mRNA_Ecto-sp13_S_contig84351.19816.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84351.19816.1
Unique NamemRNA_Ecto-sp13_S_contig84351.19816.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig84351.19816.1 vs. uniprot
Match: A0A5A8DUJ1_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUJ1_CAFRO)

HSP 1 Score: 50.1 bits (118), Expect = 3.080e-5
Identity = 35/73 (47.95%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:   10 LPPSLLA-AFGRRNSLDVVMALLREGRARRDVNKVTRWLHHTPLYCAALHGHADIALALLRAGADVDLPDTHG 225
            L PSLLA A     S + V AL ++ R   DVN V   L  TPL  A ++G AD+AL LLRAGA+   P  HG
Sbjct:  979 LEPSLLARAVSLGGSSEAVAALAQDERV--DVNAVCPALKRTPLELACMNGAADLALLLLRAGAEPACPTLHG 1049
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84351.19816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8DUJ1_CAFRO3.080e-547.95Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84351contigEcto-sp13_S_contig84351:139..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.4625144-CDS-Ecto-sp13_S_contig84351:138..3661681464113.4625144-CDS-Ecto-sp13_S_contig84351:138..366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84351 139..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84351.19816.1prot_Ecto-sp13_S_contig84351.19816.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84351 139..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84351.19816.1

>prot_Ecto-sp13_S_contig84351.19816.1 ID=prot_Ecto-sp13_S_contig84351.19816.1|Name=mRNA_Ecto-sp13_S_contig84351.19816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
TVLLPPSLLAAFGRRNSLDVVMALLREGRARRDVNKVTRWLHHTPLYCAA
LHGHADIALALLRAGADVDLPDTHGK
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mRNA from alignment at Ecto-sp13_S_contig84351:139..366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84351.19816.1 ID=mRNA_Ecto-sp13_S_contig84351.19816.1|Name=mRNA_Ecto-sp13_S_contig84351.19816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84351:139..366+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGTTTTGTTGCCCCCGTCTCTTTTGGCCGCATTTGGCCGACGCAACAG
CCTGGACGTCGTCATGGCGTTGCTCAGGGAAGGCCGAGCGAGACGGGACG
TGAACAAGGTCACGCGCTGGCTTCACCATACGCCGCTGTACTGCGCCGCG
TTGCATGGGCACGCAGATATTGCCCTGGCGCTGTTGAGGGCGGGGGCAGA
TGTTGACCTTCCGGACACCCACGGTAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84351:139..366+

>mRNA_Ecto-sp13_S_contig84351.19816.1 ID=mRNA_Ecto-sp13_S_contig84351.19816.1|Name=mRNA_Ecto-sp13_S_contig84351.19816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84351:139..366+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGTTTTGTTGCCCCCGTCTCTTTTGGCCGCATTTGGCCGACGCAACAG
CCTGGACGTCGTCATGGCGTTGCTCAGGGAAGGCCGAGCGAGACGGGACG
TGAACAAGGTCACGCGCTGGCTTCACCATACGCCGCTGTACTGCGCCGCG
TTGCATGGGCACGCAGATATTGCCCTGGCGCTGTTGAGGGCGGGGGCAGA
TGTTGACCTTCCGGACACCCACGGTAAG
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