mRNA_Ecto-sp13_S_contig8434.19815.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A6H5KGH2_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH2_9PHAE) HSP 1 Score: 297 bits (760), Expect = 3.410e-92 Identity = 161/178 (90.45%), Postives = 164/178 (92.13%), Query Frame = 1
Query: 1 KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRAMAPMRGLXXXXXXXXXXVYTLHYEVSPYRTRFLLQPALVIGKTLVTVILAAHLLSCFWFWV 534
KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRY+TSWFFLDLVTCLPYTTLLRSVIPASLRAMAP+RGL XXXXXXXVY LHYEVSP A+ IGKTLVTVILAAHLLSCFWFWV
Sbjct: 73 KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRYITSWFFLDLVTCLPYTTLLRSVIPASLRAMAPVRGLRLLXXXXXXXVYALHYEVSPV--------AMSIGKTLVTVILAAHLLSCFWFWV 242
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: D7FJ53_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ53_ECTSI) HSP 1 Score: 295 bits (755), Expect = 2.040e-90 Identity = 160/178 (89.89%), Postives = 165/178 (92.70%), Query Frame = 1
Query: 1 KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRAMAPMRGLXXXXXXXXXXVYTLHYEVSPYRTRFLLQPALVIGKTLVTVILAAHLLSCFWFWV 534
KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPA+AFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTER+EIARRY+TSWFFLDLVTCLPYTTLLRSV+PASLR MAPMRGL XXXXXXXXVYTLHYEVSP A+ IGKTLVTVILAAHLLSCFWFWV
Sbjct: 20 KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPAHAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERKEIARRYITSWFFLDLVTCLPYTTLLRSVVPASLRVMAPMRGLRLXXXXXXXXVYTLHYEVSPV--------AMSIGKTLVTVILAAHLLSCFWFWV 189
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: D8LJT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT9_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 6.530e-11 Identity = 60/175 (34.29%), Postives = 98/175 (56.00%), Query Frame = 1
Query: 19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPA--SLRAMAPMRGLXXXXXXXXXXVYTLHYEVSPYRTRFLLQPALV-IGKTLVTVILAAHLLSCFWFWV 534
+IV P R W ++ I+++++V PWRISF+ A+ L + + F +D +L F +A E L+ +R IAR+YV++WF D++ +P+ +L+ I SL+++ +R XXXXXXXXXX +++ L P++V + K L ++ A HLL C WF V
Sbjct: 109 FIVHPNDPRKLYWDLFVGAMILYSIVVIPWRISFKQDASGAMLIFDYLVDAIFGIDIILCFNSAYFEEDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMV 283
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A6A2ZG68_HIBSY (Potassium channel n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZG68_HIBSY) HSP 1 Score: 70.1 bits (170), Expect = 8.850e-11 Identity = 38/113 (33.63%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 13 SKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLA-AIANISFIVDTVLHFFTAVV--TESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPAS 342
S++I+ P SR + W+ +M + + V P+ I+F P L +A +AN F VD VL F A + T L+ +R++IA+RY+++WF +DL + +P+ L+R + S
Sbjct: 440 SRWIISPMDSRYRCWETFMVMLVYHLAFVYPFEIAFLTPVPPVALYVADTVANSFFAVDIVLTFLVAYIDSTTQLLVLDREKIAKRYLSTWFIMDLASTIPFEALIRLLFTKS 552
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A4D8YKX5_SALSN (Potassium channel n=4 Tax=Salvia TaxID=21880 RepID=A0A4D8YKX5_SALSN) HSP 1 Score: 68.2 bits (165), Expect = 3.960e-10 Identity = 40/113 (35.40%), Postives = 68/113 (60.18%), Query Frame = 1
Query: 19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRC-PANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLR 348
+IV P R ++W+N++ V +++T V+P+ F PA +T I N F +D VL FF A + S L+ +R+ IA++Y+ SWFFLD+++ +P + L R ++P L+
Sbjct: 60 FIVSPYDRRYRAWQNFLIVLVVYTAWVSPFEFGFLDKPARPLSIT-DNIVNGFFFIDIVLTFFVAYLDRSTYLLVDDRKRIAKKYLLSWFFLDVISTIP-SELARKIMPEPLQ 170
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A8J5FS19_ZINOF (Potassium channel n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FS19_ZINOF) HSP 1 Score: 67.0 bits (162), Expect = 9.900e-10 Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 10 MSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIP 336
+ K+IV P + ++W++ +F+ +++T V+P+ F N I N F +D VL FF A + E+ L+ + + IA+RY+TSWF LD+V+ +P +L+ + P
Sbjct: 53 LHKFIVSPYDKKYRTWESILFMLVLYTAWVSPFEFGFLQENNGPFRLADNIVNAFFFIDIVLTFFVAYLDEATYLLVDDPKPIAKRYLTSWFILDIVSTIPSEFMLKLLPP 163
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A444DET6_ENSVE (KHA domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444DET6_ENSVE) HSP 1 Score: 66.6 bits (161), Expect = 1.260e-9 Identity = 34/113 (30.09%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRA 351
+IV P R +SW+ ++ + +++T V+P+ F + + I N F +D VL FF A + + L+ R++IA RY+++WF LD+ + +P + + R ++P +LR+
Sbjct: 117 FIVSPYDRRYRSWETFLVILVVYTAWVSPFEFGFLAKSRGVLALIDNIVNAFFAIDIVLTFFVAYLDRTSYLLIDNRKQIAWRYLSTWFILDVASTIP-SEIARKILPKNLRS 228
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: UPI00098E213F (potassium channel AKT1-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E213F) HSP 1 Score: 66.2 bits (160), Expect = 1.820e-9 Identity = 51/173 (29.48%), Postives = 83/173 (47.98%), Query Frame = 1
Query: 19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISF-RCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRAMAPMRGLXXXXXXXXXXVYTLHYEVSPYRTRFLLQPALVIGKTLVTVILAAHLLSCFWF 528
+IV P R ++W+ ++ + +++T V+P+ F P A +T I N F VD +L FF A + L+ E + IAR+YV SWF LDL++ +P L R ++P ++R L ++ E FL++ A +I TL A H CF++
Sbjct: 18 FIVSPYDKRYRAWQTFLILLVVYTAWVSPFEFGFVNRPRGALAVT-DNIVNAFFFVDIILTFFVAYLDRVTYLLIDEHKRIARKYVFSWFILDLISTIP-NELARKILPENVRDFGFFNMLRLWRLRRVSSLFA-RLEKDRNFNYFLIRCAKLICVTL----FAVHCAGCFYY 183
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A078ATT9_STYLE (Cation channel family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078ATT9_STYLE) HSP 1 Score: 66.2 bits (160), Expect = 1.940e-9 Identity = 34/103 (33.01%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 16 KYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVV-TESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLL 321
K+I+ P + W+ + + ++FT +VTP+RI+F +A + + + +F VD++L FFTA ++ L+ +R+ IAR+Y+ SWF +DL++ +P +L
Sbjct: 504 KFIILPDDVFKERWEITIMLLLLFTAIVTPYRIAFTDTDDAVWSVIDNLTDGTFFVDSILQFFTAYQNSDEELIHDRRLIARKYIKSWFLIDLLSVMPINYML 606
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A6I9RF69_ELAGV (Potassium channel n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RF69_ELAGV) HSP 1 Score: 65.1 bits (157), Expect = 4.590e-9 Identity = 37/113 (32.74%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRA 351
+IV P R +SW+ ++ V + +T V+P+ F A+ T + N F +D VL FF A + + L+ ++IA RY+TSWF LD+++ +P + L+ ++P+SL +
Sbjct: 59 FIVSPYDRRYRSWEVFLVVLVAYTAWVSPFEFGFLDKASGALATADNVVNGFFAIDIVLTFFVAFLDRASYLLIDNPKQIAWRYITSWFILDVISTIP-SELVWKILPSSLHS 170 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8434.19815.1 >prot_Ecto-sp13_S_contig8434.19815.1 ID=prot_Ecto-sp13_S_contig8434.19815.1|Name=mRNA_Ecto-sp13_S_contig8434.19815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp MSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAback to top mRNA from alignment at Ecto-sp13_S_contig8434:5862..6830+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8434.19815.1 ID=mRNA_Ecto-sp13_S_contig8434.19815.1|Name=mRNA_Ecto-sp13_S_contig8434.19815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8434:5862..6830+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8434:5862..6830+ >mRNA_Ecto-sp13_S_contig8434.19815.1 ID=mRNA_Ecto-sp13_S_contig8434.19815.1|Name=mRNA_Ecto-sp13_S_contig8434.19815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8434:5862..6830+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |