mRNA_Ecto-sp13_S_contig8431.19811.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8431.19811.1
Unique NamemRNA_Ecto-sp13_S_contig8431.19811.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8431.19811.1 vs. uniprot
Match: D7G7U7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U7_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.330e-55
Identity = 174/180 (96.67%), Postives = 176/180 (97.78%), Query Frame = 1 
Query:    1 MPFSLTENLPFLALPLALITLKVTYDVLPFMAFVALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIRELTLEEDRAKEEAARKQAAKDXXXXXXXXXXXXXXXXXXXXXXXXXKALAQQEAESKPRSAPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLRMADLERAR 540
            MPFSLTENLPFLALPLALITLKVTYDVLPFMAF+ALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIRELT EEDRAKEEAARKQAAKDXXXXXXXXXXXXXXXXXXXXXXXXXKALAQQEAESKPR+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLRMADLERAR
Sbjct:    1 MPFSLTENLPFLALPLALITLKVTYDVLPFMAFLALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIRELTREEDRAKEEAARKQAAKDXXXXXXXXXXXXXXXXXXXXXXXXXKALAQQEAESKPRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLRMADLERAR 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8431.19811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U7_ECTSI1.330e-5596.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8431contigEcto-sp13_S_contig8431:2083..5752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size543
Hectar predicted targeting categorysignal anchor
Exons6
Ec32 ortholog descriptionNeurotransmitter-gated ion-channel transmembrane domain
Ec32 orthologEc-06_000250.1
Cds size543
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8431.19811.1prot_Ecto-sp13_S_contig8431.19811.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8431 2083..5752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.1442132-CDS-Ecto-sp13_S_contig8431:2082..21541681464113.1442132-CDS-Ecto-sp13_S_contig8431:2082..2154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8431 2083..2154 -
1681464113.156042-CDS-Ecto-sp13_S_contig8431:2768..29331681464113.156042-CDS-Ecto-sp13_S_contig8431:2768..2933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8431 2769..2933 -
1681464113.1692843-CDS-Ecto-sp13_S_contig8431:3200..32701681464113.1692843-CDS-Ecto-sp13_S_contig8431:3200..3270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8431 3201..3270 -
1681464113.1828573-CDS-Ecto-sp13_S_contig8431:3980..40631681464113.1828573-CDS-Ecto-sp13_S_contig8431:3980..4063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8431 3981..4063 -
1681464113.1932034-CDS-Ecto-sp13_S_contig8431:5263..53501681464113.1932034-CDS-Ecto-sp13_S_contig8431:5263..5350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8431 5264..5350 -
1681464113.203812-CDS-Ecto-sp13_S_contig8431:5686..57521681464113.203812-CDS-Ecto-sp13_S_contig8431:5686..5752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8431 5687..5752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8431.19811.1

>prot_Ecto-sp13_S_contig8431.19811.1 ID=prot_Ecto-sp13_S_contig8431.19811.1|Name=mRNA_Ecto-sp13_S_contig8431.19811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
MPFSLTENLPFLALPLALITLKVTYDVLPFMAFVALVAVAVGCYMFYAGK
SSPAAQRTAKKAEATADSLIRELTLEEDRAKEEAARKQAAKDRKAAAKQK
QEAARKAAQAAKEAAAAKALAQQEAESKPRSAPQQQQQPSSSKSKKQSKK
QSKAAPPVEEEDSDDEDDFLLRMADLERAR*
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mRNA from alignment at Ecto-sp13_S_contig8431:2083..5752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8431.19811.1 ID=mRNA_Ecto-sp13_S_contig8431.19811.1|Name=mRNA_Ecto-sp13_S_contig8431.19811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3670bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8431:2083..5752- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTTCTCCCTGACAGAGAACCTCCCATTCCTGGCGCTGCCGCTGGC
CCTGATCACCCTCAAGGTATGGATGCCTGCGGGTAGGGTAGTCAGGAATC
AGGAGCCGTTTCCTTCTCTCGTGTGGTGGTGTTTATCGGACAGTTTATTT
TGCTGCGTAGGCTCGTGTCCACCGCTGGTTCGTTGCTCGCCAACTTCTTG
TGCACTCTTTCGTCGTATCCTCGGGGGGTGGAGTCAAGACGTGGCATGAG
TTCGGTTGTCGGTGGCTTGGCCCCGCTGCGCCGGATCGATTGTGTGTTCT
TGCCTCTCTACTGCTGTTGGATGAGCGGCGCCGCGCTTGTCTCCTAAATC
CTACCCGTTTCCTTCTCCGCACGTGCTCGTGTCTCATTGGACGACGCCAC
AGGTCACCTACGATGTGCTTCCCTTCATGGCCTTCGTGGCGCTGGTCGCT
GTGGCCGTAGGCTGCTACATGTTCTACGCGGGGAAGTCGGTGAGGACGAG
TGCTCGGCATTGCTGCAGAATAGTTGCTGCAGAACCTACTCTGTTGTACG
TATCGTACTGCCAGCACAATTCCAGAAGAATGCTGTCACGAGATTGTGAT
TTCAAGCCTGGATTTTGACCGCCCCCGGCTTGTCCGCGGGGTTGCCTTCA
CACACGTAATCTCCGGAGGTACGTTGTGCGACCTGTTTTGAGAATAGAAG
CGATGGGTGGTTTTGGTTTGAGTGCAGTACATATCGATGTGTCCAGAGTC
AAAGCTTCTGTTTTTTTTTTTGCGTCTGGTCTGCACAAGACCAAAAGCCT
ATGCATACGCATATCTACAAAATCCGGTTCACACAAAACTCGCCAGGGTC
ACACAGCTGGACCACTCTGTCGGCATAACACGGCAGGCAGCACGATTGTA
GACCGTATTTTGTCGAATAGGTGGTTGCCATGAAGTAGGTAGCAGGGGTT
CCAAAGAGTGCTCCACCTCAAAAATAGAGTCTACGATTCGCTGAGACGCG
GTGTCTCTTGATGGAGTATATCCGTGTTGTATCCTGCTGCCTTCTACGGC
TGCCGTAGGCTCATCGTACGCTACGCATAGCTACTGGGTACAGGCCCAAC
AGTTCGCCTGCGTGTGGTGACTCGTCGTTTCCGTTGATTGTCAAAAGTAG
AAGTCTGCCACGCACGGCGTGGGATAACGTCGGAAGGGGTTCGGCATCAT
CTTTTCTACAGCCTGTAATGTATACTCTTGTAGGATAGATACAAGTCCGC
ACTCCCTGCACGGCGGTCGGTATCATAGCCCGGATGTACATGTACCTTTG
AGTATACTCTGTCTTCCCATGGGGCGCCGGAGGGCGGGAGCTGTGCGAAT
ATCGGTCACACTTTCGATGGATACGCGTGGTGCCAGCCATAGCAATATGG
AACGTCAGTGTCACCTGGGTGAAGGAAGTCAGGAAGCGCGATTAGACTAA
CTCCTCAGGAGAGGGACGCGCTTGTACTAAATACTGTATCGGGGCCGCCC
TCTGGGGATGACATCCCCAAGTGTACTCTCAAGCCTGATTCCCGCTTTCC
CTCTGTCGGTCTGGCCGTCCCGCCTGTCTGTCTCTCTGTCTGCCTTGACT
CCTTCCCCTTCACATTGTGGACGATATGGTGCATTGTTCTGGTCGCCACC
ATGGCCCACCGTCCTCTTGCGTCCATGCTGCGGGAACAGAGCCCGGCAGC
GCAGAGGACGGCGAAGAAGGCGGAGGCCACGGCGGACAGCCTGATCCGGG
AGCTCACTCTGGAAGAAGACAGGTGGGCATCGTCATCGTCCATCGCCGAT
CGTCCATCGTAGCATCGTAGGAGACAGGCAGGCAGTAGTAGGCTTCAAAA
CTTGCTTTCAGGACAACTGCGCTCCTTGTTTGGGGGTCCTGTATTTCCAG
TAGAAGCAGGTCTGTAGACGAGAGTTTACCCCTAGCGCTCGCCGGCGAAT
GGATCAACACAAGGTTGGCTTTATACCGGGTGCGGGTGTGCCGCTTTGCA
CCACATGTTACAACGTGCCGTGGGCATTTAGATCCACACCTTACCATTTA
GTAGGATTTATGACACCCCCAGGCCACACCATCCGTAGCCTGTACCAGGG
CACAAGCCGTAATGGTTGTGTACGCCATGAGGGGAAGGAAGTGCCGAGTC
GACCATGAAGGCGAGGAGGCACGCGCACCATGCGCATCTTTTAGACGCGT
CCAGACATGCCAAATGCCCCCACAAAACCGTTCTCGTTCGGTGTTGCGCG
ATCTAGATGTACTGCTGTGGCTGCATCCGAAGCTGCCTTCGACTGTCCCG
TCATCCGTCGAAGCTTAGCAATTGCCTCCCCTCTCTGCCAGAGCCTTTCG
TGCGCCCAGTTCCAGAGCAAGGGGTCTGCCCAATGTTGTGTTGGCCCTCT
TGTAGCTTGGGCCCTGATTCGGTGTAACCCGCGTCCATGTTCCTCGGGAT
GTTGTGTTTGTTACATTGTGATGTACACGCAGGGCGAAGGAGGAGGCGGC
CAGGAAGCAGGCAGCCAAGGACAGGAAGGCGGCCGCGAAGCAGAAACAGG
AGGTGCGTTTTGGCCTGTGGGTCTTCAACCATTAACCCCTCGTTTACGTT
CCGCTGCTGTTGTGGCCGTTGCTCTTGGCCACCTGTACGTGTCCGTCCCT
CCGGCGTGTTTTAGACCTGCACGACCATCACTTCTCTTTTTCTTGCGGAT
TGTTTCGACGCAGGCTGCCCACAGAGCGGCGGCGCCGATGATAAAGTAAA
GGGACCACCTTCCCCGCGTCAATCCTAGCAACCTAACCTGTGCCCCCAAC
CCAAACCTTCCCCTTTTAGGCTGCACGCAAGGCGGCACAGGCAGCTAAGG
AGGCCGCTGCCGCAAAGGCGCTTGCGCAGCAGGAGGCGGAGAGCAAGCCC
CGCTCAGCGCCGCAGCAGCAGCAGCAGCCGTCCTCGAGCAAGTCTAAGAA
GCAGTCTAAGAAGCAGTCCAAGGCCGCCCCACCGGTGAGGGTAATGACCG
TCGTCATGCCGACAGGAGTGATTTCATCATCGGCTATTGTAGCTGTGTCC
CGTGTGACTTCAAGTGTGAAGTATCATGATTTTATTTGGCCTTGGCAAAC
GTGAACGCGGCGTTCCATAATACTGCCAGGTATGTTTTGTTTTTCGCGCC
AGTTCGTGTGTTATTAGTTAATACCTTGCCTCTTAGTTGACCTGGAGCCA
GTTGGCCTTGAGAACCTGGGGCTAGGGTAGCTGCATGGCCGTACATCACC
CCCATCTTCTCCCAGAGCTAGAAGCTTACTGAACCCCCCACCACCACGCA
CGCCAATACAATACTTGTCTACAATAGACCAGGTATGCAGGTGACACCAC
TCAGTACATGGGCGCTGTGAAGCCTTCTGAATGTGTGACGAATCGTTCCG
ACTGGTTTCCCTTTCCCCCTTGCCCCCTTCGCCGTCCTGCTGCATGGACA
ACGGTCGGCGCCCCGCCCGCTGCTGCTTTGATTGGCTATCGACGATGGCG
AATGGCTCGGATTGGTCGGGTCAAACGCCGAATCTCATGGGCTGGGCTTG
AATGGATGTCTGTGATTGGCTGGGCCACTGGATGCGTTGGCGAGACAGGT
GGAAGAAGAGGACTCGGACGACGAAGACGACTTCCTTCTGCGCATGGCCG
ACCTTGAACGGGCGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8431:2083..5752-

>mRNA_Ecto-sp13_S_contig8431.19811.1 ID=mRNA_Ecto-sp13_S_contig8431.19811.1|Name=mRNA_Ecto-sp13_S_contig8431.19811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8431:2083..5752- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTTCTCCCTGACAGAGAACCTCCCATTCCTGGCGCTGCCGCTGGC
CCTGATCACCCTCAAGGTCACCTACGATGTGCTTCCCTTCATGGCCTTCG
TGGCGCTGGTCGCTGTGGCCGTAGGCTGCTACATGTTCTACGCGGGGAAG
TCGAGCCCGGCAGCGCAGAGGACGGCGAAGAAGGCGGAGGCCACGGCGGA
CAGCCTGATCCGGGAGCTCACTCTGGAAGAAGACAGGGCGAAGGAGGAGG
CGGCCAGGAAGCAGGCAGCCAAGGACAGGAAGGCGGCCGCGAAGCAGAAA
CAGGAGGCTGCACGCAAGGCGGCACAGGCAGCTAAGGAGGCCGCTGCCGC
AAAGGCGCTTGCGCAGCAGGAGGCGGAGAGCAAGCCCCGCTCAGCGCCGC
AGCAGCAGCAGCAGCCGTCCTCGAGCAAGTCTAAGAAGCAGTCTAAGAAG
CAGTCCAAGGCCGCCCCACCGGTGGAAGAAGAGGACTCGGACGACGAAGA
CGACTTCCTTCTGCGCATGGCCGACCTTGAACGGGCGAGGTGA
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