mRNA_Ecto-sp13_S_contig8421.19799.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8421.19799.1
Unique NamemRNA_Ecto-sp13_S_contig8421.19799.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8421.19799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8421contigEcto-sp13_S_contig8421:2387..3476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464112.0603564-CDS-Ecto-sp13_S_contig8421:2387..25691681464112.0603564-CDS-Ecto-sp13_S_contig8421:2387..2569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8421 2388..2569 -
1681464112.072115-CDS-Ecto-sp13_S_contig8421:3385..34761681464112.072115-CDS-Ecto-sp13_S_contig8421:3385..3476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8421 3386..3476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8421.19799.1prot_Ecto-sp13_S_contig8421.19799.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8421 2388..3476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8421.19799.1

>prot_Ecto-sp13_S_contig8421.19799.1 ID=prot_Ecto-sp13_S_contig8421.19799.1|Name=mRNA_Ecto-sp13_S_contig8421.19799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
PELVQCPGCTTCLLASLSSEQAPLAAGSSTRFISHNKGDLCGPGEHPVVL
PPGLIPWDDQNSNRGVVQQISSALVQESDTLIPLTWCRNRG
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mRNA from alignment at Ecto-sp13_S_contig8421:2387..3476-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8421.19799.1 ID=mRNA_Ecto-sp13_S_contig8421.19799.1|Name=mRNA_Ecto-sp13_S_contig8421.19799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8421:2387..3476- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGAGCTTGTCCAGTGCCCCGGTTGCACCACGTGCTTGCTGGCTTCCCT
ATCGTCTGAACAGGCCCCTCTGGCTGCTGGTAGTAGCACACGTGAGTCAA
CTTTCGAGTACGGAATCGTGGGACGGTTTGATAGCCATTCGAGCTGCAAG
GCATCACGGCTTCGGCGGATGGATTGATATGACCGCCTCCACGTAGTTCA
TCACTCGTTTGTCGCCGAACTGGTCTTCTTGCGCCAACAGAGAGCGCCGA
GTCGAATAATGAAGCTCGAGGACCTCGCCATTCTAGCACATGTCCTACGT
CTTCGGTGCGTGAGCCAGGCTTGCCGTGCAGTTGGGCACGTAGCAAACAA
TACATGACTGCAGGTTCAAAAATATATCATGCGTAGATTGCGTAGATCTC
TGCGGAACCACCATCCAAGATACTACGTGCCCATTATGTTGCAGTTGAGA
ACGCGGCGTGGTTGATGCCTTCGGGGATCCCGGCACTTGCATATGCTCTA
GGTGGGGTGGCCTGTAATCGAGTGAGTACAGACGGGTATGGATGCTTGCA
GACACAGGTGTTGCTCCCTAGGTTTGACTACTTAAACTGTACAGGGGAAA
CTAATCTGATGGAATCAATAGTCGAGAGGTTAGACCATGCCGCTGGGAAC
TCTCGGGTACTCATATATAGAACTTACACTTACCGGTAGAATATGTTTCA
CACAAGCACTGAAAGACTACTCCTTCGAGAAAATATCATGGTACGTTATT
CTGGCCGGCCTCGCAATAGGGGCGATTCCTAGGTCGCGTATGGTACATAC
GAATTGCCGCAACGTGCTCTGTGTGTGATGCGCGTGACACAAATGGACCT
CTCTCTTGAGATGTCTCTACGCCCTCTCTCCGTGCATGTCCATTGACGCT
CCTCTAGGTTTCATCAGTCACAACAAGGGTGACCTCTGTGGGCCAGGAGA
GCACCCGGTTGTTTTACCGCCAGGGCTGATTCCGTGGGACGACCAGAACA
GCAACCGCGGAGTGGTGCAGCAGATCTCGTCCGCCTTGGTTCAGGAGTCA
GACACGCTGATTCCCCTGACATGGTGCCGGAACAGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8421:2387..3476-

>mRNA_Ecto-sp13_S_contig8421.19799.1 ID=mRNA_Ecto-sp13_S_contig8421.19799.1|Name=mRNA_Ecto-sp13_S_contig8421.19799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8421:2387..3476- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGAGCTTGTCCAGTGCCCCGGTTGCACCACGTGCTTGCTGGCTTCCCT
ATCGTCTGAACAGGCCCCTCTGGCTGCTGGTAGTAGCACACGTTTCATCA
GTCACAACAAGGGTGACCTCTGTGGGCCAGGAGAGCACCCGGTTGTTTTA
CCGCCAGGGCTGATTCCGTGGGACGACCAGAACAGCAACCGCGGAGTGGT
GCAGCAGATCTCGTCCGCCTTGGTTCAGGAGTCAGACACGCTGATTCCCC
TGACATGGTGCCGGAACAGGGGG
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