mRNA_Ecto-sp13_S_contig8428.19804.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8428.19804.1
Unique NamemRNA_Ecto-sp13_S_contig8428.19804.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8428.19804.1 vs. uniprot
Match: D7G7A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A0_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 8.550e-5
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = -3 
Query:  284 KGKYSDTAEEPSYRSKTAEPQKEPSKVRRRR 376
            KGKYSDTAEEPSYRSK AEPQKEPSK +R R
Sbjct:   86 KGKYSDTAEEPSYRSKAAEPQKEPSKPKRDR 116
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BLAST of mRNA_Ecto-sp13_S_contig8428.19804.1 vs. uniprot
Match: A0A6H5JZR7_9PHAE (ENTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR7_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 8.640e-5
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = -3 
Query:  284 KGKYSDTAEEPSYRSKTAEPQKEPSKVRRRR 376
            KGKYSDTAEEPSYRSK AEPQKEPSK +R R
Sbjct:  268 KGKYSDTAEEPSYRSKAAEPQKEPSKPKRDR 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8428.19804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7A0_ECTSI8.550e-587.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZR7_9PHAE8.640e-587.10ENTH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8428contigEcto-sp13_S_contig8428:2..379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464112.4106438-CDS-Ecto-sp13_S_contig8428:1..3791681464112.4106438-CDS-Ecto-sp13_S_contig8428:1..379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8428 2..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8428.19804.1prot_Ecto-sp13_S_contig8428.19804.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8428 2..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8428.19804.1

>prot_Ecto-sp13_S_contig8428.19804.1 ID=prot_Ecto-sp13_S_contig8428.19804.1|Name=mRNA_Ecto-sp13_S_contig8428.19804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
ILFLSLRNIPSIDEGQAWLWQLRCTSPVNARNSTVRFTRQKAHAVHPVEG
ARLTPTTLSSSLWKIESVPIPLSQALHSFRSNFITIVSPHLLPPPAACAP
SKVPFVARLSCFCSWAPPPCLSTCPL
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mRNA from alignment at Ecto-sp13_S_contig8428:2..379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8428.19804.1 ID=mRNA_Ecto-sp13_S_contig8428.19804.1|Name=mRNA_Ecto-sp13_S_contig8428.19804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8428:2..379+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCTCTTTCTCTCTCTCCGCAACATCCCAAGCATCGACGAAGGGCAAGC
CTGGCTTTGGCAGCTTCGATGTACCTCTCCTGTCAACGCACGCAATTCAA
CCGTGCGTTTCACTCGGCAGAAGGCGCACGCGGTTCACCCGGTAGAAGGC
GCACGTTTGACACCAACCACTCTTTCATCTAGCCTTTGGAAAATCGAAAG
CGTGCCAATACCCTTGTCTCAGGCGCTTCATTCGTTCCGCAGCAATTTCA
TTACTATAGTCTCGCCGCATTTGCTGCCCCCGCCCGCCGCCTGCGCACCT
TCGAAGGTTCCTTTTGTGGCTCGGCTGTCTTGCTTCTGTAGCTGGGCTCC
TCCGCCGTGTCTGAGTACTTGCCCTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8428:2..379+

>mRNA_Ecto-sp13_S_contig8428.19804.1 ID=mRNA_Ecto-sp13_S_contig8428.19804.1|Name=mRNA_Ecto-sp13_S_contig8428.19804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8428:2..379+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCTCTTTCTCTCTCTCCGCAACATCCCAAGCATCGACGAAGGGCAAGC
CTGGCTTTGGCAGCTTCGATGTACCTCTCCTGTCAACGCACGCAATTCAA
CCGTGCGTTTCACTCGGCAGAAGGCGCACGCGGTTCACCCGGTAGAAGGC
GCACGTTTGACACCAACCACTCTTTCATCTAGCCTTTGGAAAATCGAAAG
CGTGCCAATACCCTTGTCTCAGGCGCTTCATTCGTTCCGCAGCAATTTCA
TTACTATAGTCTCGCCGCATTTGCTGCCCCCGCCCGCCGCCTGCGCACCT
TCGAAGGTTCCTTTTGTGGCTCGGCTGTCTTGCTTCTGTAGCTGGGCTCC
TCCGCCGTGTCTGAGTACTTGCCCTTTG
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