mRNA_Ecto-sp13_S_contig12396.1981.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: D7FVV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV7_ECTSI) HSP 1 Score: 241 bits (615), Expect = 5.430e-70 Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 1
Query: 106 ALERSMPEYVLPYAIHLLAYHPDFPVHKDDKQRIKNMEKYLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLFQR 474
ALERSMPEYVLPYAIHLLAYHPDFP HKDDKQRIKN+EKYLNFLIEPLI GRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLFQR
Sbjct: 1184 ALERSMPEYVLPYAIHLLAYHPDFPAHKDDKQRIKNLEKYLNFLIEPLIGAGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLFQR 1306
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: A0A6H5KWB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWB1_9PHAE) HSP 1 Score: 238 bits (606), Expect = 8.780e-69 Identity = 121/128 (94.53%), Postives = 121/128 (94.53%), Query Frame = 1
Query: 106 ALERSMPEYVLPYAIHLLAYHPDFPVHK-----DDKQRIKNMEKYLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLFQR 474
ALERSMPEYVLPYAIHLLAYHPDFPVHK DDKQRIKNMEKYLNFLIEPLI GRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLFQR
Sbjct: 1048 ALERSMPEYVLPYAIHLLAYHPDFPVHKARGNFDDKQRIKNMEKYLNFLIEPLIGAGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLFQR 1175
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: W7TFJ9_9STRA (Sister chromatid cohesion protein pds5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFJ9_9STRA) HSP 1 Score: 108 bits (271), Expect = 7.680e-24 Identity = 59/133 (44.36%), Postives = 78/133 (58.65%), Query Frame = 1
Query: 121 MPEYVLPYAIHLLAYHPDFPVHKDDKQRIKNMEKYLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDAL-----------------DPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLF 468
MPEY+LPY +HLLA+ PDFP D R + +++ L F++EPL+ EADN+S LL M DTI T Y+DA D + R+H R+ R+ L SKIKTQ +LQ YPG I+LP PL+
Sbjct: 1126 MPEYLLPYLLHLLAHFPDFPTSPHDSVRWRPIQRCLAFVLEPLM--ATLGTEADNLSFLLLMTDTILTRYKDASAAIKRQEKEKNSLINEDDVATERLHQVTRVCREFLRSKIKTQENLQAYPGKIYLPLPLY 1256
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: A0A7S3XUA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUA2_HETAK) HSP 1 Score: 104 bits (259), Expect = 1.140e-22 Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 109 LERSMPEYVLPYAIHLLAYHPDFP--VHKDDKQRIKNMEKYLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLF 468
L SMPEY++PY IHLLA+ PD D K +E+ L +EPL+ +ADN++ LLQ++ TI T+Y DA+ P + IH A +A+ +L IKTQ +L+PYPG I++PAPLF
Sbjct: 7 LRSSMPEYMVPYVIHLLAHRPDCSRAAGGGDPAAAKRLERCLASALEPLV--HSLGADADNLAFLLQIVSTIQTNYLDAVQPKSPGIHKIANMAQSILRKLIKTQENLKPYPGTIYIPAPLF 126
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: A0A0P1AVQ9_PLAHL (Sister chromatid cohesion complex Cohesin, subunit PDS5 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVQ9_PLAHL) HSP 1 Score: 87.0 bits (214), Expect = 2.650e-16 Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 121 MPEYVLPYAIHLLAYHPDFPVHKDDKQRIKNMEK---------YLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLFQ 471
+PEY LPY IHLLA+HP FP + +K ++ + YL F ++ L+ ADN++ LLQML T + Y D + P++ ++ + LL +IKTQSDL+P+PG IFLP L+Q
Sbjct: 382 VPEYALPYVIHLLAHHPSFPTNLVEKTSSVSILQSAEWSDQLAYLEFFLDGLV---SPKSAADNIAFLLQML-TKLSQYHDVIAPNDLAMYPLIDMTAMLLKKRIKTQSDLKPFPGKIFLPKHLYQ 503
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: A0A0P1A5B3_PLAHL (Sister chromatid cohesion complex Cohesin, subunit PDS5 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5B3_PLAHL) HSP 1 Score: 87.0 bits (214), Expect = 2.770e-16 Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 121 MPEYVLPYAIHLLAYHPDFPVHKDDKQRIKNMEK---------YLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLFQ 471
+PEY LPY IHLLA+HP FP + +K ++ + YL F ++ L+ ADN++ LLQML T + Y D + P++ ++ + LL +IKTQSDL+P+PG IFLP L+Q
Sbjct: 620 VPEYALPYVIHLLAHHPSFPTNLVEKTSSVSILQSAEWSDQLAYLEFFLDGLV---SPKSAADNIAFLLQML-TKLSQYHDVIAPNDLAMYPLIDMTAMLLKKRIKTQSDLKPFPGKIFLPKHLYQ 741
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: G4YMS1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YMS1_PHYSP) HSP 1 Score: 82.0 bits (201), Expect = 1.600e-14 Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 121 MPEYVLPYAIHLLAYHPDFPVHKDDKQRI---------KNMEKYLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLF 468
+PEY LPY IHLLA+HP+FPV ++ + YL F ++ L+ ADN++ LLQML ++ + DA P + I+ A LL KIK QS+L+P+PG IFLP L+
Sbjct: 1155 VPEYALPYVIHLLAHHPEFPVKLVERTPTVVVLQSALWTDQLAYLGFFLDGLV--STNAAAADNIAFLLQMLTKLSQCH-DATSPDDINIYPLIDSAVALLKKKIKNQSNLKPFPGKIFLPKHLY 1276
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: H3GJE0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJE0_PHYRM) HSP 1 Score: 81.6 bits (200), Expect = 2.180e-14 Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 121 MPEYVLPYAIHLLAYHPDFPVHKDDKQRI---------KNMEKYLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLF 468
+PEY LPY IHLLA+HP FPV +K N YL F ++ L+ ADN++ LLQ+L ++ + D L P + I+ A LL KIK QS+L+P+PG IFLP L+
Sbjct: 1144 VPEYALPYVIHLLAHHPHFPVKLVEKTAHVMILQSPLWTNQLGYLGFFLDGLV--STNGAAADNIAFLLQILTKLSQCH-DVLSPESKHIYPLIDSAVVLLKKKIKKQSNLKPFPGKIFLPKHLY 1265
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: A0A6A3I6F7_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I6F7_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.960e-14 Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 121 MPEYVLPYAIHLLAYHPDFPVHKDDKQRI---------KNMEKYLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLF 468
+PEY LPY IHLLA+HPDFPV ++ + YL F ++ L+ ADN++ LLQML ++ + D P++ I+ A LL KIK QS+L+P+PG IFLP L+
Sbjct: 1150 VPEYALPYVIHLLAHHPDFPVKLVERTPSVVVLQSALWTDQLAYLGFFLDGLV--STNATAADNIAFLLQMLTKLSQCH-DVTSPNDINIYPLIDSAVALLKKKIKNQSNLKPFPGKIFLPKHLY 1271
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Match: D0NH43_PHYIT (Sister chromatid cohesion protein PDS5 n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NH43_PHYIT) HSP 1 Score: 80.9 bits (198), Expect = 3.960e-14 Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 121 MPEYVLPYAIHLLAYHPDFPVHKDDKQRIKNMEK---------YLNFLIEPLIVDGRQTGEADNMSMLLQMLDTITTSYRDALDPSNNRIHLTARIARQLLLSKIKTQSDLQPYPGNIFLPAPLF 468
+PEY LPY IHLLA+HP FPV ++ + YL+F ++ L+ ADN++ LLQML ++ + D PS+ I+ A LL +IK+QS+L+P+PG IFLP L+
Sbjct: 1123 VPEYALPYVIHLLAHHPSFPVKLVERTSTVEVLSSALWADQLAYLSFFLDGLVATN--AAAADNIAFLLQMLTKLSQCH-DVAAPSDINIYPLIDSAAVLLKKRIKSQSNLKPFPGKIFLPKHLY 1244 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12396.1981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12396.1981.1 >prot_Ecto-sp13_S_contig12396.1981.1 ID=prot_Ecto-sp13_S_contig12396.1981.1|Name=mRNA_Ecto-sp13_S_contig12396.1981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp ATAADDDDVDDAGSEGGGGGSPASTKASSAAAAAAALERSMPEYVLPYAIback to top mRNA from alignment at Ecto-sp13_S_contig12396:1563..3353+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12396.1981.1 ID=mRNA_Ecto-sp13_S_contig12396.1981.1|Name=mRNA_Ecto-sp13_S_contig12396.1981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1791bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12396:1563..3353+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12396:1563..3353+ >mRNA_Ecto-sp13_S_contig12396.1981.1 ID=mRNA_Ecto-sp13_S_contig12396.1981.1|Name=mRNA_Ecto-sp13_S_contig12396.1981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12396:1563..3353+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |