mRNA_Ecto-sp13_S_contig843.19808.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig843.19808.1
Unique NamemRNA_Ecto-sp13_S_contig843.19808.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig843.19808.1 vs. uniprot
Match: D8LHG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG0_ECTSI)

HSP 1 Score: 1346 bits (3484), Expect = 0.000e+0
Identity = 719/820 (87.68%), Postives = 754/820 (91.95%), Query Frame = 1 
Query:  349 MEWSGNFSKEQYLALAQDIGEEDTPGIVTLESFKVVAESGSVPLYPEFSPLRREKGTTVVDSAVKDTLQGPSGLDDGGGGDACHVAEFDDTAREENRSCARRAKGAEGSGTAAQETFHVTLRKAASQARSAGQDVWKLLDDSIQAGLAATQPSEDEETLTSDDVAAQPSVSHDVLRRFLSKLDVQVLPSPVLSPPSRPQSTVPQGDDEAAVVSSFLSIRNAFEERSKGSRGGSPIKHGAPAPSPPPLSSAGGALAPEGERGRAAAVSSACDRYLRILSRDTARVRSRMQLYHQELARMQGEAESLISHSAAVNTKSLPLSAGPDAEGGCEQPPRVSLDASTGSGSLCASPGSARTGGTRSRCGEGGRGIAIIPVEVGGRTTEMAGGRGGGGTVSVIPSDGPVSAFSRVSPVERADPSHPKLEIKRRPCSTPRRKEAGAQPASXXXXXXXXXXXXXXXDSGGGGVDGEPRTRAGAHGGESTDDNGTKIVRSDRVAKLLLATLAGTIEKRSLSPVPPSPACEERRIAVAPKAACFDRPSVRNGLAGLTADEVDKVLLRVEASTPGAVSCWKSPASSRRGPQTCGTESLTPSTGGWELTAEAQQRHRQRDRARGDRFGWFDAEGSPRVWGSSGKRGEGMEGRIISGAEGRGGGGARRVRQMMKITQQPQQMLPNHGDSGMFRVPSSTARKPMDRRNTWGIEQTQWAGSGGENHDASENFIGSNPMYTHKAEVAEKRTFSAQKYHASPKKAGVANSSASRSSTVSQGSSHHEGHSSSATARNTRRPVRAFERLDEDMYDGFLHCAKKNTGKTSSRGFRRAFGDG 2808
            MEWSGNFSKE+YLALAQDIGE DTPGIVTLESFKVVAESGSVPLYPE+SP R+EKGTTVVDS+ K+TLQ PSGLDDGGGG+ACHVAEFDDTAR+E+RSCARRAKGA GSGTAAQET HVTLRKAASQARSAGQDVWKLLDDSIQAGLA TQPSED++TLTSDDVAAQPSVS DVLR+FLSKLDVQVLPSPVLS PSRPQS VPQG DEAAVVSSFLSIRNAFEERSK SRGGSPIKHGA APSPP LSSAGGALA EGERGRAAAVSSACDRYLRILSRD A VRSR+QLY+QELARMQGEAESLISHSA VN +  P+SAGPDA+GGCEQPPRVSLDASTGSGSL ASPGS RTGGTRSRCG+GGRGIA+IPVEVGGRTTEMAGGR GGGTVSV+PSDGPVSAFSR+SPVERADPSHPKLEIKRRPCSTPRRKEAGAQP S                     VDGEPRT AG HGGESTDDNGTKIVRSDRVAKLLLATLAGTIEKRSLSPVPPSPA EERRIAVAPKAACFDRPSVRNGLAGLTADEVDKVLLRVEASTPGAVS WKSPASSRRGPQTCGTESLTPSTGGWELTAEAQQRHRQRDRAR D FGWFDAEGSPR  GSSGKRGEG+ GRIISGAEGRGGGG RRVRQMMKITQQPQQM  NH D+G+FRVP ST RKP+DRRNTWGIEQTQWAGSG E+ DASENFIGSNPMYTH+ +VAEKRTFSAQK+HASPKKAGVAN SASRSS VSQG+S+HEGHSS+ATARNTRRPVRAF+RLDED+YDGFLHCAKKNTGKT+SRGFR+AFGDG
Sbjct:    1 MEWSGNFSKEEYLALAQDIGEGDTPGIVTLESFKVVAESGSVPLYPEYSPRRKEKGTTVVDSSAKNTLQDPSGLDDGGGGEACHVAEFDDTARDESRSCARRAKGAGGSGTAAQETLHVTLRKAASQARSAGQDVWKLLDDSIQAGLAETQPSEDDKTLTSDDVAAQPSVSQDVLRQFLSKLDVQVLPSPVLSSPSRPQSIVPQGGDEAAVVSSFLSIRNAFEERSKDSRGGSPIKHGALAPSPPSLSSAGGALASEGERGRAAAVSSACDRYLRILSRDAASVRSRVQLYNQELARMQGEAESLISHSATVNKRISPISAGPDADGGCEQPPRVSLDASTGSGSLWASPGSVRTGGTRSRCGDGGRGIAVIPVEVGGRTTEMAGGRRGGGTVSVVPSDGPVSAFSRISPVERADPSHPKLEIKRRPCSTPRRKEAGAQPGSPSSPARGGLGRYPGHXXXXXXVDGEPRTPAGVHGGESTDDNGTKIVRSDRVAKLLLATLAGTIEKRSLSPVPPSPAFEERRIAVAPKAACFDRPSVRNGLAGLTADEVDKVLLRVEASTPGAVSSWKSPASSRRGPQTCGTESLTPSTGGWELTAEAQQRHRQRDRARDDSFGWFDAEGSPRFLGSSGKRGEGIAGRIISGAEGRGGGGTRRVRQMMKITQQPQQMPQNHEDNGVFRVPPSTGRKPIDRRNTWGIEQTQWAGSGEEHQDASENFIGSNPMYTHQEDVAEKRTFSAQKHHASPKKAGVANPSASRSSAVSQGNSNHEGHSSTATARNTRRPVRAFQRLDEDVYDGFLHCAKKNTGKTNSRGFRKAFGDG 820
[Close]
BLAST of mRNA_Ecto-sp13_S_contig843.19808.1 vs. uniprot
Match: A0A6H5KVS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS4_9PHAE)

HSP 1 Score: 1328 bits (3436), Expect = 0.000e+0
Identity = 717/820 (87.44%), Postives = 748/820 (91.22%), Query Frame = 1 
Query:  349 MEWSGNFSKEQYLALAQDIGEEDTPGIVTLESFKVVAESGSVPLYPEFSPLRREKGTTVVDSAVKDTLQGPSGLDDGGGGDACHVAEFDDTAREENRSCARRAKGAEGSGTAAQETFHVTLRKAASQARSAGQDVWKLLDDSIQAGLAATQPSEDEETLTSDDVAAQPSVSHDVLRRFLSKLDVQVLPSPVLSPPSRPQSTVPQGDDEAAVVSSFLSIRNAFEERSKGSRGGSPIKHGAPAPSPPPLSSAGGALAPEGERGRAAAVSSACDRYLRILSRDTARVRSRMQLYHQELARMQGEAESLISHSAAVNTKSLPLSAGPDAEGGCEQPPRVSLDASTGSGSLCASPGSARTGGTRSRCGEGGRGIAIIPVEVGGRTTEMAGGRGGGGTVSVIPSDGPVSAFSRVSPVERADPSHPKLEIKRRPCSTPRRKEAGAQPASXXXXXXXXXXXXXXXDSGGGGVDGEPRTRAGAHGGESTDDNGTKIVRSDRVAKLLLATLAGTIEKRSLSPVPPSPACEERRIAVAPKAACFDRPSVRNGLAGLTADEVDKVLLRVEASTPGAVSCWKSPASSRRGPQTCGTESLTPSTGGWELTAEAQQRHRQRDRARGDRFGWFDAEGSPRVWGSSGKRGEGMEGRIISGAEGRGGGGARRVRQMMKITQQPQQMLPNHGDSGMFRVPSSTARKPMDRRNTWGIEQTQWAGSGGENHDASENFIGSNPMYTHKAEVAEKRTFSAQKYHASPKKAGVANSSASRSSTVSQGSSHHEGHSSSATARNTRRPVRAFERLDEDMYDGFLHCAKKNTGKTSSRGFRRAFGDG 2808
            M WSGNFSKE+YLALAQDIGE DTPGIVTLESFKVVAESGSVPL+PE+SP RRE+G  VVDSA +DT+QGPSGLD  GGG+ACHVAEFDDTAR+E+RSCARRAKG  GSGTAAQET HVTLRKAASQARSAGQDVWKLLDDSIQA LA TQPSED+ETLTSDDV AQ S+S DVLRRFLSKLDVQVLPSPVLSPPSRPQS VPQG DEAAVVSSFLSIRN FEERSKGSRGGSPIKHGAPAPSPP LSSAGGALA E ERGRAAAVSSACDRYLRILSRDTA VRSR+QLY+QELARMQ EAESLISHSAAVN KSLPLSAGPDA+GGCE PP VSLDASTGSGSL AS GS RTGGTRSRCG+G RG+AI PVEVGGRTTEMAGGRGG GTV V+PSDGPVSAFSR+SPVERADPSHPKLEIKRRPCSTPRRKEAGAQ AS               D GGGGVDGEPRT AG  GGESTDDNGTKIVRSDRVAKLLLATLAGTIEKRSLSPVPPSPA E+RRIAVAPKAACFDRPSVRNGLAGLTADEVDKVLLRVEASTPGAVSCWKSPASSR+GPQTCGTESLTPSTGGWELTAEA+QRHRQRDRARGD FGWFDAE SPR  GSSGKRGEGMEGRI SGAE RGGGGARRVRQMMKITQQPQQM PNHGDSGMFRVPSSTARKP DRRNTWGIEQTQWAGSG E+ DASE+FIGSNPMY H+AEVAEK T +AQK+HASPKKA VAN SASRSST+SQGSSHHEG SS+ATARNTRRPVRAF+RLDEDMYDGFLHCAK+NTGKT+SRGFRRAFG G
Sbjct:    1 MGWSGNFSKEEYLALAQDIGEGDTPGIVTLESFKVVAESGSVPLHPEYSPRRRERGKNVVDSAAEDTVQGPSGLD--GGGEACHVAEFDDTARDESRSCARRAKGV-GSGTAAQETLHVTLRKAASQARSAGQDVWKLLDDSIQASLAETQPSEDDETLTSDDVGAQLSLSQDVLRRFLSKLDVQVLPSPVLSPPSRPQSIVPQGGDEAAVVSSFLSIRNTFEERSKGSRGGSPIKHGAPAPSPPSLSSAGGALASEEERGRAAAVSSACDRYLRILSRDTASVRSRVQLYNQELARMQREAESLISHSAAVNAKSLPLSAGPDADGGCEHPPHVSLDASTGSGSLWASLGSVRTGGTRSRCGDGDRGMAIFPVEVGGRTTEMAGGRGGDGTVRVVPSDGPVSAFSRISPVERADPSHPKLEIKRRPCSTPRRKEAGAQLASPSNPARGGLGRHPGHDGGGGGVDGEPRTPAGVQGGESTDDNGTKIVRSDRVAKLLLATLAGTIEKRSLSPVPPSPAFEQRRIAVAPKAACFDRPSVRNGLAGLTADEVDKVLLRVEASTPGAVSCWKSPASSRKGPQTCGTESLTPSTGGWELTAEAKQRHRQRDRARGDSFGWFDAEESPRFRGSSGKRGEGMEGRITSGAEXRGGGGARRVRQMMKITQQPQQMSPNHGDSGMFRVPSSTARKPRDRRNTWGIEQTQWAGSGEEDQDASESFIGSNPMYKHQAEVAEKHTLTAQKHHASPKKACVANLSASRSSTLSQGSSHHEGDSSTATARNTRRPVRAFQRLDEDMYDGFLHCAKQNTGKTNSRGFRRAFGVG 817
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig843.19808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHG0_ECTSI0.000e+087.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVS4_9PHAE0.000e+087.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig843contigEcto-sp13_S_contig843:207..4908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2811
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004220.1
Cds size2811
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig843.19808.1prot_Ecto-sp13_S_contig843.19808.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig843 207..4908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464112.6931362-CDS-Ecto-sp13_S_contig843:206..5881681464112.6931362-CDS-Ecto-sp13_S_contig843:206..588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig843 207..588 -
1681464112.7058978-CDS-Ecto-sp13_S_contig843:902..25971681464112.7058978-CDS-Ecto-sp13_S_contig843:902..2597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig843 903..2597 -
1681464112.7219436-CDS-Ecto-sp13_S_contig843:3090..32241681464112.7219436-CDS-Ecto-sp13_S_contig843:3090..3224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig843 3091..3224 -
1681464112.7343142-CDS-Ecto-sp13_S_contig843:3532..38111681464112.7343142-CDS-Ecto-sp13_S_contig843:3532..3811Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig843 3533..3811 -
1681464112.7511244-CDS-Ecto-sp13_S_contig843:4109..42081681464112.7511244-CDS-Ecto-sp13_S_contig843:4109..4208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig843 4110..4208 -
1681464112.7652109-CDS-Ecto-sp13_S_contig843:4686..49081681464112.7652109-CDS-Ecto-sp13_S_contig843:4686..4908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig843 4687..4908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig843.19808.1

>prot_Ecto-sp13_S_contig843.19808.1 ID=prot_Ecto-sp13_S_contig843.19808.1|Name=mRNA_Ecto-sp13_S_contig843.19808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=937bp
MSRRRPLEISGRNISSGTDGEQKTGDQDDDTTAPLAVSEKDLAELCRMDT
WDIKSMIRPDTTRIGKAFHSMMEGRRSLKRHQDPNIAIERCFTAFSGRGK
TSLTTREFARRLSTLSMEWSGNFSKEQYLALAQDIGEEDTPGIVTLESFK
VVAESGSVPLYPEFSPLRREKGTTVVDSAVKDTLQGPSGLDDGGGGDACH
VAEFDDTAREENRSCARRAKGAEGSGTAAQETFHVTLRKAASQARSAGQD
VWKLLDDSIQAGLAATQPSEDEETLTSDDVAAQPSVSHDVLRRFLSKLDV
QVLPSPVLSPPSRPQSTVPQGDDEAAVVSSFLSIRNAFEERSKGSRGGSP
IKHGAPAPSPPPLSSAGGALAPEGERGRAAAVSSACDRYLRILSRDTARV
RSRMQLYHQELARMQGEAESLISHSAAVNTKSLPLSAGPDAEGGCEQPPR
VSLDASTGSGSLCASPGSARTGGTRSRCGEGGRGIAIIPVEVGGRTTEMA
GGRGGGGTVSVIPSDGPVSAFSRVSPVERADPSHPKLEIKRRPCSTPRRK
EAGAQPASPSSPARGGLGGHPGHDSGGGGVDGEPRTRAGAHGGESTDDNG
TKIVRSDRVAKLLLATLAGTIEKRSLSPVPPSPACEERRIAVAPKAACFD
RPSVRNGLAGLTADEVDKVLLRVEASTPGAVSCWKSPASSRRGPQTCGTE
SLTPSTGGWELTAEAQQRHRQRDRARGDRFGWFDAEGSPRVWGSSGKRGE
GMEGRIISGAEGRGGGGARRVRQMMKITQQPQQMLPNHGDSGMFRVPSST
ARKPMDRRNTWGIEQTQWAGSGGENHDASENFIGSNPMYTHKAEVAEKRT
FSAQKYHASPKKAGVANSSASRSSTVSQGSSHHEGHSSSATARNTRRPVR
AFERLDEDMYDGFLHCAKKNTGKTSSRGFRRAFGDG*
back to top

mRNA from alignment at Ecto-sp13_S_contig843:207..4908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig843.19808.1 ID=mRNA_Ecto-sp13_S_contig843.19808.1|Name=mRNA_Ecto-sp13_S_contig843.19808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig843:207..4908- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTAGACGCCGGCCTCTAGAAATTAGCGGGAGGAACATCAGCAGTGG
CACCGATGGCGAGCAGAAAACCGGAGATCAAGACGACGACACCACAGCAC
CACTGGCAGTGAGCGAGAAAGATCTGGCTGAGCTGTGCCGGATGGATACT
TGGGATATCAAGAGCATGATCCGTCCGGACACCACGCGTATTGGAAAAGC
GTTCCACTCAATGATGGAGGGGGTAAAGGCAAGTGGTACAATTGCAATAT
GTGCATTTGAAAATGTTCCCTGCTCGCAGTCGTCACTACGGGGTACAAAC
TTTCCGACAAAACGTAGACGGCAGCAACTGGTAGACCTTACAGCCTGAAT
TACGTGACATCCGGAAACCGAGATGATCACTATCGTCTGCCGACCGTTCA
AAAGCACCTGCTGCGTTCGGGCGTACGACAGCCATCTTCCTATTCATGAT
AGGGCAATGTAGTCAGGTGGCCACACGCGAACGGCAAGTGCTCCGAATCT
AGTCAAAATGCCTAGCGCATACCGAAGTAGTATAAAAAACTGGTGCTTGT
CATTGAGTTCCACCAATCAATCGTGACTACACCGACATGCATTTCACTCT
CAGTCCAGCATTGAACCCGTAGGCTACTGTACAACCCTTCATTTCTTAAG
ATTGTGGTGGAAATTTCTCTCGTCACTTGTAATTTTGCCGCACAACTCAG
AGAAGAAGCCTCAAGAGACATCAAGATCCGAACATCGCCATCGAACGCTG
CTTCACGGCGTTTTCTGGGCGTGGCAAAACCTCGCTGACCACCCGTGAGG
TACGTACAGTGGTTTTGACACGGGGGCGAGTTGCAGGCACCCCTGAATGT
TGTACTTCGTACATCATTTGCCTCGGAAGTCCTGCTGTCGATGTAGGGGA
TCTGCGCAACCCCTTTATGCTGCGCATGCCCCGCACTTTCCACATGAGCG
AATGTGAAAAATCGCATGCATGCCTGTTTAGAACATTCTGCACTTCCCCG
ATACATATCCCTCGTACCTTGGGTGGTTCGCCCTAACACCACGCCGTCCT
CGGGTCGCACAAACTTCGATGGTTTTGATAACAACACTCGGCCAAAGTTC
GCCCGGCGGCTGAGTACGCTGAGCATGGAGTGGAGCGGCAACTTCTCCAA
GGAGCAGTACCTTGCTCTTGCCCAGGACATCGGCGAGGAGGACACCCCAG
GCATCGTCACCCTCGAGTCTTTCAAAGTCGTTGCGGAATCTGGCTCCGTG
CCCCTCTATCCGGAGTTTTCACCGCTCCGCAGAGAAAAGGGAACAACCGT
GGTCGACAGTGCGGTGAAAGATACCTTACAAGGCCCCAGCGGTCTTGATG
ATGGCGGTGGTGGCGACGCATGTCATGTGAGTTCCGCGTCGGGTTTGACA
GGGTGACAGGCGAACTCGAGGCAAGGGCGGTGAATTGGGATGGTGGGCAT
CGACAATTTTGGGAGGCACGTAATGGGGTGCACTCACGTCCAAGGTACTG
CGTAGTGCTTCCTCGGCCCTCCCCATGTGAAAGCTGTTTAGCCGGAGGCG
TGTCCCCATCCCACGTGTCCCGCAGTATGTAGCACAATAGATCAATATTT
GGCAGAAGTTGCTTGTTTTCTTACATCATACCACTTGTTTGTTGGACGAT
TCCTCTGCGATTCCTCGGGAATCACCCGATCCAGGTAGCTGAATTTGACG
ACACGGCTAGGGAGGAAAATAGGTCGTGCGCACGAAGAGCGAAGGGTGCG
GAGGGAAGCGGCACTGCTGCCCAGGAAACCTTCCACGTAACCCTGCGAAA
GGCTGCTTCCCAAGCTAGGTGAGTTTCAGTTCTCCAGATTTGGCGCGTGT
ATTTTGTAGCGAAGTTGCCTTGCAGACGCCGTTTGCTCTGGAAATTGTGT
TATTTCCGCGAATGTCGGCTAAACAGTCCACAGGACAAAGGCTGAGGAAG
GGCTTCCCTCCATGGTTCGGGCGGCTGTGAAGGTTGTTTGGAAAACCAAT
GGCGCTCAATCGTTGCATCGAGCATGTTCCAAGTACGTCACTAGGTCCTC
ATTTCCTTGTGTTGGACAAGAGTAGAGGTGAACTTCGCTTGCCGAAGCGC
TCGATTCAGGGATCCAACATGGCAACTTTTCGAATGCCCATGATGTTTTG
AGGTATCCCCTCTGCACACAATACTCAGAAAAGCAAGACAACCGGCTTCC
CTCTTGCAGTCCACATCCCTTGGAGCATCTCACCCCTTTCAACCGCGCGA
CAACTTGGCGCTCGGCCTGCTTGCCTACACTTTTCTGGTTTCCGACTACC
CCCTTCATCAGGTCAGCTGGGCAAGATGTCTGGAAGCTGCTCGATGACAG
CATCCAAGCGGGTCTCGCGGCGACCCAGCCCAGCGAAGACGAGGAAACGC
TCACGAGCGACGACGTGGCCGCGCAGCCATCTGTGAGCCACGACGTTCTC
CGCCGATTTTTGTCCAAGCTCGACGTCCAGGTACTCCCGTCGCCGGTGCT
GTCGCCACCCTCCCGCCCGCAGTCGACCGTGCCCCAAGGAGACGACGAGG
CTGCAGTAGTGTCATCGTTCTTGTCGATCAGGAACGCGTTCGAGGAAAGA
AGCAAGGGTTCGCGGGGAGGGAGCCCAATCAAACACGGAGCACCGGCTCC
ATCGCCGCCGCCGCTGTCGTCCGCCGGCGGCGCGTTGGCCCCGGAGGGAG
AGAGAGGGCGAGCGGCGGCGGTATCCTCGGCCTGCGACCGCTACCTGCGG
ATCCTTTCGAGGGACACCGCGAGGGTGCGCTCCCGCATGCAGCTCTACCA
CCAGGAGCTCGCACGCATGCAAGGAGAAGCCGAGTCTCTGATTTCGCATT
CGGCCGCAGTCAATACGAAGAGCTTGCCGTTGTCGGCGGGACCTGATGCT
GAAGGCGGCTGCGAGCAGCCCCCGCGCGTGTCTCTTGACGCGAGTACCGG
CAGCGGTTCCCTGTGCGCGTCCCCCGGTAGCGCCAGGACGGGAGGAACAA
GGAGCAGATGCGGCGAAGGTGGCAGGGGAATTGCCATCATCCCCGTCGAG
GTAGGCGGCAGGACGACAGAGATGGCCGGGGGTCGTGGCGGCGGCGGAAC
CGTGAGTGTAATCCCCTCTGACGGACCGGTCTCGGCGTTCTCGAGAGTCA
GCCCCGTGGAGCGAGCAGACCCCAGCCACCCTAAGCTGGAAATCAAACGG
AGGCCCTGCAGCACGCCCAGGAGAAAGGAGGCAGGCGCACAACCAGCATC
ACCGTCGAGCCCCGCCCGTGGTGGCCTGGGGGGACACCCGGGTCATGACA
GCGGTGGTGGTGGGGTCGACGGCGAGCCTCGGACGCGTGCGGGCGCACAC
GGGGGGGAAAGTACCGACGACAACGGAACCAAGATCGTCAGGAGTGACCG
CGTCGCAAAGCTGTTGCTAGCGACGCTTGCAGGAACGATCGAGAAGCGCT
CGCTGTCTCCGGTGCCTCCCTCCCCTGCGTGTGAAGAAAGGAGAATAGCT
GTTGCGCCCAAGGCCGCTTGCTTTGACCGTCCGTCCGTCCGGAACGGACT
GGCGGGGCTGACCGCGGATGAGGTGGACAAGGTGTTGCTAAGGGTGGAGG
CGTCTACGCCTGGGGCAGTGTCGTGCTGGAAGTCTCCGGCGAGTAGTAGA
AGAGGACCGCAAACCTGCGGGACGGAGAGCTTAACCCCGTCTACAGGCGG
CTGGGAATTGACGGCGGAGGCGCAGCAGCGGCATCGACAGAGAGACAGAG
CTCGGGGTGATCGCTTTGGCTGGTTCGACGCCGAAGGAAGTCCAAGGGTT
TGGGGGTCAAGTGGAAAAAGAGGGGAGGGAATGGAGGGAAGGATCATATC
TGGAGCAGAAGGAAGGGGAGGCGGAGGGGCAAGAAGAGTAAGACAGATGA
TGAAGATCACCCAGCAACCGCAGCAAATGCTGCCGAATCACGGGGACAGT
GGCATGTTTCGGGTCCCATCATCAACAGCTCGAAAACCGATGGACCGAAG
AAATACGTGAGTGACATACGGGGTCATTGCTTACTGTTCTGTTGGGTCTG
TTGCGAAGGCAACTGTGTAGGTTAACAAGCAATGGTACTAGGCGTAAGTC
AAGCTCCCTACTGATGGGGAAAGGCGACCAGAGAAATGAGTTTATTGCCA
GAGATACGATTGTCGGGGCTTGCGGTCATCGGTTTTCGACGTCCGCTGTT
AACGGCGAGCGTTTGAAAGAGCTTCGCCTCCGAGTGGATTGAGGTGTGCC
CGAACGCAGCACGCGCTTTTCTGCTATTGCCCATTGCTGAACGACCGCTG
GCAATCGTTCTCCACGGCAGGTGGGGCATCGAGCAAACGCAATGGGCTGG
CTCAGGCGGAGAAAATCATGACGCCAGTGAAAATTTCATTGGGAGCAACC
CGATGTACACGCACAAGGCGGAGGTTGCCGAGAAGCGCACTTTTTCCGCT
CAAAAGTACCACGCTTCTCCCAAGAAGGCCGGTGTCGCCAACTCATCCGC
CTCCCGATCATCTACTGTTAGTCAAGGGAGCAGTCATCACGAAGGCCACT
CTTCATCCGCCACCGCGCGTAACACGCGCCGTCCCGTGCGGGCCTTCGAG
CGGTTAGACGAAGACATGTACGACGGCTTCCTACACTGTGCCAAGAAAAA
CACCGGCAAGACTAGCAGCAGGGGGTTCAGGAGGGCTTTCGGAGATGGAT
GA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig843:207..4908-

>mRNA_Ecto-sp13_S_contig843.19808.1 ID=mRNA_Ecto-sp13_S_contig843.19808.1|Name=mRNA_Ecto-sp13_S_contig843.19808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2811bp|location=Sequence derived from alignment at Ecto-sp13_S_contig843:207..4908- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTAGACGCCGGCCTCTAGAAATTAGCGGGAGGAACATCAGCAGTGG
CACCGATGGCGAGCAGAAAACCGGAGATCAAGACGACGACACCACAGCAC
CACTGGCAGTGAGCGAGAAAGATCTGGCTGAGCTGTGCCGGATGGATACT
TGGGATATCAAGAGCATGATCCGTCCGGACACCACGCGTATTGGAAAAGC
GTTCCACTCAATGATGGAGGGGAGAAGAAGCCTCAAGAGACATCAAGATC
CGAACATCGCCATCGAACGCTGCTTCACGGCGTTTTCTGGGCGTGGCAAA
ACCTCGCTGACCACCCGTGAGTTCGCCCGGCGGCTGAGTACGCTGAGCAT
GGAGTGGAGCGGCAACTTCTCCAAGGAGCAGTACCTTGCTCTTGCCCAGG
ACATCGGCGAGGAGGACACCCCAGGCATCGTCACCCTCGAGTCTTTCAAA
GTCGTTGCGGAATCTGGCTCCGTGCCCCTCTATCCGGAGTTTTCACCGCT
CCGCAGAGAAAAGGGAACAACCGTGGTCGACAGTGCGGTGAAAGATACCT
TACAAGGCCCCAGCGGTCTTGATGATGGCGGTGGTGGCGACGCATGTCAT
GTAGCTGAATTTGACGACACGGCTAGGGAGGAAAATAGGTCGTGCGCACG
AAGAGCGAAGGGTGCGGAGGGAAGCGGCACTGCTGCCCAGGAAACCTTCC
ACGTAACCCTGCGAAAGGCTGCTTCCCAAGCTAGGTCAGCTGGGCAAGAT
GTCTGGAAGCTGCTCGATGACAGCATCCAAGCGGGTCTCGCGGCGACCCA
GCCCAGCGAAGACGAGGAAACGCTCACGAGCGACGACGTGGCCGCGCAGC
CATCTGTGAGCCACGACGTTCTCCGCCGATTTTTGTCCAAGCTCGACGTC
CAGGTACTCCCGTCGCCGGTGCTGTCGCCACCCTCCCGCCCGCAGTCGAC
CGTGCCCCAAGGAGACGACGAGGCTGCAGTAGTGTCATCGTTCTTGTCGA
TCAGGAACGCGTTCGAGGAAAGAAGCAAGGGTTCGCGGGGAGGGAGCCCA
ATCAAACACGGAGCACCGGCTCCATCGCCGCCGCCGCTGTCGTCCGCCGG
CGGCGCGTTGGCCCCGGAGGGAGAGAGAGGGCGAGCGGCGGCGGTATCCT
CGGCCTGCGACCGCTACCTGCGGATCCTTTCGAGGGACACCGCGAGGGTG
CGCTCCCGCATGCAGCTCTACCACCAGGAGCTCGCACGCATGCAAGGAGA
AGCCGAGTCTCTGATTTCGCATTCGGCCGCAGTCAATACGAAGAGCTTGC
CGTTGTCGGCGGGACCTGATGCTGAAGGCGGCTGCGAGCAGCCCCCGCGC
GTGTCTCTTGACGCGAGTACCGGCAGCGGTTCCCTGTGCGCGTCCCCCGG
TAGCGCCAGGACGGGAGGAACAAGGAGCAGATGCGGCGAAGGTGGCAGGG
GAATTGCCATCATCCCCGTCGAGGTAGGCGGCAGGACGACAGAGATGGCC
GGGGGTCGTGGCGGCGGCGGAACCGTGAGTGTAATCCCCTCTGACGGACC
GGTCTCGGCGTTCTCGAGAGTCAGCCCCGTGGAGCGAGCAGACCCCAGCC
ACCCTAAGCTGGAAATCAAACGGAGGCCCTGCAGCACGCCCAGGAGAAAG
GAGGCAGGCGCACAACCAGCATCACCGTCGAGCCCCGCCCGTGGTGGCCT
GGGGGGACACCCGGGTCATGACAGCGGTGGTGGTGGGGTCGACGGCGAGC
CTCGGACGCGTGCGGGCGCACACGGGGGGGAAAGTACCGACGACAACGGA
ACCAAGATCGTCAGGAGTGACCGCGTCGCAAAGCTGTTGCTAGCGACGCT
TGCAGGAACGATCGAGAAGCGCTCGCTGTCTCCGGTGCCTCCCTCCCCTG
CGTGTGAAGAAAGGAGAATAGCTGTTGCGCCCAAGGCCGCTTGCTTTGAC
CGTCCGTCCGTCCGGAACGGACTGGCGGGGCTGACCGCGGATGAGGTGGA
CAAGGTGTTGCTAAGGGTGGAGGCGTCTACGCCTGGGGCAGTGTCGTGCT
GGAAGTCTCCGGCGAGTAGTAGAAGAGGACCGCAAACCTGCGGGACGGAG
AGCTTAACCCCGTCTACAGGCGGCTGGGAATTGACGGCGGAGGCGCAGCA
GCGGCATCGACAGAGAGACAGAGCTCGGGGTGATCGCTTTGGCTGGTTCG
ACGCCGAAGGAAGTCCAAGGGTTTGGGGGTCAAGTGGAAAAAGAGGGGAG
GGAATGGAGGGAAGGATCATATCTGGAGCAGAAGGAAGGGGAGGCGGAGG
GGCAAGAAGAGTAAGACAGATGATGAAGATCACCCAGCAACCGCAGCAAA
TGCTGCCGAATCACGGGGACAGTGGCATGTTTCGGGTCCCATCATCAACA
GCTCGAAAACCGATGGACCGAAGAAATACGTGGGGCATCGAGCAAACGCA
ATGGGCTGGCTCAGGCGGAGAAAATCATGACGCCAGTGAAAATTTCATTG
GGAGCAACCCGATGTACACGCACAAGGCGGAGGTTGCCGAGAAGCGCACT
TTTTCCGCTCAAAAGTACCACGCTTCTCCCAAGAAGGCCGGTGTCGCCAA
CTCATCCGCCTCCCGATCATCTACTGTTAGTCAAGGGAGCAGTCATCACG
AAGGCCACTCTTCATCCGCCACCGCGCGTAACACGCGCCGTCCCGTGCGG
GCCTTCGAGCGGTTAGACGAAGACATGTACGACGGCTTCCTACACTGTGC
CAAGAAAAACACCGGCAAGACTAGCAGCAGGGGGTTCAGGAGGGCTTTCG
GAGATGGATGA
back to top