mRNA_Ecto-sp13_S_contig12390.1979.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12390.1979.1
Unique NamemRNA_Ecto-sp13_S_contig12390.1979.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: A0A6H5KYH0_9PHAE (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH0_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 5.490e-61
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTILNAGKAPAAI 312
            GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTILNAGKAPAAI
Sbjct:  276 GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTILNAGKAPAAI 379          
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: D7FVU6_ECTSI (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU6_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.950e-57
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 1
Query:    1 GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTILNAGKAPAAI 312
            GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRN+KSKDMFVSKYW IL AG+APAAI
Sbjct:  394 GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNMKSKDMFVSKYWAILKAGRAPAAI 497          
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: UPI001F0414CD (ferroptosis suppressor protein 1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0414CD)

HSP 1 Score: 83.6 bits (205), Expect = 9.510e-17
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTIL 285
            G   VFA+GDC +    K AY+AG   D V+  +    A KPLK    S  P  +VPVG  GGV  LP G+V+G+F++RNIKS+D+FVSK W +L
Sbjct:  280 GFENVFALGDCCNSKEIKEAYVAGLHADLVSNNIRCLLANKPLKKYKMST-PAIIVPVGSDGGVGVLPNGVVIGNFLSRNIKSRDLFVSKTWKLL 373          
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: A0A6P8HVF7_ACTTE (apoptosis-inducing factor 2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HVF7_ACTTE)

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-13
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   13 VFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTILN 288
            VFAVGDC +    K+AY+AG +G+ VA  +      K LK    S  P+ +VP+G   GVS LP G V+G F+T+ +K K++F +KYW ++N
Sbjct:  284 VFAVGDCNNTDEMKLAYVAGVQGELVAFNIKQLNENKKLKEHKLS-RPMMVVPIGXNNGVSQLPNGSVMGSFVTKTLKGKNLFTAKYWKLMN 374          
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: UPI000A2A61F0 (apoptosis-inducing factor 2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A61F0)

HSP 1 Score: 73.9 bits (180), Expect = 2.880e-13
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   10 KVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKS-AAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTILN 288
            +VFA+GDC +    K+AY AGA G+ VA  +     GK LK    P+   + +VP+G+ GG + LP G V+G  +T++IK K +F S+YW ++N
Sbjct:  283 EVFAIGDCSNTDELKLAYAAGAHGELVAFNIKQLNEGKKLKEYKLPNX--IMVVPIGRNGGAAQLPNGAVMGSLLTKSIKGKGLFASRYWKLMN 374          
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: A0A220WA56_9SPHN (NADH dehydrogenase n=1 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220WA56_9SPHN)

HSP 1 Score: 72.4 bits (176), Expect = 9.070e-13
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTILNAGK 297
            G+  ++A+GDC ++P  K+ YLA  +  ++AK + A+A GKP +   P+ M ++LVPVG+  GV  LP  +    FM  N+K KDMF+SK +  L A K
Sbjct:  252 GTENLYALGDCANVPEGKLGYLADQQAAALAKNIIATAKGKPTRDYKPNPM-MALVPVGRKQGVVQLPFAVTTLGFMV-NMKQKDMFISKTYKQLGASK 348          
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: A0A6G0X2P0_9STRA (Pyr_redox_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2P0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.960e-12
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   10 KVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVS---LVPVGKTGGVSSLPM--GIVVGDFMTRNIKSKDMFVSKYWTI 282
             V+ VGD  D P PK++YL   +   VAK++A           AP + P +   L+P+G  GGVS LP+  G+VVGDF+T N+KSKD F +KY+++
Sbjct:  284 NVYCVGDASDHPTPKLSYLGRVQALHVAKELAKVIRNGGHGDVAPFIPPSTDAMLIPLGPHGGVSQLPVLGGLVVGDFITSNVKSKDYFAAKYFSV 379          
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: A0A0H5R7S5_9EUKA (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7S5_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 8.900e-11
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTIL 285
            G+ KVFA+GDC ++   K+AY AG +   VA+ + A    + LK  +PS     +VP G + G +S+  G  +G F+T+N+KSK +F SKY  +L
Sbjct:  270 GNPKVFAIGDCTNILEDKLAYCAGNQSTVVAQNIKALYYKQQLKKYSPSGFSTMIVPTGPSDG-ASIVFGFTLGGFLTKNLKSKHLFCSKYAQLL 363          
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: UPI0003F09665 (apoptosis-inducing factor 2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F09665)

HSP 1 Score: 63.2 bits (152), Expect = 1.380e-10
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYW 276
            G   V+A+GDC ++   K+AY AG   D +   +   +  K      P    + L+ +G+ GGV  LP G + G F TR++KSKD+FV KYW
Sbjct:   21 GCENVYAIGDCNNVDETKMAYRAGQHADLLLDNLVKESEEKEKTPYKPGGT-MMLLSIGREGGVFHLPNGFIFGSFPTRHLKSKDVFVGKYW 111          
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Match: G4ZDK3_PHYSP (Pyr_redox_2 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZDK3_PHYSP)

HSP 1 Score: 65.9 bits (159), Expect = 2.280e-10
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   13 VFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSVMP---VSLVPVGKTGGVSSLPM--GIVVGDFMTRNIKSKDMFVSKYWTILNA 291
            +FA+GD  +   PK+A++AG +G  +A ++ A+   K L    P   P     ++P+G +GGVS LP   G+VVGD+ TR IKSKD   S  W+ L A
Sbjct:  303 MFAIGDVCNHASPKMAFIAGEQGKFLANELVAAIRKKQLGFTKPFKAPGTAAMILPLGPSGGVSQLPFWGGVVVGDWFTRMIKSKDYLASMIWSSLGA 400          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12390.1979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYH0_9PHAE5.490e-61100.00Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
D7FVU6_ECTSI2.950e-5796.15Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
UPI001F0414CD9.510e-1748.42ferroptosis suppressor protein 1-like n=1 Tax=Xeni... [more]
A0A6P8HVF7_ACTTE1.100e-1343.48apoptosis-inducing factor 2-like n=1 Tax=Actinia t... [more]
UPI000A2A61F02.880e-1341.49apoptosis-inducing factor 2 n=1 Tax=Exaiptasia dia... [more]
A0A220WA56_9SPHN9.070e-1341.41NADH dehydrogenase n=1 Tax=Sphingorhabdus sp. SMR4... [more]
A0A6G0X2P0_9STRA3.960e-1242.71Pyr_redox_2 domain-containing protein n=1 Tax=Apha... [more]
A0A0H5R7S5_9EUKA8.900e-1140.00Pyr_redox_2 domain-containing protein (Fragment) n... [more]
UPI0003F096651.380e-1038.04apoptosis-inducing factor 2-like n=1 Tax=Saccoglos... [more]
G4ZDK3_PHYSP2.280e-1040.82Pyr_redox_2 domain-containing protein n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12390contigEcto-sp13_S_contig12390:9..323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score195.3
Seed ortholog evalue1.4e-47
Seed eggNOG ortholog2880.D7FVU6
Model size315
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Oxidoreductase
EggNOG OGsCOG1252@1,KOG2495@2759
Cds size315
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462658.9697132-CDS-Ecto-sp13_S_contig12390:8..3231681462658.9697132-CDS-Ecto-sp13_S_contig12390:8..323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12390 9..323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12390.1979.1prot_Ecto-sp13_S_contig12390.1979.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12390 9..323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12390.1979.1

>prot_Ecto-sp13_S_contig12390.1979.1 ID=prot_Ecto-sp13_S_contig12390.1979.1|Name=mRNA_Ecto-sp13_S_contig12390.1979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
GSGKVFAVGDCMDLPVPKIAYLAGAEGDSVAKQVAASAAGKPLKSAAPSV
MPVSLVPVGKTGGVSSLPMGIVVGDFMTRNIKSKDMFVSKYWTILNAGKA
PAAI*
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mRNA from alignment at Ecto-sp13_S_contig12390:9..323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12390.1979.1 ID=mRNA_Ecto-sp13_S_contig12390.1979.1|Name=mRNA_Ecto-sp13_S_contig12390.1979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12390:9..323+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCGGGAAAGGTCTTCGCCGTAGGAGACTGCATGGATCTACCGGTCCC CAAGATCGCCTACCTCGCCGGCGCAGAGGGTGACAGCGTGGCCAAGCAGG TGGCCGCCAGCGCGGCCGGAAAGCCCCTCAAGAGCGCCGCGCCGTCGGTG ATGCCGGTGTCCCTGGTCCCCGTGGGAAAGACCGGAGGCGTTTCGTCCCT GCCGATGGGGATCGTCGTCGGGGACTTCATGACGCGAAACATCAAGTCCA AGGACATGTTCGTGTCCAAGTATTGGACCATTCTCAATGCCGGGAAGGCT CCGGCCGCTATCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12390:9..323+

>mRNA_Ecto-sp13_S_contig12390.1979.1 ID=mRNA_Ecto-sp13_S_contig12390.1979.1|Name=mRNA_Ecto-sp13_S_contig12390.1979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12390:9..323+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCGGGAAAGGTCTTCGCCGTAGGAGACTGCATGGATCTACCGGTCCC
CAAGATCGCCTACCTCGCCGGCGCAGAGGGTGACAGCGTGGCCAAGCAGG
TGGCCGCCAGCGCGGCCGGAAAGCCCCTCAAGAGCGCCGCGCCGTCGGTG
ATGCCGGTGTCCCTGGTCCCCGTGGGAAAGACCGGAGGCGTTTCGTCCCT
GCCGATGGGGATCGTCGTCGGGGACTTCATGACGCGAAACATCAAGTCCA
AGGACATGTTCGTGTCCAAGTATTGGACCATTCTCAATGCCGGGAAGGCT
CCGGCCGCTATCTGA
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