mRNA_Ecto-sp13_S_contig8432.19813.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8432.19813.1
Unique NamemRNA_Ecto-sp13_S_contig8432.19813.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8432.19813.1 vs. uniprot
Match: D8LCR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR0_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.850e-27
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 2 
Query:    8 GIWVPWEAEAANASPERLKWTPGCASVTAVVPGLYLLSCGFFSQIPFVATVRRTATP 178
            GIWVPWEAEAANASPERLKWTPGCASVTAVVPGLYLLSCGFFSQIPFVAT R  A P
Sbjct:  752 GIWVPWEAEAANASPERLKWTPGCASVTAVVPGLYLLSCGFFSQIPFVATPRPNAAP 808
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BLAST of mRNA_Ecto-sp13_S_contig8432.19813.1 vs. uniprot
Match: A0A6H5KUP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.840e-26
Identity = 64/113 (56.64%), Postives = 64/113 (56.64%), Query Frame = 2 
Query:    8 GIWVPWEAEAANASPERLK--------------------WTPGCASVTAVVPGLYLLSCGFFSQIPFVATVRRTATPRPLLFSSSWTTTIKILSSIPPPILLHVMPHNTTRTF 286
            GIWVPWEAEAANASPERLK                    WTPGCASVTAVVPGLYLLSCGFFSQIPFVATV                           P LLHV PHNTTRTF
Sbjct:  713 GIWVPWEAEAANASPERLKVGPTHDRFRTCQSKYAEECEWTPGCASVTAVVPGLYLLSCGFFSQIPFVATVFH-------------------------PYLLHVTPHNTTRTF 800
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8432.19813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCR0_ECTSI2.850e-2792.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUP0_9PHAE1.840e-2656.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8432contigEcto-sp13_S_contig8432:4557..5147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size330
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.2300014-CDS-Ecto-sp13_S_contig8432:4556..48221681464113.2300014-CDS-Ecto-sp13_S_contig8432:4556..4822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8432 4557..4822 -
1681464113.2398894-CDS-Ecto-sp13_S_contig8432:5083..51351681464113.2398894-CDS-Ecto-sp13_S_contig8432:5083..5135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8432 5084..5135 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.2513402-UTR-Ecto-sp13_S_contig8432:5135..51471681464113.2513402-UTR-Ecto-sp13_S_contig8432:5135..5147Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8432 5136..5147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8432.19813.1prot_Ecto-sp13_S_contig8432.19813.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8432 4557..5135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8432.19813.1

>prot_Ecto-sp13_S_contig8432.19813.1 ID=prot_Ecto-sp13_S_contig8432.19813.1|Name=mRNA_Ecto-sp13_S_contig8432.19813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MGAVGGGGGERVPRASEVDTRMCKRDRRGAGTVPPLLRLLLPNPLRGDGE
TYRNPTTLVVFLKLDYNDQDSFIHTSTHTPSRDATQHHSYLLSTAPVPPP
IPFISA
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mRNA from alignment at Ecto-sp13_S_contig8432:4557..5147-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8432.19813.1 ID=mRNA_Ecto-sp13_S_contig8432.19813.1|Name=mRNA_Ecto-sp13_S_contig8432.19813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8432:4557..5147- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCGGCGGGATATGGGTGCCGTGGGAGGCGGAGGCGGCGAACGCGTCCC
CCGAGCGTCTGAAGGTCGGTCCGACGTCCGACAGATTCCGTTCATGGCAA
TCGAAGTATGCTGAAGAATGCGAGGCTCTGGTAGTCTTCACGTCTTCCTT
TTCTAGACCCAGGGCACCAACACCACCAACAACAGCTGGGTAGCTGCGTC
GCAGTGATCCTAACCGCCACTCTGTTGCAAATCCTAACTGGTTCCTCCCT
CCCCGCTCTCCTATCTCTTCTTCTCCCGCGCGTGGGCCCATTTTTCCGGC
GGCGCACTGCGGGAATCCCCATCAGTGGACACCCGGATGTGCAAGCGTGA
CCGCCGTGGTGCCGGGACTGTACCTCCTCTCCTGCGGCTTCTTCTCCCAA
ATCCCCTTCGTGGCGACGGTGAGACGTACCGCAACCCCACGACCCTTGTT
GTTTTCCTCAAGCTGGACTACAACGATCAAGATTCTTTCATCCATACCTC
CACCCATACTCCTTCACGTGATGCCACACAACACCACTCGTACCTTTTGT
CCACCGCTCCCGTTCCACCCCCCATTCCATTTATCTCGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8432:4557..5147-

>mRNA_Ecto-sp13_S_contig8432.19813.1 ID=mRNA_Ecto-sp13_S_contig8432.19813.1|Name=mRNA_Ecto-sp13_S_contig8432.19813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8432:4557..5147- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGCCGTGGGAGGCGGAGGCGGCGAACGCGTCCCCCGAGCGTCTGA
AGTGGACACCCGGATGTGCAAGCGTGACCGCCGTGGTGCCGGGACTGTAC
CTCCTCTCCTGCGGCTTCTTCTCCCAAATCCCCTTCGTGGCGACGGTGAG
ACGTACCGCAACCCCACGACCCTTGTTGTTTTCCTCAAGCTGGACTACAA
CGATCAAGATTCTTTCATCCATACCTCCACCCATACTCCTTCACGTGATG
CCACACAACACCACTCGTACCTTTTGTCCACCGCTCCCGTTCCACCCCCC
ATTCCATTTATCTCGGCC
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