mRNA_Ecto-sp13_S_contig83953.19768.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83953.19768.1
Unique NamemRNA_Ecto-sp13_S_contig83953.19768.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: D7FW87_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW87_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 3.020e-42
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:   13 GRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
            GRYTHDAR FVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL
Sbjct:  202 GRYTHDARRFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 281
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: A0A7S4D4Q2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Q2_HETAK)

HSP 1 Score: 110 bits (274), Expect = 3.450e-26
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:   13 GRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
             RY  +A       E+AQD+L+  Q A+F  NE +DRFKLQMNWNQEELEQWALAAKQK+EDNLALQKY RAD+ KIKDL
Sbjct:   86 ARYVQEANRLARAIEDAQDRLSAAQGAVFRGNERLDRFKLQMNWNQEELEQWALAAKQKDEDNLALQKYTRADEAKIKDL 165
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: F0YAT9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAT9_AURAN)

HSP 1 Score: 108 bits (271), Expect = 8.750e-26
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:   13 GRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
            GRY  + R   VE EE    LN +QN +F ANE+MD+FKLQMNWNQEELEQWALAAKQKEEDNLA+Q+Y RAD+VKI  L
Sbjct:   95 GRYRQELRREQVEVEEHDSMLNALQNQVFQANEKMDQFKLQMNWNQEELEQWALAAKQKEEDNLAIQRYTRADEVKINAL 174
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: A0A7S0NSA6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NSA6_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 1.420e-25
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:   13 GRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
            GR+  + +    E  E  DK+ G+Q AIF  NEEMD+FKLQMNWNQEELEQWALAA+QKEEDNLAL KY +AD+ K+KDL
Sbjct:   95 GRFASELKKHQQEIAELTDKVAGLQTAIFKGNEEMDQFKLQMNWNQEELEQWALAARQKEEDNLALLKYTKADEAKMKDL 174
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: A0A7S2B6P8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B6P8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.710e-25
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:   13 GRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
            GRY  +       +E+  DKLN  QN IF  NE+MD+FKL+MNWNQEELEQWALAAKQKE+DNLALQ+Y RAD+VKIK+L
Sbjct:    8 GRYQQELGRLQEASEQTDDKLNMAQNNIFRGNEKMDQFKLEMNWNQEELEQWALAAKQKEDDNLALQRYTRADEVKIKEL 87
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: A0A7S3J7W5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J7W5_9SPIT)

HSP 1 Score: 100 bits (250), Expect = 8.520e-25
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 EFLLGRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
            E   GR  ++         + QD+LN +QN IF ANE+MD+FKL+MNWNQEELEQWALA +QKEEDNL L+KY RAD+ KIK+L
Sbjct:  106 ERQAGRLKNELTKLEQRIADQQDRLNNIQNMIFKANEKMDQFKLEMNWNQEELEQWALATRQKEEDNLTLEKYRRADEAKIKEL 189
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: A0A7S2NH67_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NH67_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 1.050e-24
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:   13 GRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
            GR+  + +    E  E  DK+NGVQ+A+F  NE MD+FKLQMNWNQEELEQWALAA+QKEEDNLAL KY +AD+ K+KDL
Sbjct:   89 GRFQAEYKKLQTEIGELHDKVNGVQSAVFKGNERMDQFKLQMNWNQEELEQWALAARQKEEDNLALLKYTKADEAKMKDL 168
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: A0A0M0LP32_9EUKA (Flagella associated protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LP32_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 1.440e-24
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:   13 GRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
            GR+  + +    E  E  DK+NGVQ A+F  NE+MD+FKLQMNWNQEELEQWALAA+QKEEDNLAL KY++AD+ K+KDL
Sbjct:   90 GRFQAEYKKLQAELAELHDKVNGVQVAVFKGNEKMDQFKLQMNWNQEELEQWALAARQKEEDNLALLKYSKADEAKMKDL 169
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: G0QYF6_ICHMG (Uncharacterized protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QYF6_ICHMG)

HSP 1 Score: 103 bits (257), Expect = 6.840e-24
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 EFLLGRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
            E  +GR   + +       E Q+KLN VQN IF  NE+MD+FKL+MNWNQEELEQWALAA+QKEEDNL L+KY RAD+VKIK+L
Sbjct:  134 ERQIGRIQSELKILEKRTIEQQEKLNDVQNQIFRGNEKMDQFKLEMNWNQEELEQWALAARQKEEDNLTLEKYKRADEVKIKEL 217
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BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Match: A0A3R7AD39_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7AD39_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.870e-24
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:   13 GRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQEELEQWALAAKQKEEDNLALQKYARADDVKIKDL 252
            GR   + +   VE  E ++KLN +QN +F  NE+MD FK+QMNWNQ+E+EQWA+AAKQKE+DNLAL+KY RADD +IK+L
Sbjct:  143 GRVKQELKRLEVEYNEVENKLNAIQNFLFKGNEDMDNFKMQMNWNQDEMEQWAMAAKQKEDDNLALEKYTRADDSRIKEL 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83953.19768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW87_ECTSI3.020e-4298.75Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S4D4Q2_HETAK3.450e-2667.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YAT9_AURAN8.750e-2668.75Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0NSA6_9EUKA1.420e-2565.00Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S2B6P8_9STRA7.710e-2566.25Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3J7W5_9SPIT8.520e-2559.52Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A7S2NH67_9EUKA1.050e-2465.00Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0M0LP32_9EUKA1.440e-2465.00Flagella associated protein n=1 Tax=Chrysochromuli... [more]
G0QYF6_ICHMG6.840e-2463.10Uncharacterized protein n=1 Tax=Ichthyophthirius m... [more]
A0A3R7AD39_9STRA6.870e-2460.00Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83953contigEcto-sp13_S_contig83953:160..417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score157.9
Seed ortholog evalue2.1e-36
Seed eggNOG ortholog2880.D7FW87
Preferred nameCCDC39
Model size258
KEGG koko:K13675
KEGG ReactionR09316
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0001889,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003341,GO:0003351,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030323,GO:0030324,GO:0031016,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0035469,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048732,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051674,GO:0055123,GO:0060271,GO:0060285,GO:0060287,GO:0060429,GO:0060541,GO:0060562,GO:0060632,GO:0061008,GO:0061371,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0071907,GO:0071910,GO:0072359,GO:0097014,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
EggNOG free text desc.inner dynein arm assembly
EggNOG OGs2C32D@1,2QS0D@2759
Cds size258
COG Functional cat.S
CAZyGT31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464109.5863104-CDS-Ecto-sp13_S_contig83953:159..4171681464109.5863104-CDS-Ecto-sp13_S_contig83953:159..417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83953 160..417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83953.19768.1prot_Ecto-sp13_S_contig83953.19768.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83953 160..417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83953.19768.1

>prot_Ecto-sp13_S_contig83953.19768.1 ID=prot_Ecto-sp13_S_contig83953.19768.1|Name=mRNA_Ecto-sp13_S_contig83953.19768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
EFLLGRYTHDARHFVVEAEEAQDKLNGVQNAIFGANEEMDRFKLQMNWNQ
EELEQWALAAKQKEEDNLALQKYARADDVKIKDLR*
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mRNA from alignment at Ecto-sp13_S_contig83953:160..417-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83953.19768.1 ID=mRNA_Ecto-sp13_S_contig83953.19768.1|Name=mRNA_Ecto-sp13_S_contig83953.19768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83953:160..417- (Ectocarpus species13 EcNAP12_S_4_19m)
GAATTCCTCTTGGGTAGGTATACTCATGATGCCCGTCATTTCGTCGTGGA
GGCTGAAGAGGCCCAAGACAAGCTCAACGGTGTTCAGAATGCCATTTTTG
GCGCGAACGAGGAAATGGACAGGTTCAAGCTGCAGATGAACTGGAACCAG
GAGGAGCTGGAGCAGTGGGCCCTTGCGGCGAAGCAAAAGGAGGAAGATAA
CCTCGCTCTTCAAAAGTACGCTCGAGCGGACGATGTGAAAATCAAGGATC
TCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83953:160..417-

>mRNA_Ecto-sp13_S_contig83953.19768.1 ID=mRNA_Ecto-sp13_S_contig83953.19768.1|Name=mRNA_Ecto-sp13_S_contig83953.19768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83953:160..417- (Ectocarpus species13 EcNAP12_S_4_19m)
GAATTCCTCTTGGGTAGGTATACTCATGATGCCCGTCATTTCGTCGTGGA
GGCTGAAGAGGCCCAAGACAAGCTCAACGGTGTTCAGAATGCCATTTTTG
GCGCGAACGAGGAAATGGACAGGTTCAAGCTGCAGATGAACTGGAACCAG
GAGGAGCTGGAGCAGTGGGCCCTTGCGGCGAAGCAAAAGGAGGAAGATAA
CCTCGCTCTTCAAAAGTACGCTCGAGCGGACGATGTGAAAATCAAGGATC
TCAGGTAA
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