mRNA_Ecto-sp13_S_contig8390.19762.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8390.19762.1 vs. uniprot
Match: UPI0000161E58 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E58) HSP 1 Score: 342 bits (876), Expect = 2.290e-95 Identity = 385/696 (55.32%), Postives = 435/696 (62.50%), Query Frame = 2
Query: 602 VPGQGGGRSNTPR----AFDVKETTGRLMKKGGPLYHSPWLSSKNDVNKAAVPVSFFYPLVPEVVARRQETCTWAFPVREKIKVVCHTTRKTETARKQYNRGLAFAQLRAGGIGTAPRGDRLAALAQLNKEHGLALTLEQWGQCSDRAAAIREENGVLQNQPDLCWEETGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGTSRXXXXXXXXXXXXXXSSGXXGEGXXXXXXXXXXXXXVTHPLMKKGMSHCYGTYPRERCDIANPDFPVQSFVPTTTELLEAASG--HYSWPSNILNLAGVFPSWDAGRTVLRHFNHGTRVAVMRDGTVNTAGRDDMYDELRKTKGMNGMTLEKYLPLHKDAVKIVDNQKAA------ASARKRKGAPXXXXXXXXXXRGALERSRDDGESDGKRACGRAGAGEGGGVGDRGGGXXXXXXXXAAAXXXXXXXXXXXXLGR----GASRTLDTLMRPGMPLHPGLFLTKPRQIIDR-DCPVAFFAPSTTKLLEDVRGTYACPPEVVNRLAFEKRAKKVVKYFNLGKMVAVMRNGEVWSVEPEVMQIQLEKTRGTTGMTTKQFWPLLKEAVRLKDEIDAA-AAAVAERKRKRAPTDDGVDVIKKKTAQV 2635
VPG+GGG NTPR AFDV TT LM+ G PL W K DV + VS Y L PEVVARR ETCTW FP + VC + T +R++Y G+AFAQ++ GGIG AP GDR AL LN+ HGL+LTL QW QC D A RE+ G L P L WE T G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX XX XXXXXX H YP IANPDFPV+SF P+TT+LLE A YS PSNI NL GV S DAG V+RHFNHG RVA MRDGTV R+DMY ELR TKGM GMT E+YLP DAVK VD+++AA SARKRKGAP XXXXX ACG XXXXXXXX GA+ TLDTLM PGMPL+ F +K ++ D DC V + PSTT+L E VRGT+A PP+VVN + + +++V ++NLG+MVA M +V V EVMQ +L+KT GTT M+T+Q+ PLL+EAVRLKD D A AAA AERKRK A T DV++KKTA+
Sbjct: 61 VPGEGGGGRNTPRSSVPAFDVDTTTKMLMQSGMPLSAEAWQRIKYDVVNKELSVSHIYTLNPEVVARRYETCTWTFPDGQ----VCGSKASTAKSRQKYELGVAFAQMKLGGIGMAPTGDRQEALDALNETHGLSLTLPQWDQCVDEAVGCREDGGSLTELPTLHWEMTDGGGAGGRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFVASLITQH-------------YPTASVPIANPDFPVESFEPSTTQLLEQAQAGERYSCPSNIRNLTGVLSSGDAGLRVVRHFNHGKRVAKMRDGTVQMVCREDMYGELRNTKGMRGMTPEQYLPHLYDAVKSVDDRRAADAAAPARSARKRKGAPVACGGXXXXXXXXX-------------ACGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDKETTVPAAGAAAGEERGGATPTLDTLMAPGMPLNLDNFPSKKWKLTDAGDCRV-IYTPSTTELFERVRGTHAFPPDVVNGMELDGDSQEVSTHYNLGRMVARMGR-KVKRVAREVMQAKLKKTPGTTDMSTEQYCPLLEEAVRLKDLTDEAYAAAAAERKRKGASTGGEADVMRKKTARA 724
BLAST of mRNA_Ecto-sp13_S_contig8390.19762.1 vs. uniprot
Match: D8LPI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI9_ECTSI) HSP 1 Score: 332 bits (851), Expect = 1.120e-94 Identity = 451/982 (45.93%), Postives = 509/982 (51.83%), Query Frame = 2
Query: 911 LRAGGIGTAPRGDRLAALAQLNKEHGLALTLEQWGQCSDRAAAIREENGVLQNQPDLCWEETGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGTSRXXXXXXXXXXXXXXSSGXXGEGXXXXXXXXXXXXXVTHPLMKKGMSHCYGTYPRERCDIANPDFPVQSFVPTTTELLEAASGH--YSWPSNILNLAGVFPSWDAGRTVLRHFNHGTRVAVMRDGTVNTAGRDDMYDELRKTKGMNGMTLEKYLPLHKDAVKIVDNQKAAASARKRKGAPXXXXXXXXXXRGALERSRDDGESDGKRACGRAGAGEGGG------------------------------VGDRGGGXXXXXXXXAAAXXXXXXXXXXXXL---GRG-ASRTLDTLMRPGMPLHPGLFLTKPRQIIDRDCPVAFFAPSTTKLLEDVRGTYACPPEVVNRLAFEKRAKKVVKYFNLGKMVAVMRNGEVWSVEPEVMQIQLEKTRGTTGMTTKQFWPLLKEAVRLKDEIDAA-AAAVAERKRKRAPTDDGVDVIKKKTAQ--------------------VGGRAGAGE----------------------GXXXXXXXXXXDSDCITERQYC-----------------------------------------------------------------AQAEEGGGVGGRDEETTTQAAEVPVDRTPTLPSFSGLDGGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAANXXXXXXXXXXXXXXXXXXXXPIANEKGKRPARFAGVAPSAPSAPGGSVXXXXXXXXXXXETESDINAGGDDDGAASLGDVEVLVISSDEEYDNRALPGGEDASVISYDDNGGD 3424
++ GGIGTA GDR AL LNKE+ L+LTL+QW QC D A RE+ G P L WE T G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RG+ V +MK YP IANPDFPV+SF P+TT+LLE A YS P NI NL GVF + DAG V+RHFNHGTRVA MRD TV + DMYDE+R T GM G+TLE+YLP D VK VD++KAAA ARKRKG+P XXX ESDGKRACGRAG VGD GGGXXXXXXXX XXXXXXXXXXXX GRG A+ TLD PGMPL+ F + + DR+ + PSTT+L + V+GT+A P +VV+ + ++KV +NLGKMVA + W V EVMQ++L+KT GTT M+T+QF PLL+EAVRLK+ + A AAA RKRK APT DV++KKTA+ VGGRAGAG+ XXXXXXXXXXDS+C T +YC AQA EGGGVGGRDEET TQAA PV+RT TLPSFSGL GGA XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX KGKRPAR+AGVAPSA GG V ETESDINA DDDGA S G + V SSD EYD++ LPG ED SVIS DD+ G+
Sbjct: 1 MKLGGIGTASAGDRQEALDALNKEYDLSLTLQQWDQCVDEAVGCREDGGSQTELPTLHWENTDGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------RGS------------------------------------YVASLIMKH--------YPTASVPIANPDFPVESFEPSTTQLLEQARAEQRYSCPRNICNLTGVFSNRDAGERVVRHFNHGTRVAKMRDDTVRMVCKKDMYDEVRNTNGMRGLTLEQYLPHLYDGVKSVDDRKAAALARKRKGSPVACGGXXX-------------ESDGKRACGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDSGGGXXXXXXXXXXXXXXXXXXXXXXXXXGEGRGGATPTLDAFFFPGMPLNLDYFPSMKWRTYDRNARRVIYEPSTTELFKRVKGTHAFPSDVVDGEELDGDSQKVATDYNLGKMVARRGHTVKW-VPREVMQVELKKTPGTTDMSTEQFRPLLEEAVRLKELTEEAYAAAAVVRKRKGAPTGGEADVMRKKTARAAGTDVGGGADDTGGVEDAPVGGRAGAGQEGGVGGQDEETATQATGXXXXXXXXXXXXXXXXDSECSTVLEYCGAEDAPPVGGRAQAGEGGGVGGRDEETXXXXXXXXXXXXXXXXXXXXXXVSDCSTELDCSPVGGRAQAGEGGGVGGRDEETATQAAGAPVNRTSTLPSFSGLVGGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXDGHKATPAFFGVGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVGXXXXXXXXXXXTT----------TTTNKGKRPARYAGVAPSAA---GGRVDCS--------ETESDINADEDDDGAGSSGGADASVNSSDGEYDDKELPGSEDVSVISIDDSDGE 849
BLAST of mRNA_Ecto-sp13_S_contig8390.19762.1 vs. uniprot
Match: D7G4F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F3_ECTSI) HSP 1 Score: 173 bits (438), Expect = 2.800e-40 Identity = 197/390 (50.51%), Postives = 236/390 (60.51%), Query Frame = 2
Query: 782 VARRQETCTWAFPVREKIKVVCHTTRKTETARKQYNRGLAFAQLRAGGIGTAPRGDRLAALAQLNKEHGLALTLEQWGQCSDRAAAIREENGVLQNQPDLCWEETGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGTSRXXXXXXXXXXXXXXSSGXXGEGXXXXXXXXXXXXXVTHPLMKKGMSHCYGTYPRERCDIANPDFPVQSFVPTTTELLEAASGHYSWPSNILNLAGVFPSWDAGRTVLRHFNHGTRVAVMRDGT-VNTAGRDDMYDELRKTKGMNGMTLEKYLPLHKDAVKIVDNQKA-----AASARKRKGA 1933
VARR TCTW FP EK + C T++ T AR+++NRG+AF QLR GGI AP GDR AL LNKEH LTL+QW QC D RE+ + +PDL WE+T XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX + + LMK+GM T+P ++ N DFPV+SF PTTT+LLE A G Y+ PS ILNL GVF + G+ V+++FN G VAVMR G V T +DM+ EL+KT+G+ +T E+Y+PL K+AVK D Q+ A +A +R G+
Sbjct: 446 VARRHHTCTWGFPEGEKSRGYCGTSQLTARAREKFNRGIAFVQLRDGGIAMAPPGDRQKALDALNKEHRQTLTLQQWEQCVDEVVGRREKVFTMPERPDLRWEKTATEAGDGDVDHGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGCVGXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGRXXXXXXXXXXXXXXXXXXXXKRERKRVIDAPP----------------------------TLDTLMKQGMPFYLFTFPHTPQNVPNSDFPVESFQPTTTKLLEDAQGTYTCPSEILNLKGVFSDGNVGQRVVKNFNLGKMVAVMRHGKGVRTVCTEDMHAELQKTRGVTRLTPEQYMPLLKEAVKAKDGQRKRDQADAVAAAERSGS 807 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8390.19762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8390.19762.1 >prot_Ecto-sp13_S_contig8390.19762.1 ID=prot_Ecto-sp13_S_contig8390.19762.1|Name=mRNA_Ecto-sp13_S_contig8390.19762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1117bp MLESLSKHLATNHLAMTPVEAGTTKMLDNAVVKAFYPWSTHVLKLIENGRback to top mRNA from alignment at Ecto-sp13_S_contig8390:1436..5666+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8390.19762.1 ID=mRNA_Ecto-sp13_S_contig8390.19762.1|Name=mRNA_Ecto-sp13_S_contig8390.19762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8390:1436..5666+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8390:1436..5666+ >mRNA_Ecto-sp13_S_contig8390.19762.1 ID=mRNA_Ecto-sp13_S_contig8390.19762.1|Name=mRNA_Ecto-sp13_S_contig8390.19762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8390:1436..5666+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |