mRNA_Ecto-sp13_S_contig841.19786.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig841.19786.1
Unique NamemRNA_Ecto-sp13_S_contig841.19786.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig841.19786.1 vs. uniprot
Match: D8LGU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.320e-21
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 2 
Query:   38 VGRSYGRVIMYCSNFERTTADAQFFESLLCLARLVVDAAVAESSLSPE 181
            VGRSYGRVIMYCSNFERTTADA FFESLLCLARLVV AAVAES+LSPE
Sbjct:   24 VGRSYGRVIMYCSNFERTTADALFFESLLCLARLVVAAAVAESTLSPE 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig841.19786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGU1_ECTSI2.320e-2193.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig841contigEcto-sp13_S_contig841:13111..14458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001200.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464111.1492574-CDS-Ecto-sp13_S_contig841:13110..132411681464111.1492574-CDS-Ecto-sp13_S_contig841:13110..13241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig841 13111..13241 -
1681464111.163741-CDS-Ecto-sp13_S_contig841:13832..139761681464111.163741-CDS-Ecto-sp13_S_contig841:13832..13976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig841 13833..13976 -
1681464111.183149-CDS-Ecto-sp13_S_contig841:14421..144581681464111.183149-CDS-Ecto-sp13_S_contig841:14421..14458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig841 14422..14458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig841.19786.1prot_Ecto-sp13_S_contig841.19786.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig841 13111..14458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig841.19786.1

>prot_Ecto-sp13_S_contig841.19786.1 ID=prot_Ecto-sp13_S_contig841.19786.1|Name=mRNA_Ecto-sp13_S_contig841.19786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
VRRSRTSETAAGGRAELRACDHVLQQLRADDGGRAILRVPAVPREAGGGC
RGGGVLAVPGGRQGVRPDLPGRRVSPLPFPPDPSTPNVHSPFFPIEARDP
GDPA
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mRNA from alignment at Ecto-sp13_S_contig841:13111..14458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig841.19786.1 ID=mRNA_Ecto-sp13_S_contig841.19786.1|Name=mRNA_Ecto-sp13_S_contig841.19786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig841:13111..14458- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGAAGGTCGAGAACGAGCGAAACTGCTGCGGGAGGTGCGGCTAGCAA
GTGGCGGCCCGGCCGTACACACGTTCCTTTTTTTCCCTGCTCATTATGTC
GGCTAATATTCCATTTTCACCCGTATCCTCCTGGAACTGCGTCACCAATA
CGTTGTCTACAGTTATTTTCAAACAGGACGCACCGGAACGCGTTTTCATA
GACGGGCCCCGTCCCAAGTCTTACCGTTGCCGCAAAAAAAAATTCCCTCT
AGAGAGCAGCCCAAACTCATTAAACCAGGTGTTTATATTGTGTAGTACGT
GACCATATTTCACGCGTCGCGGTTGTGGACTACCCCGCGGCGGGCAATAC
GCCGCCGCCGCGATCAGGAAAAAGAAAAGCGTGCCCTAGAGAGAGCAGCC
CAAACGCAGCAGACTAGGTTTTTGTTGCAGCACGTGACCCTCTTCGATGC
GTCGTGGTTGTGGACTGCCCTGCCGCGGTCAGGTCGGGCGGAGCTACGGG
CGTGTGATCATGTACTGCAGCAACTTCGAGCGGACGACGGCGGACGCGCA
ATTCTTCGAGTCCCTGCTGTGCCTCGCGAGGCTGGTGGTGGATGCCGCGG
TGGCGGAGTCCTCGCTGTCCCCGGAGGTGGGCGATACAGCATGTGAATGC
ACAGACCTTTTCCAACATCCGATAAAGAACGGCAGATCGTTGCGTCTGGA
AGCATAAGGATCACTCACAAAAGCCTACAGCAGAGTAAAAGTACCTGGAG
AAACAGGTGAAAATAGAAATACTCTTCCATCTAGATGCCTAAGCCTCCTC
ACTCATCAAAGCCGCCCTCATCAGCGAGGCGAACGCCGACAACACATCGA
TCATTCTGCTCACTGGTTCTATCCTTCTCCATGCTCTTTGTGGGATACCT
GTGGGTCCACATCGCCGCCCAAGCCACGGGCAATACTAGACACCACAATG
TACCCCTGTCTTGAACACGACCACCGACCCGAATCATGAAAAGGGCAAAC
TGCTGATGCACCCACCAGATATCTAGCAAATAATGAAGCGTTTCCCGCCG
CGCCTCAAAAGGTACCCGTGCTTCTCTCCACGCGCCAAATAGCACGGGAT
GATTTACGGTCCGTTCCAGACTCTTCACCTTCCCCCCGCCCCCGAACTCT
CAATAATGTATAGAGTGTCGACACGACCCATCCCCCTTCGCAAACCGTGC
CTCCGCATCGTCAAAAGGTAGACAAGGAGTTCGACCGGATCTTCCGGGGA
GGCGTGTTTCACCCCTCCCCTTCCCGCCCGACCCCTCGACCCCGAACGTG
CACTCGCCATTCTTCCCCATCGAGGCAAGGGACCCCGGCGACCCCGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig841:13111..14458-

>mRNA_Ecto-sp13_S_contig841.19786.1 ID=mRNA_Ecto-sp13_S_contig841.19786.1|Name=mRNA_Ecto-sp13_S_contig841.19786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig841:13111..14458- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGAAGGTCGAGAACGAGCGAAACTGCTGCGGGAGGTCGGGCGGAGCT
ACGGGCGTGTGATCATGTACTGCAGCAACTTCGAGCGGACGACGGCGGAC
GCGCAATTCTTCGAGTCCCTGCTGTGCCTCGCGAGGCTGGTGGTGGATGC
CGCGGTGGCGGAGTCCTCGCTGTCCCCGGAGGTAGACAAGGAGTTCGACC
GGATCTTCCGGGGAGGCGTGTTTCACCCCTCCCCTTCCCGCCCGACCCCT
CGACCCCGAACGTGCACTCGCCATTCTTCCCCATCGAGGCAAGGGACCCC
GGCGACCCCGCA
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