prot_Ecto-sp13_S_contig8437.19818.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8437.19818.1
Unique Nameprot_Ecto-sp13_S_contig8437.19818.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length295
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8437.19818.1 vs. uniprot
Match: D7FTH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH6_ECTSI)

HSP 1 Score: 548 bits (1413), Expect = 1.120e-196
Identity = 276/294 (93.88%), Postives = 283/294 (96.26%), Query Frame = 0 
Query:    1 MSCKIFASVGLMALLDTAAGNYVEYTNYENGGCVTALSVSVYTGVPTVNGVQTADMCLEYEGTVESTSVPSSLTDQQGLLSLMHVCNTTDPGQLTSTWYSTDDCDETAVAYEFREDATCGVSCTDVEPDYGSDDFEEATITFYDTSDCSNATDTEVYAMADLYELFEVADGTSCSASGDFDLFTVIQCSDGSPAAVYYEDATCTGDAVGMTYNPGCAAVPSNGTYPGDYFMAECTEETAAVEDDDTEVEDDDVDGATNSAFSRFGTGSMPAFFMSCGVAAASVALTTTVFFARF 294
            MSCK FASVGLMAL+DTAAGNYVEYT YENGGCVTALSVSVYTGVPTVNGVQTADMCLEYEGT ESTSV SSLTDQQGLLSLMHVCNTTDPGQLTSTWYSTDDCDETAVAYEFREDATCGVSCTDVEPDYG+DDFEEATITFYDTSDCSNATDTEVYAMADLYEL+EVADGTSCSASGDFDL+TVIQCSDGSPAAVYYEDATC GDAVGMTYNPGCAAVPSNGTYPGDYFMAECTEETAAVEDDDTEVE+D   GATNSAFSRFG GS PAFF+SCGVAAASVA+TT VFFARF
Sbjct:    1 MSCKFFASVGLMALVDTAAGNYVEYTTYENGGCVTALSVSVYTGVPTVNGVQTADMCLEYEGTAESTSVASSLTDQQGLLSLMHVCNTTDPGQLTSTWYSTDDCDETAVAYEFREDATCGVSCTDVEPDYGTDDFEEATITFYDTSDCSNATDTEVYAMADLYELYEVADGTSCSASGDFDLYTVIQCSDGSPAAVYYEDATCAGDAVGMTYNPGCAAVPSNGTYPGDYFMAECTEETAAVEDDDTEVEED---GATNSAFSRFGLGSTPAFFVSCGVAAASVAITTNVFFARF 291
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8437.19818.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTH6_ECTSI1.120e-19693.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 293..294
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 271..292
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..270
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.695
NoneNo IPR availableTMHMMTMhelixcoord: 270..292

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8437contigEcto-sp13_S_contig8437:2448..6082 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8437.19818.1mRNA_Ecto-sp13_S_contig8437.19818.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8437 1300..6082 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8437.19818.1 ID=prot_Ecto-sp13_S_contig8437.19818.1|Name=mRNA_Ecto-sp13_S_contig8437.19818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MSCKIFASVGLMALLDTAAGNYVEYTNYENGGCVTALSVSVYTGVPTVNG
VQTADMCLEYEGTVESTSVPSSLTDQQGLLSLMHVCNTTDPGQLTSTWYS
TDDCDETAVAYEFREDATCGVSCTDVEPDYGSDDFEEATITFYDTSDCSN
ATDTEVYAMADLYELFEVADGTSCSASGDFDLFTVIQCSDGSPAAVYYED
ATCTGDAVGMTYNPGCAAVPSNGTYPGDYFMAECTEETAAVEDDDTEVED
DDVDGATNSAFSRFGTGSMPAFFMSCGVAAASVALTTTVFFARF*
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