mRNA_Ecto-sp13_S_contig8437.19818.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8437.19818.1
Unique NamemRNA_Ecto-sp13_S_contig8437.19818.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8437.19818.1 vs. uniprot
Match: D7FTH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH6_ECTSI)

HSP 1 Score: 550 bits (1416), Expect = 5.580e-191
Identity = 276/294 (93.88%), Postives = 283/294 (96.26%), Query Frame = 1 
Query:    1 MSCKIFASVGLMALLDTAAGNYVEYTNYENGGCVTALSVSVYTGVPTVNGVQTADMCLEYEGTVESTSVPSSLTDQQGLLSLMHVCNTTDPGQLTSTWYSTDDCDETAVAYEFREDATCGVSCTDVEPDYGSDDFEEATITFYDTSDCSNATDTEVYAMADLYELFEVADGTSCSASGDFDLFTVIQCSDGSPAAVYYEDATCTGDAVGMTYNPGCAAVPSNGTYPGDYFMAECTEETAAVEDDDTEVEDDDVDGATNSAFSRFGTGSMPAFFMSCGVAAASVALTTTVFFARF 882
            MSCK FASVGLMAL+DTAAGNYVEYT YENGGCVTALSVSVYTGVPTVNGVQTADMCLEYEGT ESTSV SSLTDQQGLLSLMHVCNTTDPGQLTSTWYSTDDCDETAVAYEFREDATCGVSCTDVEPDYG+DDFEEATITFYDTSDCSNATDTEVYAMADLYEL+EVADGTSCSASGDFDL+TVIQCSDGSPAAVYYEDATC GDAVGMTYNPGCAAVPSNGTYPGDYFMAECTEETAAVEDDDTEVE+D   GATNSAFSRFG GS PAFF+SCGVAAASVA+TT VFFARF
Sbjct:    1 MSCKFFASVGLMALVDTAAGNYVEYTTYENGGCVTALSVSVYTGVPTVNGVQTADMCLEYEGTAESTSVASSLTDQQGLLSLMHVCNTTDPGQLTSTWYSTDDCDETAVAYEFREDATCGVSCTDVEPDYGTDDFEEATITFYDTSDCSNATDTEVYAMADLYELYEVADGTSCSASGDFDLYTVIQCSDGSPAAVYYEDATCAGDAVGMTYNPGCAAVPSNGTYPGDYFMAECTEETAAVEDDDTEVEED---GATNSAFSRFGLGSTPAFFVSCGVAAASVAITTNVFFARF 291
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8437.19818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTH6_ECTSI5.580e-19193.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8437contigEcto-sp13_S_contig8437:1300..6082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2033
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001410.1
Cds size885
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.528085-UTR-Ecto-sp13_S_contig8437:1299..24471681464113.528085-UTR-Ecto-sp13_S_contig8437:1299..2447Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8437 1300..2447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.5387332-CDS-Ecto-sp13_S_contig8437:2447..27351681464113.5387332-CDS-Ecto-sp13_S_contig8437:2447..2735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8437 2448..2735 -
1681464113.548582-CDS-Ecto-sp13_S_contig8437:3215..34331681464113.548582-CDS-Ecto-sp13_S_contig8437:3215..3433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8437 3216..3433 -
1681464113.5595677-CDS-Ecto-sp13_S_contig8437:3993..42331681464113.5595677-CDS-Ecto-sp13_S_contig8437:3993..4233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8437 3994..4233 -
1681464113.5705135-CDS-Ecto-sp13_S_contig8437:5943..60821681464113.5705135-CDS-Ecto-sp13_S_contig8437:5943..6082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8437 5944..6082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8437.19818.1prot_Ecto-sp13_S_contig8437.19818.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8437 2448..6082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8437.19818.1

>prot_Ecto-sp13_S_contig8437.19818.1 ID=prot_Ecto-sp13_S_contig8437.19818.1|Name=mRNA_Ecto-sp13_S_contig8437.19818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MSCKIFASVGLMALLDTAAGNYVEYTNYENGGCVTALSVSVYTGVPTVNG
VQTADMCLEYEGTVESTSVPSSLTDQQGLLSLMHVCNTTDPGQLTSTWYS
TDDCDETAVAYEFREDATCGVSCTDVEPDYGSDDFEEATITFYDTSDCSN
ATDTEVYAMADLYELFEVADGTSCSASGDFDLFTVIQCSDGSPAAVYYED
ATCTGDAVGMTYNPGCAAVPSNGTYPGDYFMAECTEETAAVEDDDTEVED
DDVDGATNSAFSRFGTGSMPAFFMSCGVAAASVALTTTVFFARF*
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mRNA from alignment at Ecto-sp13_S_contig8437:1300..6082-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8437.19818.1 ID=mRNA_Ecto-sp13_S_contig8437.19818.1|Name=mRNA_Ecto-sp13_S_contig8437.19818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8437:1300..6082- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTGCAAAATTTTCGCTTCGGTCGGCCTGATGGCTCTTCTCGACAC
GGCGGCCGGCAACTACGTGGAGTACACGAACTATGAGAACGGCGGCTGCG
TAACTGCTCTCTCCGTCAGCGTCTACACCGGAGTGCCAAGTGAGCCTACC
GTAAAACTCTTGTCTAGTCTCTTTCGACGAATGCGCTGCTTTCGTGTGAG
CAAACCGTAAAAATCTCCAGTTCAAGTCAATGTACAGACAGCACCGAGGT
TTGGTTTGGTATCTGGCGCGTTCACTCGGCATTTTTGTTTGATTCACACC
TCACATGCGCGCGCCTCATCCTCCCGGCCGAACCTCAGCACTCCCTATCG
CCGCTCGTCCAGGCAGCAACAGCGACAGCCTTGCAGGATGTGGTGTAGCG
CATCTACACGTAGATCACGATGTTGAGCCTAGATTCCGTGGGATGTTTGC
ATTCGATCATTTTCCATGAGCTTTACACATACGGTCTATCAAGGATTGAT
CACAACAAAGCCCTTTTCGAGTTTCGTAGGTCCCTCCCAAGCGAGACGCG
CTTTGAGCTTGGCCTTGTTGTCACAACGGTGGTTGGGGTGGGACTTGTAG
TTCCCCATTTGCTGCTGTGTTTGCAGAAAAACACAAGTTGAAACTTTCAT
GAAAAACAATCGTGGCTTGTACTTTCCGGGCTTCCGGACGGAGGCATAAA
TTTATCTGCTGCGGCGAACCCCGCGCATGCAACCGCTGCGAAAGAGTCTG
TCAAGGCACAGCTACATGGTTGTAAAGGCTGCAGAACATGACCATCACTA
AGGTGTGCATGTATCTTCGACACCCGAACTCTTTCAGCGGGGCTGCACCG
AAGCACATGGTTGAGTATCTTTCGTGCAGTTTTTTTTCAACCATTTTTCG
TTGGTTCGTCGCATCGAAAGAACCCGACAACAAACACCGATGGGGTGAAA
CCCCGACAGCGTGCGGTGCGGGGAATCATACCGCTGTATGTAGGCTCACA
ACGTCGATCGGGCGGGGTTAGTAAGCCTCGGGTACACCTCGGTACCTTAC
AAGTAGTCTATCTGTAATGCTGTGCTAGGTGCACGAGGCACCCACAGGCG
TGTCCCCGATGGGCTCGACGAGGGGGTTTGTTTCCTTCGATGTCGCTAGA
CACTCTTTGTCGCTAACACTCTTGCGACACGTAAGATCCAACTTGAAGTA
TTTCCGCGCCGTGGGAAAAAATAGAACAAAAACACATGATTCCGGGAAGA
GGCATGGGATGCTGCATGTCACAACGCCGCAGAGAACCAGCAGCAGCTTA
GACATAGCATCTTGGCGGATAGATGCGGCAGGCTCACCACTTACCCGCCA
CACTTGATCGTTCCCAAACCTGCCTATTTCCCACAGAGTTGTAGCAAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATTCAGTCTAGAACATGTGTACTCTT
TTTTGTGATGTTGAAGCTTTCCCGACACCCGTCCTTTTCAATAACGTCGC
TCCTTCTCTTCGTACTTTTACCTGCATGTCCTCTCTTCGCCAAACACAGC
GGTCAACGGTGTGCAAACCGCAGACATGTGCCTCGAGTACGAGGGGACGG
TAGAAAGCACCAGCGTGCCTTCCAGCCTGACGGACCAACAGGGTCTCCTC
TCGCTCATGCACGTGTGCAACACGACCGACCCGGGACAGCTGACGAGCAC
CTGGTACTCCACGGATGACTGCGACGAGACGGCCGTGGCCTACGAGTTCA
GAGAGGATGCGACCTGCGGCGTTTCCTGCACGGATGTTGGTGAGAGCTTC
ATACATACGATTTATGTTTTTTATGTTGCCGTGCCAAGTCTGTGCCGGAA
AAGAAAGGGGGGCGAGTGCAACAGGTGTTTTTGTGCCATAGATACTTTGA
AGGCTCGATCGCTCTACCAAAACAAGAGACATTCAACGCCGATCGACAAC
GTGCAAGGACAGCTCTGGATGAGATAGGTCATCCCGAAACCACCCTTTGT
CGGCATTTGGCAGCGTCGGGCTGTGAAGCAGTCGAGATTTGAAAAGCGAT
GGTACACGTGAGCGTCGCTTGCACTGAGTGAACGGCATTCTTTCGAGTCT
AGTCCATGCCTTGCACAATACGTTTCGTTGGGAGTACCGATTCTCTTTGG
GTACCCCGTCCGTTGTTTCTTCGTGCTACTGCCGATTTTGAGCAACTAGT
TATTATGTCCTTCTACTGGTCGGCATCGGCATTTCCTCGCTCTCGTACAG
CCGCACTGGTCGCCTGTATGATGTCAGAATCAATAGAAAGAACCGACCGG
AAAACCACCACCTCCTCACCAAGTCCCGCCCCACCGAAATCAACACCAGA
GCCTGACTATGGGTCAGACGACTTCGAGGAGGCCACGATAACTTTCTACG
ACACTTCCGACTGCAGCAATGCCACGGACACCGAGGTCTACGCCATGGCC
GATCTGTACGAGCTCTTTGAAGTGGCGGACGGGACGTCTTGCAGCGCGTC
AGGGGACTTCGACCTATTCACGGTCATCCAGTGCAGTGACGGCTCCCCTG
CCGCGGTGTACTACGAGGTACGCATACCTTGCCGTAGGTCCCCCGTTTTT
CTCTTAAAGATCAGAGGTCTTGCATGCATGTTATGTAATTCTAGCAGTAA
CTTAGGTGCGAATGAATGGATGAGACAGACGTTCATATTCCAAACAGGGG
ACGAATAAGTGAAAAGCAGCTGAAATAGTTGGATGGCGCTTTGGAATTAT
TTGTCTTATCCTGGTTGGAGATACGCTCCCGCGCTTGATTTTTCTGCATC
GGCAGACAGCAAGGCGGTTCACTCGTGTTCGAGCACATTACATGCTTGGG
TCACCGTGCTCGCTTCCTGTAGGAATATGGAAAGACGACGTCTCAACCTG
CGCCCTTTTGGAGCAGTAGGTTGTGCGTACCAACCCCCCGTAGTCACGTT
CATGAGCCGTCCCGTGAAACCACCGTTACACGTTTCTGTTGTGTCAAACC
CCCGGAACTCACGTACGGTAATATCGTTCCTCCGTGAACCGCTTTAGGAC
GCCACCTGTACCGGGGACGCCGTGGGCATGACCTACAACCCCGGGTGCGC
TGCCGTCCCCAGCAACGGGACGTACCCGGGAGACTACTTCATGGCGGAGT
GTACGGAGGAGACCGCCGCGGTTGAGGACGACGATACGGAGGTTGAAGAC
GACGACGTCGACGGGGCCACCAACTCTGCGTTTTCTCGCTTCGGAACCGG
GTCCATGCCCGCATTCTTTATGTCGTGTGGTGTTGCGGCTGCCAGCGTTG
CTCTAACAACTACCGTCTTCTTTGCCCGTTTTTAATCGTGGTGTGACCCT
GGGTCCGTAATTAGCGCGAGCATGTTTTTTGCTTGCCGGCTATTGAAGGC
AATTTTACTCTGTTTGTGGTGGTGTGATGGTTGTTGTCGAGCTTTGATGT
GAAGCCATACGGGTGACAAGCAGGTTTGGTTGGTTTCGCGAACAAAGTTG
CTGGCAGTTTTCGTGAAAACGAGTGAGTGTGAAGATTGTTAGGGCGACCC
TCGCGGTCCGGTTCTGGCGCAACAGCTGAGCCCCAGCGTATAGAGTTTGT
TGTGGGGTCGACCTTGCTGCCGTGCACACATAACATATCACAAGAAGGCT
TGTTGGTGGCCAGGAGTGGCCTGACAACCCACTGTTACTTTAGTTGCCGT
ATGTTGAAGTAGTGTTTGTTTTGGTGATTGTGAGTATGTTCAGATCCCGT
GTGCCTTGTGCCGAGCGGCTCCAGCGAGCTGTTGCGATATGTAGGTAATA
AATGGCCCGACGTGGCTGTCACAATGTAGTGCTGCCGATCGCCCTCTTTT
GACTGAATCGGATGTGGCCTTTGTTTGATCCGAATGGTATATGCGCGGAG
ATTTGTCGTGTTTCGCCCCGTTGATGTTTGGCGGCTAGGCTACACCTTTC
AGCATCGACATGTGTATTGTACTGTAATGTATTGGACGCATTAGCCGCGG
TCGCACAGGAAGTAGTCTCCACCTTTCTGGTGGTGCTTGCTTGTTTGAAT
AGCTGCTCCGTTCTGCGCCGTTTGCCTTGAATATTGTTGGGCGAAATAGA
CAGCAAGATATGAGCTCGAAGTAGCAGCGGATGGTATGAGGTTCAAATTT
TCCGCAGCAGAGAGGGCCTCCCGGGTAGACACCTACGGAGTGGGAGGAAG
CTCAAAGAACTGCGAATGAGTTCGATGGAATTCCGTGGAGAACAATTTCT
GAGAACATCGTGCGTGAGGCCGGCGATGAGCTACTCCGACGAAACTTCTT
TCTAAGAGCATGGGTTCAACAGGTTGTGCTCTTGCTTGCCTGTCTTCTAT
TTGGCACAACCAACGTGGGTGTACCTGAAAACTGCTTCTTCGCTGCATAT
GTGACATCGAAAGGGTTGCTTTTGAGCAGCAGCGTTTTCCTCAATTGCAG
GTCGGGATGCCGACGCTCCCAGAAAGGAAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8437:1300..6082-

>mRNA_Ecto-sp13_S_contig8437.19818.1 ID=mRNA_Ecto-sp13_S_contig8437.19818.1|Name=mRNA_Ecto-sp13_S_contig8437.19818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8437:1300..6082- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTGCAAAATTTTCGCTTCGGTCGGCCTGATGGCTCTTCTCGACAC
GGCGGCCGGCAACTACGTGGAGTACACGAACTATGAGAACGGCGGCTGCG
TAACTGCTCTCTCCGTCAGCGTCTACACCGGAGTGCCAACGGTCAACGGT
GTGCAAACCGCAGACATGTGCCTCGAGTACGAGGGGACGGTAGAAAGCAC
CAGCGTGCCTTCCAGCCTGACGGACCAACAGGGTCTCCTCTCGCTCATGC
ACGTGTGCAACACGACCGACCCGGGACAGCTGACGAGCACCTGGTACTCC
ACGGATGACTGCGACGAGACGGCCGTGGCCTACGAGTTCAGAGAGGATGC
GACCTGCGGCGTTTCCTGCACGGATGTTGAGCCTGACTATGGGTCAGACG
ACTTCGAGGAGGCCACGATAACTTTCTACGACACTTCCGACTGCAGCAAT
GCCACGGACACCGAGGTCTACGCCATGGCCGATCTGTACGAGCTCTTTGA
AGTGGCGGACGGGACGTCTTGCAGCGCGTCAGGGGACTTCGACCTATTCA
CGGTCATCCAGTGCAGTGACGGCTCCCCTGCCGCGGTGTACTACGAGGAC
GCCACCTGTACCGGGGACGCCGTGGGCATGACCTACAACCCCGGGTGCGC
TGCCGTCCCCAGCAACGGGACGTACCCGGGAGACTACTTCATGGCGGAGT
GTACGGAGGAGACCGCCGCGGTTGAGGACGACGATACGGAGGTTGAAGAC
GACGACGTCGACGGGGCCACCAACTCTGCGTTTTCTCGCTTCGGAACCGG
GTCCATGCCCGCATTCTTTATGTCGTGTGGTGTTGCGGCTGCCAGCGTTG
CTCTAACAACTACCGTCTTCTTTGCCCGTTTTTAA
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