTCTGCTCTTCATGCACCTTC
ATTCCCTGAAGAACATCCCACGCTCACCCCCCCCAGGCATTCGCTTCTCC
TGTGTTGTGATTACGTATGTGGGAAACAAACGGGTGCGGTGTGTGAAATC
GTGAAAATAATACAATCTTTCAGGTTTCTGGTAGGCGCGTCCAGTGAGCC
TCGGTTATCATCGATGGACTTTACGTTCGCGAGGTTTGCCTTGAACATGG
CCATGGCCTCGAGCAGAACGGAGCCGGAAGTGATGCTGAAGGCAGGAGCC
CCGGCGTTTTTGGTGGGGATGCTAACCAATCCGAACGAACTTGTGAGTTT
TCGTACTAGTCGAAGGCGGCCCCCCGGGCAATGCGCCATAGCCGTGGTAC
CAAACGCGTAAACAAAGCTCAAGTGGTAAGGGACGGAGAAGCCTGGGTAC
ATTTCATCTTTGCTTCGTTAAGCTGGGAGGCGTTTCTTCCATGTGTAACA
CGAAGAATGTCACCCTCTCGAAAGGTCGAGTGCGACCACGCGGGAAACGT
CGGTGGGGTGGTGGTTTTGGCTCTTTCGTCGATAGCGCACGAGGAGAAGA
GACCCGCCAGAGCACGACCATCAACGACAACAACAATACCGGCAGCAACA
GCAACAGCAACAGCAACAGCAGCAACCAGCAGCAGCACCACCACCACCAT
CATCATCATCAAAGTTATCATCTCGTTGCAAACTCGAATCATCCTGTACC
CTGTTGCTCGTCCGAAACGCGAAAAAAAAACACAAGGTGACGGGACCGGC
GGTCCTGGCCCTGTCACAAATGGCGCACCACGAGGCGTGCCAGCGCGCTC
TGGGGCTGGCAGGGGGTATACCCCCCTTGGTGCTCTTGTGCTTCACCAGC
CAGTCGCCGGCGGTTCTCTTGCAGGTTAGTCGGAAATAGCCTAGAGTCCT
CCCCCCCCTCTTCCCCTCGAAGTTTTTTGTTGATAGGAAACTGACTTGCT
AGCAGCTCTTGAGCAGGAGTTTTTCAGGTGATTATTCGACTGTTTTGGTG
GTTTTCAGTATGCGTCAGTTGGTACGTATCGTTGTCTTCGTGAAGCAGCT
AGGTCTGCTCCAGCGTGTCTCTCATGAAATCCACACGTAGTTCGGAAACC
TGTTCCAAATACCCAGGCGTGGGTGACATCTCTCTGCTGTTCAGGGCGTT
GCAAGGACGTACGGACTGGCTGGAGTAACTTAGAGAGCTTCGTAAAAAGT
GGAAGCTCCGGTGGTTTCGAGGGCAGAACGTGCAGCGTGTTGTGTGGCAT
TGCGACGCATGCACACTACTAGTTGTGTAGGGCACAGCACGTGGCGCAGA
GTTTGCGAACCACGAACATCTCCCAGGTAGACGCATCCTAAACGCTGCTA
AGAAGAGCACACTGCTGCTTGTGTGCTGGTATTATTTCGCTGGCACCGTT
ACCCAGCCACCCGCTCAACATCCGCCTCCCCCCCGTCCGCCCCTTCAGTT
GTCAGCGCAACACATGGCTCACTCCACCACTCACCACGTTTTGCTTCGTC
CTGGTTGCTCGCCTCGATTTGTCAGGTGTGCATTTCAATTGCTCAGTTGA
GTCGATACCCGCCAAACAGAGCAATTATTGCGGCCAAGGGCGGCGTCGCG
GCCATGGTGCGCCTACTCGAGGGGTTCAGAAGAGAGGACCGCGTCACCGA
ACAGGTTCTGATCTGCGCTTTCCATTGTTATGGTGTTCGTGTTGATCGGT
GGTGGTGGTTGTGGTTGTTTTGATCGTCGTTGATGTCGTTGTCTGGGGTG
TTGCGGTAGTGGCGACGGTGTTGGTGCTGGTGGTTTTTGTTGATGATGTT
GATGCTTGCCTGCATGAATCATCCTCCGAAGCTTGAAAGACACTTAAATC
CTACCCCCAGAAGATCACGGACAAGAACGTCCACCACAGCACTAGTATCA
AGCCACAGCATGCGACGCCCACAACATCGCCAACTCTCCAGGTGATCGGA
CAAGCCCTTACCGCGCTCGTGAACGTGACCTACCGAAGCGACGCCAATCG
AGGCCTGGTGGAGGAGTGCGGCGCAACTCTCCCAACCATCACAATAATGG
ACGCTTTAGACAACGAAGTGGTGCTGGTTCAGGTGAAGGGAAACAATTTA
GTCCCATCCGCGGGCAGTGATGTGTATGTGTATGTATGTGTGTGTTTCTT
CCAATAGAATCGTTAGCGCCAACCGGCTCACCAAAGAAAATACGTCAGTA
ACAGCGGGAAAAGAACGAGGTCCCCGGAACGTGGCCATGCTTTAAGGTAG
CCGGTATCATTGCAGTGGAATGACAGACGGGCGATACGACTCGTGTCTTT
CTTTTTCAGCCCCTAGAGAAAAAGCTCCGACGGTCTTCTTCCGACACGCT
CGTCCTTCTATTTTCCTTCGCATCTCCCGCTCACCTTTGAATCGATACCC
TATGCCACCGCTTTTGCCGCCGGAAACCTCCCGTGGGGTATGCCGCCGCC
CAAAACCGGCTCACCGTACACGCTGCTCGATCGGGGGAATGGATAGGCCT
GCCTGGCCCTGGCTAACATGGCCTACGTTAACCAGTTTGCGGCCCTGCGT
TTGTTAGAGGCAGGGGCGGACAAGGCAGCCTGTGACCTGATCAGGGACTC
TGACAAGACGAGGCATAGCAACGTCATAGAGGCGGTGAGCTGGATACACA
TCAGTGCCGCTACTTAGTGGTAGGGGGATCGGCGTGGGTGTTGGGGCACC
GTTTTTGGAGGCGATGGCGGCGGCGATGGCTGCTGCTGTTCTTGATAAGC
AGCTCGGGTCTAACTGCTAGCCGGGGGTCATGGCCAAGGCACAAAGACGC
GCTACACCTGAACCGCGTACTGCGGAAGAACAAAAAACGAAAAGAAACAA
CGAAACATTATCGATCTTGCGCCGGAATTGACGTTTAAACGGCATTTTGT
TCTAGTACAGCAATATTACAGTATTCGACGGTGTATTCGAACCGTCTCCC
GAGCTCTTCACGAAGAGCCGAAAAAAAGCTTTTTCTCACTACACCTCTTT
ACTGCATGACTAAAGAGTGCAGGTCTTGCTATTCCTCCATCCGGAAGAAG
CGTGCGTGACCAACAGTAGATATCAAAGACAACAAACACGCCGGTACATC
GCCTACCCGCCCCGCCACCTTCCTTCTCCCTTTCTCCCACTCCAACTCTT
CTTTGTAGGCATTCATCTGCCTCGCCAACCTGGCCAACAACCCCCTCAAC
CAGGCCCATGTCGGCGCGGGGGACAGCGTGGAGCTCGCACTGTCAGTGTG
CAAGCAGTGCCAGAGCGCCAGGTGAAAGATATTATCCTTGCCGGAAAACC
ACAGCTGCAGTACGTACGTCGTTGGCGTGTGTCAACCCGCTCCCCTGTCG
CATCCCCCAAGTTATCTCGACAGATGATGGAAGGTTGCACTTCGAAGGTA
AACAATATGTCATAATTGGCTGTATCCAAAACACTACGTCTCCGGTAGAG
ATACATATATATACATACCCCTGCTCCTTGTGTGCACGATCCCAGGGTGG
TACGATCCGCCGCACGGGCCCTCTGTTCGCTGACGCTCAAGAACCAGGCC
AACAAAACGCGGTGCGCGAGCTTGGACGCGGTGTCGATACTGCTCGAGCT
CGCCGCGGCGTGGGGCGTCGCAGAAGACGACGGTGAGTACCACCCCACCC
ACACGACGCGCGAAAAAAGGATACACATCTTCTTTCCGGCGGCATCTTTC
CGGTGCTCGTGTTGTCTGGAGAGGATCACGCGCCTTTTTCGAGAAGCTGT
GAAGGTGCCAGCCTAAACCGTTCTGTTTTTAGTTTGACGCACCAGCGGGG
GTCACACAGGAGAAAGGCAACATTGGGACCTTCTGTATTGTCCCACCTGC
TCCCCTCGATGTTTGCCTTGGATTCTGTCATACGGAACAGCACTGGCTTC
AGTGTATCGAGCTGAAGCACACTGCTTGAAGCCCAGCAACCTCTTGACCA
ACACTGCCCTGTAGCATTTTGTAGAATCGTCCAAGGCGGAACACGTGGCC
TCGAACTCTGACCGCCTCGGTAAGGGTGTCTTCACGGCATACGAACGAAG
CCAAAGAGATATGATGAAGTGAGTGCAGGTTTCGATGACTGATTTGATGC
ATGCAGGTGGGCAGCAACAAGCTGGATCTTTTGTTTACCCTGTATACGAC
AGAGTGGGCTCCGTCTCATGGGCTTGACGACAAGGCGCGGCCACGAGAGC
AAGCCATATGCAGCACCCACACAGTAATGCAACACCCACAGAGGCTGAAA
GAAGAAATCTACATTAAGAAATTCACGATTCCCATAACCTCCGTCCTCCC
TGGGTTTCCATGGTGACGAAACGACGCCACATACCAACGAGCGCACCCGG
TCGTCCGCACCCATTAGCAGGAGGATCGAGCGAGCAGACAAGTACCATGT
CATCTTCCCGCTCGGCAGCGGCGACAGCGGCGGCCGCTGAGGAGGAAGGG
ACCGCGGCAGGGCAAGCGGCCAGCTGTGTGGCGATCCTGATGCAGCACCC
GACCAACGCTCTCGCCATGAAGAGGGCGGGGGGGCTCAAGGAGCTGGCGG
AGCTCATCTTCGACTCGGAGCACAGCGAGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig844:16350..21181-

>mRNA_Ecto-sp13_S_contig844.19822.1 ID=mRNA_Ecto-sp13_S_contig844.19822.1|Name=mRNA_Ecto-sp13_S_contig844.19822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig844:16350..21181- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTTTACGTTCGCGAGGTTTGCCTTGAACATGGCCATGGCCTCGAG
CAGAACGGAGCCGGAAGTGATGCTGAAGGCAGGAGCCCCGGCGTTTTTGG
TGGGGATGCTAACCAATCCGAACGAACTTGTGACGGGACCGGCGGTCCTG
GCCCTGTCACAAATGGCGCACCACGAGGCGTGCCAGCGCGCTCTGGGGCT
GGCAGGGGGTATACCCCCCTTGGTGCTCTTGTGCTTCACCAGCCAGTCGC
CGGCGGTTCTCTTGCAGGTGTGCATTTCAATTGCTCAGTTGAGTCGATAC
CCGCCAAACAGAGCAATTATTGCGGCCAAGGGCGGCGTCGCGGCCATGGT
GCGCCTACTCGAGGGGTTCAGAAGAGAGGACCGCGTCACCGAACAGGTGA
TCGGACAAGCCCTTACCGCGCTCGTGAACGTGACCTACCGAAGCGACGCC
AATCGAGGCCTGGTGGAGGAGTGCGGCGCAACTCTCCCAACCATCACAAT
AATGGACGCTTTAGACAACGAAGTGGTGCTGGTTCAGGCCTGCCTGGCCC
TGGCTAACATGGCCTACGTTAACCAGTTTGCGGCCCTGCGTTTGTTAGAG
GCAGGGGCGGACAAGGCAGCCTGTGACCTGATCAGGGACTCTGACAAGAC
GAGGCATAGCAACGTCATAGAGGCGGCATTCATCTGCCTCGCCAACCTGG
CCAACAACCCCCTCAACCAGGCCCATGTCGGCGCGGGGGACAGCGTGGAG
CTCGCACTGTCAGTGTGCAAGCAGTGCCAGAGCGCCAGGGTGGTACGATC
CGCCGCACGGGCCCTCTGTTCGCTGACGCTCAAGAACCAGGCCAACAAAA
CGCGGTGCGCGAGCTTGGACGCGGTGTCGATACTGCTCGAGCTCGCCGCG
GCGTGGGGCGTCGCAGAAGACGACGCAGGAGGATCGAGCGAGCAGACAAG
TACCATGTCATCTTCCCGCTCGGCAGCGGCGACAGCGGCGGCCGCTGAGG
AGGAAGGGACCGCGGCAGGGCAAGCGGCCAGCTGTGTGGCGATCCTGATG
CAGCACCCGACCAACGCTCTCGCCATGAAGAGGGCGGGGGGGCTCAAGGA
GCTGGCGGAGCTCATCTTCGACTCGGAGCACAGCGAGGCA
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