mRNA_Ecto-sp13_S_contig8422.19800.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8422.19800.1
Unique NamemRNA_Ecto-sp13_S_contig8422.19800.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8422.19800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8422contigEcto-sp13_S_contig8422:5504..6103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size600
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464112.1065383-UTR-Ecto-sp13_S_contig8422:5503..56541681464112.1065383-UTR-Ecto-sp13_S_contig8422:5503..5654Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8422 5504..5654 +
1681464112.1274598-UTR-Ecto-sp13_S_contig8422:5990..61031681464112.1274598-UTR-Ecto-sp13_S_contig8422:5990..6103Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8422 5991..6103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464112.1171346-CDS-Ecto-sp13_S_contig8422:5654..59901681464112.1171346-CDS-Ecto-sp13_S_contig8422:5654..5990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8422 5655..5990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8422.19800.1prot_Ecto-sp13_S_contig8422.19800.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8422 5655..5990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8422.19800.1

>prot_Ecto-sp13_S_contig8422.19800.1 ID=prot_Ecto-sp13_S_contig8422.19800.1|Name=mRNA_Ecto-sp13_S_contig8422.19800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MFHSSVFYFEVRCFFHHHLLFQNHCFTPILHTRSGLSPNECGKIRFVSCT
GGLKRGVLCNDGYSSSRRVYEYGPTSQLLFMFYSAMAGVRRYGKGGKKSV
SEGAGLEIHAR*
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mRNA from alignment at Ecto-sp13_S_contig8422:5504..6103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8422.19800.1 ID=mRNA_Ecto-sp13_S_contig8422.19800.1|Name=mRNA_Ecto-sp13_S_contig8422.19800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8422:5504..6103+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCCACCCGCCTACGTAAAATGTCTGTGCGTGCTTGTGTTTTTGCCCT
CAAGCTGGGTGTGTTCGTGCGGGAAAAAAAGATTGAACCGCATCACTTTT
TCCCGGTTGCGTTTCTTTTTGTTGTTCGGGTCGCCTGGGTCATCGTGTCG
AATGTTCCATTCGTCTGTTTTCTACTTCGAAGTACGTTGTTTTTTTCATC
ACCATCTGTTATTTCAAAACCATTGTTTTACCCCCATTCTCCACACCCGC
TCTGGTCTCTCTCCGAACGAGTGTGGTAAAATACGATTCGTGAGTTGCAC
TGGTGGGTTAAAACGCGGTGTTTTGTGCAATGACGGTTACAGCAGCAGCA
GACGAGTGTACGAGTACGGACCTACAAGTCAGCTACTCTTTATGTTTTAC
AGTGCCATGGCAGGCGTTCGGCGGTACGGGAAGGGAGGCAAGAAGAGTGT
TTCAGAGGGGGCGGGGTTAGAAATCCATGCGCGTTGACCACATAGATTGT
TGGGCGCAAAACAAATACCATTAAAGAATGCCCGTCCTTTCCTCAACTCG
CTCTCTACTGTCGGGCTAAAATAAAACTGGGCGCGAGATCGACCCCGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8422:5504..6103+

>mRNA_Ecto-sp13_S_contig8422.19800.1 ID=mRNA_Ecto-sp13_S_contig8422.19800.1|Name=mRNA_Ecto-sp13_S_contig8422.19800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8422:5504..6103+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCATTCGTCTGTTTTCTACTTCGAAGTACGTTGTTTTTTTCATCA
CCATCTGTTATTTCAAAACCATTGTTTTACCCCCATTCTCCACACCCGCT
CTGGTCTCTCTCCGAACGAGTGTGGTAAAATACGATTCGTGAGTTGCACT
GGTGGGTTAAAACGCGGTGTTTTGTGCAATGACGGTTACAGCAGCAGCAG
ACGAGTGTACGAGTACGGACCTACAAGTCAGCTACTCTTTATGTTTTACA
GTGCCATGGCAGGCGTTCGGCGGTACGGGAAGGGAGGCAAGAAGAGTGTT
TCAGAGGGGGCGGGGTTAGAAATCCATGCGCGTTGA
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