mRNA_Ecto-sp13_S_contig12396.1982.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12396.1982.1
Unique NamemRNA_Ecto-sp13_S_contig12396.1982.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12396.1982.1 vs. uniprot
Match: A0A6H5KWB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWB1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.790e-21
Identity = 126/181 (69.61%), Postives = 128/181 (70.72%), Query Frame = 1 
Query:   10 TGRGAKGRGAVAAGTAEKGGEAEAGSGDDADEEKGDKPSPAKKQKRGASRAAAAPSTPPSRRSPRVPTSATPDHVGDNEVKSKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSARTATAGAGAST----GRVGGRRPPRVRGAVPAAAEASASGRGNTRGKGRRDDSEN 540
            TGRG KGRGAVAA TAEK GEA                        GAS AAAA STPPSRRSPRV TSATPD V D EVKSKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P + TATAG         G  GGRRPP VRGAVPAAA    SGRGN RGKGR+DDSEN
Sbjct: 1470 TGRGPKGRGAVAAETAEKSGEAGXXXXXXXXXXXXXXXXXXXXXXXGASGAAAAGSTPPSRRSPRVSTSATPDRVRDTEVKSKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSLTATAGXXXXXXXXXGCAGGRRPPMVRGAVPAAAAXXXSGRGNARGKGRKDDSEN 1650
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BLAST of mRNA_Ecto-sp13_S_contig12396.1982.1 vs. uniprot
Match: D7FVV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-8
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  136 KQKRGASRAAAAPSTPPSRRSPRVPTSATPDHVGDNEVKSK 258
            KQKRGASR AAAPSTPPSRRSPRV TSATPDHVGDNE  S+
Sbjct: 1641 KQKRGASRTAAAPSTPPSRRSPRVATSATPDHVGDNEETSQ 1681
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12396.1982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWB1_9PHAE3.790e-2169.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVV7_ECTSI1.330e-887.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12396contigEcto-sp13_S_contig12396:4008..4551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score65.5
Seed ortholog evalue3e-08
Seed eggNOG ortholog2880.D7FVV7
Model size544
KEGG koko:K11267
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.mitotic sister chromatid cohesion
EggNOG OGsKOG1525@1,KOG1525@2759
Cds size543
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462659.2059505-CDS-Ecto-sp13_S_contig12396:4007..45501681462659.2059505-CDS-Ecto-sp13_S_contig12396:4007..4550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12396 4008..4550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12396.1982.1prot_Ecto-sp13_S_contig12396.1982.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12396 4008..4550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12396.1982.1

>prot_Ecto-sp13_S_contig12396.1982.1 ID=prot_Ecto-sp13_S_contig12396.1982.1|Name=mRNA_Ecto-sp13_S_contig12396.1982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
SSSTGRGAKGRGAVAAGTAEKGGEAEAGSGDDADEEKGDKPSPAKKQKRG
ASRAAAAPSTPPSRRSPRVPTSATPDHVGDNEVKSKTAAGGGGGGGRKKA
APLPARKPLQQQQEQQQAKPVAAKKKPSARTATAGAGASTGRVGGRRPPR
VRGAVPAAAEASASGRGNTRGKGRRDDSENE
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mRNA from alignment at Ecto-sp13_S_contig12396:4008..4551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12396.1982.1 ID=mRNA_Ecto-sp13_S_contig12396.1982.1|Name=mRNA_Ecto-sp13_S_contig12396.1982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12396:4008..4551+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAGTAGTACCGGGCGGGGAGCGAAAGGAAGAGGTGCGGTGGCGGCGGG
GACGGCAGAGAAAGGCGGTGAAGCAGAAGCGGGTTCGGGTGACGACGCGG
ACGAGGAAAAAGGGGACAAGCCCTCTCCAGCCAAGAAGCAGAAACGGGGT
GCCAGCAGGGCTGCTGCTGCCCCTTCCACACCTCCGTCTCGCCGATCTCC
CAGGGTGCCGACGTCGGCAACCCCTGATCATGTCGGAGACAATGAGGTGA
AGAGCAAGACCGCTGCCGGCGGCGGAGGCGGCGGCGGGCGCAAGAAGGCG
GCCCCTCTCCCAGCCAGGAAACCCCTGCAGCAGCAGCAGGAGCAGCAGCA
GGCGAAGCCGGTAGCCGCGAAGAAGAAGCCCTCCGCCCGTACCGCTACCG
CTGGTGCTGGTGCTAGTACCGGTCGTGTTGGGGGGAGGAGACCTCCCAGG
GTAAGGGGTGCGGTGCCGGCGGCGGCCGAGGCTTCGGCCTCGGGGCGGGG
GAACACGAGGGGAAAAGGGCGCAGGGACGATAGCGAGAACGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12396:4008..4551+

>mRNA_Ecto-sp13_S_contig12396.1982.1 ID=mRNA_Ecto-sp13_S_contig12396.1982.1|Name=mRNA_Ecto-sp13_S_contig12396.1982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12396:4008..4551+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAGTAGTACCGGGCGGGGAGCGAAAGGAAGAGGTGCGGTGGCGGCGGG
GACGGCAGAGAAAGGCGGTGAAGCAGAAGCGGGTTCGGGTGACGACGCGG
ACGAGGAAAAAGGGGACAAGCCCTCTCCAGCCAAGAAGCAGAAACGGGGT
GCCAGCAGGGCTGCTGCTGCCCCTTCCACACCTCCGTCTCGCCGATCTCC
CAGGGTGCCGACGTCGGCAACCCCTGATCATGTCGGAGACAATGAGGTGA
AGAGCAAGACCGCTGCCGGCGGCGGAGGCGGCGGCGGGCGCAAGAAGGCG
GCCCCTCTCCCAGCCAGGAAACCCCTGCAGCAGCAGCAGGAGCAGCAGCA
GGCGAAGCCGGTAGCCGCGAAGAAGAAGCCCTCCGCCCGTACCGCTACCG
CTGGTGCTGGTGCTAGTACCGGTCGTGTTGGGGGGAGGAGACCTCCCAGG
GTAAGGGGTGCGGTGCCGGCGGCGGCCGAGGCTTCGGCCTCGGGGCGGGG
GAACACGAGGGGAAAAGGGCGCAGGGACGATAGCGAGAACGAG
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