prot_Ecto-sp13_S_contig12396.1982.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12396.1982.1
Unique Nameprot_Ecto-sp13_S_contig12396.1982.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length181
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12396.1982.1 vs. uniprot
Match: A0A6H5KWB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWB1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.790e-21
Identity = 126/181 (69.61%), Postives = 128/181 (70.72%), Query Frame = 0 
Query:    4 TGRGAKGRGAVAAGTAEKGGEAEAGSGDDADEEKGDKPSPAKKQKRGASRAAAAPSTPPSRRSPRVPTSATPDHVGDNEVKSKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSARTATAGAGAST----GRVGGRRPPRVRGAVPAAAEASASGRGNTRGKGRRDDSEN 180
            TGRG KGRGAVAA TAEK GEA                        GAS AAAA STPPSRRSPRV TSATPD V D EVKSKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P + TATAG         G  GGRRPP VRGAVPAAA    SGRGN RGKGR+DDSEN
Sbjct: 1470 TGRGPKGRGAVAAETAEKSGEAGXXXXXXXXXXXXXXXXXXXXXXXGASGAAAAGSTPPSRRSPRVSTSATPDRVRDTEVKSKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSLTATAGXXXXXXXXXGCAGGRRPPMVRGAVPAAAAXXXSGRGNARGKGRKDDSEN 1650
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BLAST of mRNA_Ecto-sp13_S_contig12396.1982.1 vs. uniprot
Match: D7FVV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-8
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 
Query:   46 KQKRGASRAAAAPSTPPSRRSPRVPTSATPDHVGDNEVKSK 86
            KQKRGASR AAAPSTPPSRRSPRV TSATPDHVGDNE  S+
Sbjct: 1641 KQKRGASRTAAAPSTPPSRRSPRVATSATPDHVGDNEETSQ 1681
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12396.1982.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWB1_9PHAE3.790e-2169.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVV7_ECTSI1.330e-887.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12396contigEcto-sp13_S_contig12396:4008..4550 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12396.1982.1mRNA_Ecto-sp13_S_contig12396.1982.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12396 4008..4551 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12396.1982.1 ID=prot_Ecto-sp13_S_contig12396.1982.1|Name=mRNA_Ecto-sp13_S_contig12396.1982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
SSSTGRGAKGRGAVAAGTAEKGGEAEAGSGDDADEEKGDKPSPAKKQKRG
ASRAAAAPSTPPSRRSPRVPTSATPDHVGDNEVKSKTAAGGGGGGGRKKA
APLPARKPLQQQQEQQQAKPVAAKKKPSARTATAGAGASTGRVGGRRPPR
VRGAVPAAAEASASGRGNTRGKGRRDDSENE
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