mRNA_Ecto-sp13_S_contig8434.19815.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8434.19815.1
Unique NamemRNA_Ecto-sp13_S_contig8434.19815.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A6H5KGH2_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH2_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 3.410e-92
Identity = 161/178 (90.45%), Postives = 164/178 (92.13%), Query Frame = 1
Query:    1 KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRAMAPMRGLXXXXXXXXXXVYTLHYEVSPYRTRFLLQPALVIGKTLVTVILAAHLLSCFWFWV 534
            KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRY+TSWFFLDLVTCLPYTTLLRSVIPASLRAMAP+RGL   XXXXXXXVY LHYEVSP         A+ IGKTLVTVILAAHLLSCFWFWV
Sbjct:   73 KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRYITSWFFLDLVTCLPYTTLLRSVIPASLRAMAPVRGLRLLXXXXXXXVYALHYEVSPV--------AMSIGKTLVTVILAAHLLSCFWFWV 242          
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: D7FJ53_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ53_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 2.040e-90
Identity = 160/178 (89.89%), Postives = 165/178 (92.70%), Query Frame = 1
Query:    1 KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRAMAPMRGLXXXXXXXXXXVYTLHYEVSPYRTRFLLQPALVIGKTLVTVILAAHLLSCFWFWV 534
            KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPA+AFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTER+EIARRY+TSWFFLDLVTCLPYTTLLRSV+PASLR MAPMRGL  XXXXXXXXVYTLHYEVSP         A+ IGKTLVTVILAAHLLSCFWFWV
Sbjct:   20 KSVMSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPAHAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERKEIARRYITSWFFLDLVTCLPYTTLLRSVVPASLRVMAPMRGLRLXXXXXXXXVYTLHYEVSPV--------AMSIGKTLVTVILAAHLLSCFWFWV 189          
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: D8LJT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT9_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.530e-11
Identity = 60/175 (34.29%), Postives = 98/175 (56.00%), Query Frame = 1
Query:   19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPA--SLRAMAPMRGLXXXXXXXXXXVYTLHYEVSPYRTRFLLQPALV-IGKTLVTVILAAHLLSCFWFWV 534
            +IV P   R   W  ++   I+++++V PWRISF+  A+   L    + +  F +D +L F +A   E  L+ +R  IAR+YV++WF  D++  +P+ +L+   I    SL+++  +R  XXXXXXXXXX      +++       L P++V + K L  ++ A HLL C WF V
Sbjct:  109 FIVHPNDPRKLYWDLFVGAMILYSIVVIPWRISFKQDASGAMLIFDYLVDAIFGIDIILCFNSAYFEEDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMV 283          
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A6A2ZG68_HIBSY (Potassium channel n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZG68_HIBSY)

HSP 1 Score: 70.1 bits (170), Expect = 8.850e-11
Identity = 38/113 (33.63%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   13 SKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLA-AIANISFIVDTVLHFFTAVV--TESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPAS 342
            S++I+ P  SR + W+ +M + +     V P+ I+F  P     L +A  +AN  F VD VL F  A +  T   L+ +R++IA+RY+++WF +DL + +P+  L+R +   S
Sbjct:  440 SRWIISPMDSRYRCWETFMVMLVYHLAFVYPFEIAFLTPVPPVALYVADTVANSFFAVDIVLTFLVAYIDSTTQLLVLDREKIAKRYLSTWFIMDLASTIPFEALIRLLFTKS 552          
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A4D8YKX5_SALSN (Potassium channel n=4 Tax=Salvia TaxID=21880 RepID=A0A4D8YKX5_SALSN)

HSP 1 Score: 68.2 bits (165), Expect = 3.960e-10
Identity = 40/113 (35.40%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRC-PANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLR 348
            +IV P   R ++W+N++ V +++T  V+P+   F   PA    +T   I N  F +D VL FF A +  S   L+ +R+ IA++Y+ SWFFLD+++ +P + L R ++P  L+
Sbjct:   60 FIVSPYDRRYRAWQNFLIVLVVYTAWVSPFEFGFLDKPARPLSIT-DNIVNGFFFIDIVLTFFVAYLDRSTYLLVDDRKRIAKKYLLSWFFLDVISTIP-SELARKIMPEPLQ 170          
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A8J5FS19_ZINOF (Potassium channel n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FS19_ZINOF)

HSP 1 Score: 67.0 bits (162), Expect = 9.900e-10
Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   10 MSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIP 336
            + K+IV P   + ++W++ +F+ +++T  V+P+   F    N        I N  F +D VL FF A + E+   L+ + + IA+RY+TSWF LD+V+ +P   +L+ + P
Sbjct:   53 LHKFIVSPYDKKYRTWESILFMLVLYTAWVSPFEFGFLQENNGPFRLADNIVNAFFFIDIVLTFFVAYLDEATYLLVDDPKPIAKRYLTSWFILDIVSTIPSEFMLKLLPP 163          
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A444DET6_ENSVE (KHA domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444DET6_ENSVE)

HSP 1 Score: 66.6 bits (161), Expect = 1.260e-9
Identity = 34/113 (30.09%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRA 351
            +IV P   R +SW+ ++ + +++T  V+P+   F   +      +  I N  F +D VL FF A +  +   L+  R++IA RY+++WF LD+ + +P + + R ++P +LR+
Sbjct:  117 FIVSPYDRRYRSWETFLVILVVYTAWVSPFEFGFLAKSRGVLALIDNIVNAFFAIDIVLTFFVAYLDRTSYLLIDNRKQIAWRYLSTWFILDVASTIP-SEIARKILPKNLRS 228          
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: UPI00098E213F (potassium channel AKT1-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E213F)

HSP 1 Score: 66.2 bits (160), Expect = 1.820e-9
Identity = 51/173 (29.48%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISF-RCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRAMAPMRGLXXXXXXXXXXVYTLHYEVSPYRTRFLLQPALVIGKTLVTVILAAHLLSCFWF 528
            +IV P   R ++W+ ++ + +++T  V+P+   F   P  A  +T   I N  F VD +L FF A +      L+ E + IAR+YV SWF LDL++ +P   L R ++P ++R       L          ++    E       FL++ A +I  TL     A H   CF++
Sbjct:   18 FIVSPYDKRYRAWQTFLILLVVYTAWVSPFEFGFVNRPRGALAVT-DNIVNAFFFVDIILTFFVAYLDRVTYLLIDEHKRIARKYVFSWFILDLISTIP-NELARKILPENVRDFGFFNMLRLWRLRRVSSLFA-RLEKDRNFNYFLIRCAKLICVTL----FAVHCAGCFYY 183          
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A078ATT9_STYLE (Cation channel family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078ATT9_STYLE)

HSP 1 Score: 66.2 bits (160), Expect = 1.940e-9
Identity = 34/103 (33.01%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   16 KYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVV-TESGLLTERQEIARRYVTSWFFLDLVTCLPYTTLL 321
            K+I+ P     + W+  + + ++FT +VTP+RI+F    +A    +  + + +F VD++L FFTA   ++  L+ +R+ IAR+Y+ SWF +DL++ +P   +L
Sbjct:  504 KFIILPDDVFKERWEITIMLLLLFTAIVTPYRIAFTDTDDAVWSVIDNLTDGTFFVDSILQFFTAYQNSDEELIHDRRLIARKYIKSWFLIDLLSVMPINYML 606          
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Match: A0A6I9RF69_ELAGV (Potassium channel n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RF69_ELAGV)

HSP 1 Score: 65.1 bits (157), Expect = 4.590e-9
Identity = 37/113 (32.74%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   19 YIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAAIANISFIVDTVLHFFTAVVTESG--LLTERQEIARRYVTSWFFLDLVTCLPYTTLLRSVIPASLRA 351
            +IV P   R +SW+ ++ V + +T  V+P+   F   A+    T   + N  F +D VL FF A +  +   L+   ++IA RY+TSWF LD+++ +P + L+  ++P+SL +
Sbjct:   59 FIVSPYDRRYRSWEVFLVVLVAYTAWVSPFEFGFLDKASGALATADNVVNGFFAIDIVLTFFVAFLDRASYLLIDNPKQIAWRYITSWFILDVISTIP-SELVWKILPSSLHS 170          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8434.19815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGH2_9PHAE3.410e-9290.45Cyclic nucleotide-binding domain-containing protei... [more]
D7FJ53_ECTSI2.040e-9089.89Cyclic nucleotide-binding domain-containing protei... [more]
D8LJT9_ECTSI6.530e-1134.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A2ZG68_HIBSY8.850e-1133.63Potassium channel n=1 Tax=Hibiscus syriacus TaxID=... [more]
A0A4D8YKX5_SALSN3.960e-1035.40Potassium channel n=4 Tax=Salvia TaxID=21880 RepID... [more]
A0A8J5FS19_ZINOF9.900e-1032.43Potassium channel n=4 Tax=Zingiber officinale TaxI... [more]
A0A444DET6_ENSVE1.260e-930.09KHA domain-containing protein n=2 Tax=Ensete ventr... [more]
UPI00098E213F1.820e-929.48potassium channel AKT1-like n=1 Tax=Asparagus offi... [more]
A0A078ATT9_STYLE1.940e-933.01Cation channel family protein n=1 Tax=Stylonychia ... [more]
A0A6I9RF69_ELAGV4.590e-932.74Potassium channel n=4 Tax=Arecaceae TaxID=4710 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8434contigEcto-sp13_S_contig8434:5862..6830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score290.4
Seed ortholog evalue5.5e-76
Seed eggNOG ortholog2880.D7FJ53
Model size534
KEGG koko:K04908,ko:K21867
KEGG TC1.A.1.20.6,1.A.1.4
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phosphorelay sensor kinase activity
EggNOG OGsCOG2202@1,KOG0498@1,KOG0498@2759,KOG0501@2759
Cds size525
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04040
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.4099674-UTR-Ecto-sp13_S_contig8434:5861..58701681464113.4099674-UTR-Ecto-sp13_S_contig8434:5861..5870Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8434 5862..5870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.4215643-CDS-Ecto-sp13_S_contig8434:5870..63281681464113.4215643-CDS-Ecto-sp13_S_contig8434:5870..6328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8434 5871..6328 +
1681464113.4344225-CDS-Ecto-sp13_S_contig8434:6763..68301681464113.4344225-CDS-Ecto-sp13_S_contig8434:6763..6830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8434 6764..6830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8434.19815.1prot_Ecto-sp13_S_contig8434.19815.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8434 5871..6830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8434.19815.1

>prot_Ecto-sp13_S_contig8434.19815.1 ID=prot_Ecto-sp13_S_contig8434.19815.1|Name=mRNA_Ecto-sp13_S_contig8434.19815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
MSKYIVDPRTSRMQSWKNWMFVNIMFTVLVTPWRISFRCPANAFGLTLAA
IANISFIVDTVLHFFTAVVTESGLLTERQEIARRYVTSWFFLDLVTCLPY
TTLLRSVIPASLRAMAPMRGLRLLKLLKVVKVYTLHYEVSPYRTRFLLQP
ALVIGKTLVTVILAAHLLSCFWFWV
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mRNA from alignment at Ecto-sp13_S_contig8434:5862..6830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8434.19815.1 ID=mRNA_Ecto-sp13_S_contig8434.19815.1|Name=mRNA_Ecto-sp13_S_contig8434.19815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8434:5862..6830+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGTCTGTCATGTCCAAGTACATCGTGGACCCGCGGACCTCGCGCATGCA GTCCTGGAAGAACTGGATGTTCGTGAACATTATGTTCACTGTGCTGGTGA CCCCGTGGCGAATAAGCTTTCGGTGCCCGGCGAACGCCTTCGGGTTGACG CTGGCCGCGATCGCCAACATTTCTTTCATCGTGGACACGGTGCTGCACTT TTTTACGGCGGTGGTGACGGAATCAGGCCTGCTCACCGAGCGCCAGGAGA TCGCACGGCGGTATGTCACGTCGTGGTTTTTTCTCGACCTCGTGACCTGT TTGCCGTACACAACGCTGCTCCGGAGCGTGATCCCTGCCAGCTTGAGGGC GATGGCGCCGATGCGAGGGTTACGCTTGTTGAAACTGTTAAAGGTGGTGA AGGTCTACACGTTGCACTACGAGGTCAGTCCTTACCGTACCCGTTTTCTC CTGCAGCCGGCTCTTGTGTCTAGACTGTCTCTTAGGTCACGAAAGTCCGC TCTCGCTGCTATATTCCTGTAGATAGAGCGGTTTCGCAGCAGCCACACCT AGAGTCTAACGGCCCCCTTTAGACTAGTTAAGATGAAGCTTGAGGTATTG GTGGTGTTGGTGCGGTTAGCGTATGAGGGCGGCAACCTCGTTTGTCTTAA GCACAAAGGCACTACTTATTTCTTTCATTCAAGCCATCAACGCATGGCAG GTTTCCATCCACGTACTATCGGCCGACACAGGCAATCCCGGACGTTTTTG TTGGCGAGTCGTATTCTGGAACACCACTATCAGCCCGCAAGAGGAGTGTG GTTACAGTAGATGAGAAGAAATATGTTGTGTCTATCTTGACAAGATGAAG AAAAATTGAACGATGTTTTTGTGTTTCGACAGGTGAGCCCCGTGGCCATG AGCATCGGGAAGACCCTAGTCACAGTTATTTTGGCGGCCCATCTTCTGAG CTGCTTCTGGTTCTGGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8434:5862..6830+

>mRNA_Ecto-sp13_S_contig8434.19815.1 ID=mRNA_Ecto-sp13_S_contig8434.19815.1|Name=mRNA_Ecto-sp13_S_contig8434.19815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8434:5862..6830+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAAGTACATCGTGGACCCGCGGACCTCGCGCATGCAGTCCTGGAA
GAACTGGATGTTCGTGAACATTATGTTCACTGTGCTGGTGACCCCGTGGC
GAATAAGCTTTCGGTGCCCGGCGAACGCCTTCGGGTTGACGCTGGCCGCG
ATCGCCAACATTTCTTTCATCGTGGACACGGTGCTGCACTTTTTTACGGC
GGTGGTGACGGAATCAGGCCTGCTCACCGAGCGCCAGGAGATCGCACGGC
GGTATGTCACGTCGTGGTTTTTTCTCGACCTCGTGACCTGTTTGCCGTAC
ACAACGCTGCTCCGGAGCGTGATCCCTGCCAGCTTGAGGGCGATGGCGCC
GATGCGAGGGTTACGCTTGTTGAAACTGTTAAAGGTGGTGAAGGTCTACA
CGTTGCACTACGAGGTCAGTCCTTACCGTACCCGTTTTCTCCTGCAGCCG
GCTCTTGTCATCGGGAAGACCCTAGTCACAGTTATTTTGGCGGCCCATCT
TCTGAGCTGCTTCTGGTTCTGGGTC
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