mRNA_Ecto-sp13_S_contig8421.19798.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8421.19798.1
Unique NamemRNA_Ecto-sp13_S_contig8421.19798.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8421.19798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8421contigEcto-sp13_S_contig8421:1367..2303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size336
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464112.0196707-CDS-Ecto-sp13_S_contig8421:1366..15411681464112.0196707-CDS-Ecto-sp13_S_contig8421:1366..1541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8421 1367..1541 -
1681464112.0301206-CDS-Ecto-sp13_S_contig8421:2142..23031681464112.0301206-CDS-Ecto-sp13_S_contig8421:2142..2303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8421 2143..2303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8421.19798.1prot_Ecto-sp13_S_contig8421.19798.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8421 1367..2303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8421.19798.1

>prot_Ecto-sp13_S_contig8421.19798.1 ID=prot_Ecto-sp13_S_contig8421.19798.1|Name=mRNA_Ecto-sp13_S_contig8421.19798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
KARHPRQQAAVECIAMTLPKDTETAMMMELSGDPRPASASASTPALRTNR
PDSRCHLGQRMAPVLRPLSPNRWQSRNCRRLWRMKWSQGLNTRWWAKETS
NNRRQASPTML*
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mRNA from alignment at Ecto-sp13_S_contig8421:1367..2303-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8421.19798.1 ID=mRNA_Ecto-sp13_S_contig8421.19798.1|Name=mRNA_Ecto-sp13_S_contig8421.19798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=937bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8421:1367..2303- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTCGGCATCCCCGGCAGCAAGCAGCGGTGGAATGCATAGCGATGAC
CCTCCCGAAAGACACGGAAACAGCCATGATGATGGAGCTGTCGGGGGATC
CGCGGCCGGCAAGCGCAAGCGCCAGCACACCGGCCCTGAGGACAAACAGG
CCCGACTCGCGGTGCGTTTGGAGTGTTTTTTTAGGGATTATTCAGTCAAA
GAAAAACTACCCGTTCAATATGCGTTTGAAAAGGTTTTTGTGGGGAATGT
GGGCGTCGATGTAGCTGCGTTGTACTTTAGAGTGGACCTGTACTGCTGCA
CGGACCGAGGGCGAGGTTTCCATTACGCCGCGCAGAGTAATCTATTTGTG
CGACGAGCTGTGAGTTGTATCTGCCTTGCAAGTCGCTGCCTCGATGACCT
ACGATTGGCACGCCTCTTGTCAGCTGTGATGAGCTTTTTGTTGTGGCGTC
CAATGTTTCATCGCTGATTGTTGGTTTGGACGGGCCGCAGTTTGTGGCAT
GGCCACAGCGTACGTAGAAAGACGTCAACGCTGTGCACCCGTTTGTAGAC
CTCATGCGTCTTCAACCCGAACATAACACCCGCGCGAGCACTTGCCACAC
AAGCACGTGGGTCCCTGAAGCTCGAACGAACCTTTCCACTGTTTCCGCTC
ACGGCGCCTGAGCGAACCCAGCCCCCCCGGCGCCCCCCCCGTGCCCTCCA
CCGCCCATCCTATACCCCTCGCCAACACGATGCGTGCTTTCGCGTGTGTC
GCCGCCCACCAGGTGCCACTTAGGGCAGAGGATGGCACCAGTTCTACGAC
CACTTTCCCCCAACCGGTGGCAATCCCGAAACTGTCGTCGTCTGTGGAGG
ATGAAGTGGAGCCAAGGCCTGAACACGAGGTGGTGGGCAAAGGAGACGAG
CAACAATCGGCGGCAAGCAAGTCCCACGATGCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8421:1367..2303-

>mRNA_Ecto-sp13_S_contig8421.19798.1 ID=mRNA_Ecto-sp13_S_contig8421.19798.1|Name=mRNA_Ecto-sp13_S_contig8421.19798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8421:1367..2303- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTCGGCATCCCCGGCAGCAAGCAGCGGTGGAATGCATAGCGATGAC
CCTCCCGAAAGACACGGAAACAGCCATGATGATGGAGCTGTCGGGGGATC
CGCGGCCGGCAAGCGCAAGCGCCAGCACACCGGCCCTGAGGACAAACAGG
CCCGACTCGCGGTGCCACTTAGGGCAGAGGATGGCACCAGTTCTACGACC
ACTTTCCCCCAACCGGTGGCAATCCCGAAACTGTCGTCGTCTGTGGAGGA
TGAAGTGGAGCCAAGGCCTGAACACGAGGTGGTGGGCAAAGGAGACGAGC
AACAATCGGCGGCAAGCAAGTCCCACGATGCTGTAG
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