mRNA_Ecto-sp13_S_contig8434.19814.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8434.19814.1
Unique NamemRNA_Ecto-sp13_S_contig8434.19814.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8434.19814.1 vs. uniprot
Match: A0A6H5K572_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K572_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 5.220e-54
Identity = 108/121 (89.26%), Postives = 112/121 (92.56%), Query Frame = 1 
Query:   94 MAGSEAPAAATAGAAASQRPQRQQPPALGKIGDASQLVEAALQARVAASQDQRFATTKTLFFALSSLCGVLRLELRMKHLGQ--------GKSDSELRADCEACNTTLQGVLSNKKLEVTA 432
            MAGS+AP AATAGAAASQRPQ+QQPPALGKIGDASQLVEAALQARVAASQDQRFATTKTLFFALSSLCGVLRLELRMKHLGQ        G+SDSELRADCEACNTTLQGVLSNKKLE+TA
Sbjct:    1 MAGSKAPEAATAGAAASQRPQQQQPPALGKIGDASQLVEAALQARVAASQDQRFATTKTLFFALSSLCGVLRLELRMKHLGQVWMGVHCSGQSDSELRADCEACNTTLQGVLSNKKLEITA 121
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8434.19814.1 vs. uniprot
Match: D7FJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ52_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 5.610e-50
Identity = 101/113 (89.38%), Postives = 102/113 (90.27%), Query Frame = 1 
Query:   94 MAGSEAPAAATAGAAASQRPQRQQPPALGKIGDASQLVEAALQARVAASQDQRFATTKTLFFALSSLCGVLRLELRMKHLGQGKSDSELRADCEACNTTLQGVLSNKKLEVTA 432
            MAGSEAPAAATAG           PPALG+IGDASQLVEAALQARVAASQDQRFATTKTLFFALSSLCGVLRLELRMKHLGQGKSDSELRADCEACNTTLQGVLSNKKLEVTA
Sbjct:    1 MAGSEAPAAATAGXXXXXXXXXXXPPALGRIGDASQLVEAALQARVAASQDQRFATTKTLFFALSSLCGVLRLELRMKHLGQGKSDSELRADCEACNTTLQGVLSNKKLEVTA 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8434.19814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K572_9PHAE5.220e-5489.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ52_ECTSI5.610e-5089.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8434contigEcto-sp13_S_contig8434:1939..4347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score183.3
Seed ortholog evalue7.8e-44
Seed eggNOG ortholog2880.D7FJ52
Model size434
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005982,GO:0005984,GO:0005991,GO:0006073,GO:0006521,GO:0008150,GO:0008152,GO:0009311,GO:0009889,GO:0009987,GO:0010364,GO:0010565,GO:0010817,GO:0019222,GO:0031323,GO:0031326,GO:0031335,GO:0032350,GO:0033238,GO:0042762,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046885,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051239,GO:0062012,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:1900055,GO:1900908,GO:1900911,GO:2000024,GO:2000026
Exons3
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsKOG1822@1,KOG1822@2759
Cds size432
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.355124-CDS-Ecto-sp13_S_contig8434:1940..20331681464113.355124-CDS-Ecto-sp13_S_contig8434:1940..2033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8434 1941..2033 -
1681464113.3698406-CDS-Ecto-sp13_S_contig8434:2783..30521681464113.3698406-CDS-Ecto-sp13_S_contig8434:2783..3052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8434 2784..3052 -
1681464113.3801115-CDS-Ecto-sp13_S_contig8434:4277..43471681464113.3801115-CDS-Ecto-sp13_S_contig8434:4277..4347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8434 4278..4347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8434.19814.1prot_Ecto-sp13_S_contig8434.19814.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8434 1941..4347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8434.19814.1

>prot_Ecto-sp13_S_contig8434.19814.1 ID=prot_Ecto-sp13_S_contig8434.19814.1|Name=mRNA_Ecto-sp13_S_contig8434.19814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
AQKSRWRAPRGAWASQEGGKHQAANSTLTSAMAGSEAPAAATAGAAASQR
PQRQQPPALGKIGDASQLVEAALQARVAASQDQRFATTKTLFFALSSLCG
VLRLELRMKHLGQGKSDSELRADCEACNTTLQGVLSNKKLEVTA
back to top

mRNA from alignment at Ecto-sp13_S_contig8434:1939..4347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8434.19814.1 ID=mRNA_Ecto-sp13_S_contig8434.19814.1|Name=mRNA_Ecto-sp13_S_contig8434.19814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2409bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8434:1939..4347- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCAGAAGAGCCGGTGGAGAGCGCCGCGAGGTGCTTGGGCATCACAGGA
AGGAGGGAAGCACCAAGCAGGTACCGCGATATTGCTTGTCAGTGTCAATC
GGGGAGATCTATGTTGAACAAAGCAGGTGGTGAATACCCACATCGAGCAA
ACGCTGGAGCATGCATAGGTTCTGTTCTTTCGTGCTGCTGCTGCTGCTAC
TGTGCTGCTGCGCGACAGGAGCAGCATTTGCGCCCTAACACGCAGAGCTC
CAGGTGCTCCCTGCCGTATTCTGGTGTATACCAACGGTCACACAAAAGCA
GGTTTCGATAGGTTCATGTACGTAGTAAATTGTAAGGACACGGAGTGTGA
ACAGTCCGCACGACTGCTGTTGGGCGCGGATGAATCAATCCTGCGGAGGC
CGCCCCTGTGTACAGCGAAGCACAGGCCGAGTAGAGCCAACTCTTGTTCA
CTGCTTCGAACAAACCCAACGTGCCGCTGCTGCTGCTGCTGCTGCTGCTG
TTTTGCATGGAAGTCGAGACATTCCAACCGGACTTGACATAATCAACCTG
TGCACCCGTTCTGTCCCCCGACACACGTCAACTTTCCACCGCGACGTTGT
TCGGAAAGCCGCATGTTCCCAGAATATCTATGATTAGGACGTATCATGCA
GACACATAGGTTTGGAAGGAGACCGGCACTTATCCCGCGCGAGTGCGTGA
GTATGCAAGGGTTGTGCACGATATAACCTTCGCATTCATCCTCCTGTGGG
TCGCCTTCCTTCTCCTACAATGCATCTTTGGCAGATCTTTCCCATGTCAT
ATGCAACAGAGTCATTTGCAGCATAGAACGGCCTCTCCGACACAGCAGCA
AGATTCAGCCGCACCAACCAGTGTGTAGCAATACTGGAAAGAGCTGTTAA
TCACGAGCGATTCGATGGCATTGCGAGTGATGCGCTTCTTGACTATGACT
TGTTGCGTGTGACGATGCCGAAGAAAGAATTACAAAGCATCGGCAAGAAA
TGCCGTTTTTGCGGCAGATTTCGTCCCCGAACAGCAACGTTGCACATGAC
CCTCCCAAGGAGTTGTAAGCGCTCGTCGCGCACGTAAAGCAGGAAAAGCC
GGCGGGAGTGCGGCGTTGGTTGTGGCAGGTCATGGCATCTATCCCACCAC
CGTCACCTGAGCTATCTACGCGGCACAGCGATCACGCCCTTTTTTCATGA
AATGCCTCAGCCGACTTTCGTTATTTAACATTGCTGGCTCCGCCGCCCTC
CACCGGCCTTGCACGGTGGTCGCTTGACTCTTTCGCTCCACCTAGCGAAT
TCGACACTTACGTCAGCCATGGCGGGTTCCGAGGCACCAGCAGCAGCAAC
GGCTGGGGCGGCGGCCTCGCAACGGCCCCAGCGGCAGCAGCCGCCGGCGC
TCGGAAAGATAGGCGATGCGTCTCAGCTTGTGGAGGCTGCGCTGCAAGCG
CGCGTGGCGGCGTCGCAGGACCAGCGGTTCGCCACCACCAAGACGCTCTT
CTTCGCGCTGAGCTCGCTGTGCGGGGTGCTGAGGTTGGAGCTGCGCATGA
AACACCTGGGACAGGTGTGCGTGGGTGTGCTTTGCAGCGTATGTGTAGAT
ACACTGCTGCAGAGGGTTTCGCCCGTGTGTGCACCTTGTCGAGCTTCTTG
TGTGTTGTACGACGGTTTCGTGTTTTGCGTCGACCGTATAAGCGCATGCT
CTACTTAGCTACACGAATGGGATCTACGGACGGTGCCTGAGGCAACGACA
TCGCGTCCTTGCGATGGTGGGAAGGGGGGAAGCAACTCGCTACCAACTCT
ACTGAATTTATCAACTCCCACGCTTCACGATCCTGGGAAATAAGTAAGAA
GTTCAGGCTCGAAAGATCAAAACATTCGAACTCGATCATGACAACAGGTA
CACGAGTAAGAATATGCTGATTACTATGCAGTAGCTGTTGAGCTAGTTGC
CCGAGAGAGGAAAAAGTAGGAAAAGAGCCTCGCGGACTATGCAAGAGATT
CTTTACTCAAGTGGTTACGCCTTACGGTGACGGGGAATATTTTAGGTTCT
TGCATGCGTGGTATGATGCCCTTTTGTAACTCGATATTCTTGGAAATTTC
CTAAAAGCAGGCGTTCCGGGTGGCATGCTTCCTTGTTGACCCCAACTTCG
CGATCTTCACCGCGCGTACTCTCTTATTGTACCGGCATCCCCACCACATT
TTCCTAACTAATCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCT
CGCTCTCTCTCTCTCTCGCTCTCTCTCTGTGTCCCCTTGTTCTTTGGCAT
GCCGTCGCCATCAGGGCAAGTCGGACTCGGAGCTGCGAGCGGACTGTGAG
GCGTGCAACACCACCTTGCAAGGAGTGCTGTCCAACAAGAAGCTGGAGGT
CACCGCGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8434:1939..4347-

>mRNA_Ecto-sp13_S_contig8434.19814.1 ID=mRNA_Ecto-sp13_S_contig8434.19814.1|Name=mRNA_Ecto-sp13_S_contig8434.19814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8434:1939..4347- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCAGAAGAGCCGGTGGAGAGCGCCGCGAGGTGCTTGGGCATCACAGGA
AGGAGGGAAGCACCAAGCAGCGAATTCGACACTTACGTCAGCCATGGCGG
GTTCCGAGGCACCAGCAGCAGCAACGGCTGGGGCGGCGGCCTCGCAACGG
CCCCAGCGGCAGCAGCCGCCGGCGCTCGGAAAGATAGGCGATGCGTCTCA
GCTTGTGGAGGCTGCGCTGCAAGCGCGCGTGGCGGCGTCGCAGGACCAGC
GGTTCGCCACCACCAAGACGCTCTTCTTCGCGCTGAGCTCGCTGTGCGGG
GTGCTGAGGTTGGAGCTGCGCATGAAACACCTGGGACAGGGCAAGTCGGA
CTCGGAGCTGCGAGCGGACTGTGAGGCGTGCAACACCACCTTGCAAGGAG
TGCTGTCCAACAAGAAGCTGGAGGTCACCGCG
back to top