prot_Ecto-sp13_S_contig84201.19797.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig84201.19797.1
Unique Nameprot_Ecto-sp13_S_contig84201.19797.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length74
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84201.19797.1 vs. uniprot
Match: A0A6H5KGN2_9PHAE (P4Hc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN2_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.860e-42
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 
Query:    1 CASWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRCVRPLACNSNIRIYRY 74
            CA+WIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR  RPLACNSNIRIYRY
Sbjct:   32 CAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR--RPLACNSNIRIYRY 103
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84201.19797.1 vs. uniprot
Match: D7FQ80_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ80_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 3.150e-41
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 
Query:    1 CASWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRCVRPLACNSNIRIYRY 74
            CA+WIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR  RPLACNSNIRIYRY
Sbjct:   68 CAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR--RPLACNSNIRIYRY 139
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84201.19797.1 vs. uniprot
Match: A0A836CHZ3_9STRA (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.970e-20
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 0 
Query:    1 CASWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRCVRPLACNSNIRIYRY 74
            C +WI +GE  GFE +FH  T E+AHRDNGR+ +HS D+AAA++ R+  FVPA +  R  +   CN+NIR+YRY
Sbjct:   18 CGAWIDWGEETGFENTFHTATREIAHRDNGRLQVHSPDIAAAIWQRIQPFVPAELS-RGRKAAGCNANIRLYRY 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84201.19797.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGN2_9PHAE1.860e-4295.95P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FQ80_ECTSI3.150e-4195.95P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CHZ3_9STRA7.970e-2052.70Fe2OG dioxygenase domain-containing protein (Fragm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84201contigEcto-sp13_S_contig84201:3..588 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84201.19797.1mRNA_Ecto-sp13_S_contig84201.19797.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig84201 3..588 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig84201.19797.1 ID=prot_Ecto-sp13_S_contig84201.19797.1|Name=mRNA_Ecto-sp13_S_contig84201.19797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
CASWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKF
VPANMGGRCVRPLACNSNIRIYRY
back to top