mRNA_Ecto-sp13_S_contig840.19776.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig840.19776.1
Unique NamemRNA_Ecto-sp13_S_contig840.19776.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig840.19776.1 vs. uniprot
Match: D8LPQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ1_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 1.760e-97
Identity = 161/182 (88.46%), Postives = 168/182 (92.31%), Query Frame = 1 
Query:    1 MARKELPQALTLEKFAAGKDGRSNAFKKKKQAKKRKLFEKAQLKRQYAKLLKKEAATARGEQGPEAPQPDGAAGVGNEKHADGLVLTPNRKRKEEAGGGELKRRRELSDDRESGERQHVAEGRKEEQRKPGKWRRPEHRPDPFKAAK-VKGVTTRRSFGGSLKTDVQHGALLVGLVQHITGV 543
            MARKELPQALTLEKFAAGKDGR+NAFKKKKQAKKRKLFEKAQLKRQYAKLLKKEA TARGE GP+AP+ DGAAGVG EK A  LVLTPNRK KEEA GGELKRRRELSDDR+SGERQ VAEGRK+EQRKPGKWRRPEHRPDPFKAAK ++GVTTRRSFGGS KTDVQH ALLVGLVQHIT V
Sbjct:    1 MARKELPQALTLEKFAAGKDGRANAFKKKKQAKKRKLFEKAQLKRQYAKLLKKEAVTARGEHGPDAPRSDGAAGVGKEKRAGRLVLTPNRKWKEEASGGELKRRRELSDDRQSGERQQVAEGRKQEQRKPGKWRRPEHRPDPFKAAKALQGVTTRRSFGGSPKTDVQHSALLVGLVQHITAV 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig840.19776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPQ1_ECTSI1.760e-9788.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig840contigEcto-sp13_S_contig840:18230..19333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002030.1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464110.4625545-CDS-Ecto-sp13_S_contig840:18229..183271681464110.4625545-CDS-Ecto-sp13_S_contig840:18229..18327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig840 18230..18327 -
1681464110.4746647-CDS-Ecto-sp13_S_contig840:18501..188551681464110.4746647-CDS-Ecto-sp13_S_contig840:18501..18855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig840 18502..18855 -
1681464110.4919508-CDS-Ecto-sp13_S_contig840:19239..193331681464110.4919508-CDS-Ecto-sp13_S_contig840:19239..19333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig840 19240..19333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig840.19776.1prot_Ecto-sp13_S_contig840.19776.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig840 18230..19333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig840.19776.1

>prot_Ecto-sp13_S_contig840.19776.1 ID=prot_Ecto-sp13_S_contig840.19776.1|Name=mRNA_Ecto-sp13_S_contig840.19776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MARKELPQALTLEKFAAGKDGRSNAFKKKKQAKKRKLFEKAQLKRQYAKL
LKKEAATARGEQGPEAPQPDGAAGVGNEKHADGLVLTPNRKRKEEAGGGE
LKRRRELSDDRESGERQHVAEGRKEEQRKPGKWRRPEHRPDPFKAAKVKG
VTTRRSFGGSLKTDVQHGALLVGLVQHITGV*
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mRNA from alignment at Ecto-sp13_S_contig840:18230..19333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig840.19776.1 ID=mRNA_Ecto-sp13_S_contig840.19776.1|Name=mRNA_Ecto-sp13_S_contig840.19776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1104bp|location=Sequence derived from alignment at Ecto-sp13_S_contig840:18230..19333- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCGGAAAGAGCTGCCGCAAGCGCTTACCCTAGAGAAGTTTGCCGC
TGGCAAAGACGGTCGTTCTAATGCCTTCAAGAAAAAGAAACAAGGTGAGA
CAGAAAGCGAGGGATGCATGTCCAACTACGGTAGATTCCACTTAGAAGTC
GCCAATACATACGGAGGCTTTGTCATATCTCACAAAAACATCTCACATCT
CACTTCAAAGAGAGTATTGGTCTTTGCTTCAATGGCATATTATTTTAACA
ATCCAAGGCAGTTGGGCGTTGTTGTGGCCGATAATACCGGCAGTGGCACA
GGATTGCGTACACATTGACATGTGGATTTACATGTACCACTCTCGTTGGT
TCGCCTGATATTCTCTTGTACAGCAGGAAATACCGCCGTCACGTGTGTCG
CATTGCAGTGCAAGCAGTAAGCCGTAGCATTGTTCCGACCAAGAGGAGCG
CTTTCTCTTGGCCCCCTTGTTACTGCAGCCAAGAAGCGCAAACTGTTCGA
GAAGGCCCAGCTCAAACGACAGTACGCCAAGCTCTTGAAAAAGGAAGCAG
CCACGGCAAGAGGTGAACAGGGGCCTGAGGCTCCGCAACCCGATGGTGCG
GCTGGCGTCGGGAATGAAAAACATGCAGACGGTTTGGTCCTTACACCCAA
CCGCAAGAGGAAAGAAGAGGCAGGCGGAGGAGAACTGAAGCGAAGGCGGG
AACTTTCGGATGATCGCGAGAGCGGAGAGCGACAGCACGTGGCAGAGGGG
CGGAAGGAGGAGCAACGCAAGCCGGGAAAGTGGAGGAGACCAGAGCACCG
ACCAGACCCCTTCAAAGCCGCTAAGGTGAAGGGTCATTATGAACGTCATC
CGATCGTATGTCACGAAGTTGGAAAATACTACTCTTCACGTATGTAGCCC
CCCCCCACCAAATCTCCCCCAAATCTCCCCCAAATGTGGAGGTGAGCTTG
GCCTCAACCCTCGGGGGCACGATCTCGTGTGCTCTCATTTTTTTGGGCAC
TCCAAGGCGTCACGACAAGGAGATCGTTTGGGGGCTCACTCAAGACTGAC
GTTCAGCACGGTGCTCTACTCGTGGGCCTTGTGCAGCACATCACAGGTGT
CTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig840:18230..19333-

>mRNA_Ecto-sp13_S_contig840.19776.1 ID=mRNA_Ecto-sp13_S_contig840.19776.1|Name=mRNA_Ecto-sp13_S_contig840.19776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig840:18230..19333- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCGGAAAGAGCTGCCGCAAGCGCTTACCCTAGAGAAGTTTGCCGC
TGGCAAAGACGGTCGTTCTAATGCCTTCAAGAAAAAGAAACAAGCCAAGA
AGCGCAAACTGTTCGAGAAGGCCCAGCTCAAACGACAGTACGCCAAGCTC
TTGAAAAAGGAAGCAGCCACGGCAAGAGGTGAACAGGGGCCTGAGGCTCC
GCAACCCGATGGTGCGGCTGGCGTCGGGAATGAAAAACATGCAGACGGTT
TGGTCCTTACACCCAACCGCAAGAGGAAAGAAGAGGCAGGCGGAGGAGAA
CTGAAGCGAAGGCGGGAACTTTCGGATGATCGCGAGAGCGGAGAGCGACA
GCACGTGGCAGAGGGGCGGAAGGAGGAGCAACGCAAGCCGGGAAAGTGGA
GGAGACCAGAGCACCGACCAGACCCCTTCAAAGCCGCTAAGGTGAAGGGC
GTCACGACAAGGAGATCGTTTGGGGGCTCACTCAAGACTGACGTTCAGCA
CGGTGCTCTACTCGTGGGCCTTGTGCAGCACATCACAGGTGTCTGA
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