mRNA_Ecto-sp13_S_contig12386.1976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12386.1976.1
Unique NamemRNA_Ecto-sp13_S_contig12386.1976.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12386.1976.1 vs. uniprot
Match: D7FU50_ECTSI (CBF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU50_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 9.100e-37
Identity = 90/162 (55.56%), Postives = 98/162 (60.49%), Query Frame = 3 
Query:  225 QVEYGVLSNVENANGIVTLLKELGRETETSVAVAVAHSLRRIFTQLLDPAKNPQLPRPSPRAGDPDTVVGGSSKAGKNKNKGKKRARSEDDVG-GDIPRGALLRVSRGPRQGRRGLSGVAGGAVLGLLAGAFRVDSGVRRLPPTGPGVAHSLQFVKIEPILC 707
            QVEYGVLSNVENANGIV+LLKELGRETETSVAVA AH LRRIFTQLLDPAKNPQLPRPSPR GDPDT+VGGSSKAG                  GD  R  +  V  G  +  R          L  L       +        GP +   +QFV+IEPILC
Sbjct:   13 QVEYGVLSNVENANGIVSLLKELGRETETSVAVAAAHCLRRIFTQLLDPAKNPQLPRPSPRGGDPDTIVGGSSKAGXXXXXXXXXXXXXXXXXXGDSARSVVAGVEGGQDKAARVYQAWLEARYLDFLRVLLGWIAEFDDFHRQGPALRTLMQFVEIEPILC 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12386.1976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU50_ECTSI9.100e-3755.56CBF domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12386contigEcto-sp13_S_contig12386:2649..4984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score94.0
Seed ortholog evalue2.8e-17
Seed eggNOG ortholog2880.D7FU50
Preferred nameNOC4L
Model size708
KEGG koko:K12767,ko:K14771
KEGG Pathwayko04113,ko04138,ko04213,map04113,map04138,map04213
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140110,GO:1901360,GO:1903506,GO:1990904,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG2154@1,KOG2154@2759
EC2.7.11.1
Cds size195
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462658.6116967-UTR-Ecto-sp13_S_contig12386:2648..26691681462658.6116967-UTR-Ecto-sp13_S_contig12386:2648..2669Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12386 2649..2669 -
1681462658.6458108-UTR-Ecto-sp13_S_contig12386:3533..36391681462658.6458108-UTR-Ecto-sp13_S_contig12386:3533..3639Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12386 3534..3639 -
1681462658.6552584-UTR-Ecto-sp13_S_contig12386:4598..49841681462658.6552584-UTR-Ecto-sp13_S_contig12386:4598..4984Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12386 4599..4984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462658.6247573-CDS-Ecto-sp13_S_contig12386:2669..27021681462658.6247573-CDS-Ecto-sp13_S_contig12386:2669..2702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12386 2670..2702 -
1681462658.6348555-CDS-Ecto-sp13_S_contig12386:3371..35331681462658.6348555-CDS-Ecto-sp13_S_contig12386:3371..3533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12386 3372..3533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12386.1976.1prot_Ecto-sp13_S_contig12386.1976.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12386 2670..3533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12386.1976.1

>prot_Ecto-sp13_S_contig12386.1976.1 ID=prot_Ecto-sp13_S_contig12386.1976.1|Name=mRNA_Ecto-sp13_S_contig12386.1976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
MTLAVIFREERCCGCRGGQDKAAGVYQAWLEARYLDFLRVLFGWIAEFDD
FHRRGPALRTPCSS*
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mRNA from alignment at Ecto-sp13_S_contig12386:2649..4984-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12386.1976.1 ID=mRNA_Ecto-sp13_S_contig12386.1976.1|Name=mRNA_Ecto-sp13_S_contig12386.1976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12386:2649..4984- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTAGAGTCGATTTCTCCCTATGTGGAAACCCCTAAATGCCGGCTTCT
CAACCGAGCGCCTGTCAACTTCTTCGTAGCCTTTTTTTTCTGAGCCCGAA
ATTTCTCAACGCCTATACTCCCAGGTTTTCTTTTTCGTGGTCGTGTCTCC
CAGGTTCTCTTCTGTATGTACATATCGTTAAAACGTAACGCCCTTGCTGT
TTCTTTCTCTTGACCTGTGCACACCAGGTCGAGTACGGGGTCCTGTCGAA
TGTCGAGAATGCCAACGGCATCGTGACCCTGCTCAAGGAGCTCGGCCGTG
AGACCGAGACCTCCGTGGCGGTTGCGGTCGCTCACAGCCTCAGGAGAATC
TTCACGCAGCTCTTAGATCCGGCCAAGAACCCCCAGGTACACGCCACCCG
GAAACCATACCGTAGGGATGCGGAACATAGCACCCCCCCTGGACCGGTTT
TCAAAGCTCGATTACTCCACGACGAAGAGGATGTCATAATGCGTTGTCGG
AAATCTCTCGACGAGATGGATGTCGTGTCTGTGTACGTATGTACCTGATG
GAGGACGCAAGCCGGGTACCCACAACCGGGTACGTTTTGTTGGGGTGCAC
CTCAAGAGCACACTGTCTACAGTTTGAAAGCGGCCATGTTTAAAGACAGG
TGTGTTGTCGGATGGATGGAGGTCACTGTTATTTTTTTTTCTTTTCGTTT
GTGTAGTTTTATCTCTGTGGGTGACGTCCGCACCAAACGTCATGACTAAC
TACTGTAAATATTTGCCTTTGCAACCTTGAACTGAATACACAACCACCGA
CGCAACACGGGCGTTTACACTCTGTCGGTGTTGCTGCTCCTTATGAAGGA
TGAATCTCGTTGCTAAGCTAGAATATCGAACTGCCGTGATACCCACCGAA
AGTCGTCTTCGGCCACACCCCACGTAGATGAGATAACAATCATCCGAAGC
AAAAGTCGCGGTCGTGTGGTCGTTCAGATTCCCGCCCACGGTTTCAGGCG
CGCGCCCGTTCGAAATACCGCCGGTTTGATGTCGATTCTCGTACGATACT
GCCTATCGTTTGAGCCGCTGCCACGCGCTCCGTGGCTTCACCGCACATGC
ACCGTCTCCGGAATGCACTTCCTGCAGAACGTGCTGGGAAATAAGATACG
TCAAGATTCGGCCGAGAATCAGTTTCTTCGTTCATCGCCAGGATCGAGTA
CAGGTTGCTACCATGGTGTGGGGTCCACCGCTTACCTATTTTTCTTGCGC
CCATTGTTTCGTGACATTTTTTGAGGCTGCCTCTGTTTTTCTGAACGAAC
TGCTTCTTTTTTTACTGCGGGGGAACTTTCTGTATTGTCCCGCAGCTTCC
TCGCCCTTCCCCCAGAGCAGGCGATCCCGACACAGTCGTGGGGGGCAGCA
GCAAGGCTGGCAAGAACAAAAATAAGGGAAAGAAGCGTGCTCGTTCCGAA
GATGACGTTGGCGGTGATATTCCGCGAGGAGCGTTGCTGCGGGTGTCGAG
GGGGCCAAGACAAGGCCGCCGGGGTCTATCAGGCGTGGCTGGAGGCGCGG
TACTTGGACTTCTTGCGGGTGCTTTTCGGGTGGATAGCGGAGTTCGACGA
CTTCCACCGACGGGTGATGTCATGTTCGGCAGGAATTTCGCTGCCGTGGC
AACATGCGCTGCACTTGTTAAATCCCAGACTTTGCACCACTGTACCTATA
TTTCTCTTGTTGAAACTCGGATTCTGCACTGTACCTACATTTCTTGCCAA
CAGGAGATGGGGGTTTCGGGGGAGCAGACAGAGAGACAACACGTCGTGTG
TGCGTCCCTATATTGGCCATATCCCAGGGACTGTCACTCACTCGTGAATC
AGTGCGTCAAGCCCTCTAGTAGCAAGCGTAGTCGACCGGATGTAGTAGTT
GGTAATTGCGTTGTCCCGCATTGCTTCAACGCGGAGATCTGTCCCAGGTG
CGCGCCTCCCCCAGCCTGAAAACCCTACCATGCGGAGCTCTCAAGCGATA
TCTCGCAACGCGGCTCAGTGCGTCGCCCTTCCGGAATATGATCAAGTGTT
TTCGGTGTGTCGTTTTCCCCGAAGGGTGCTCTTCTCTCCCTGTCCGCGCT
CTCTCTCCTGTTCCGGCACATCAGTCTCACGCTCTGTTTTCCGTCGTCAT
CCGCACTCCCGCCCCTCCCAGAGTTTTTTTACATTTGAAGATGTGCGTAG
GCGTCTCTTTGTTACTGCACATTTAGTCAACTGTCTGCGTGCGGAATTAA
TATACCTTGTCCGCATCCACTCCCCTTGCCAGGGCCCGGCGTTGCGCACT
CCTTGCAGTTCGTGAAGATCGAACCCATTCTGTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12386:2649..4984-

>mRNA_Ecto-sp13_S_contig12386.1976.1 ID=mRNA_Ecto-sp13_S_contig12386.1976.1|Name=mRNA_Ecto-sp13_S_contig12386.1976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12386:2649..4984- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTTGGCGGTGATATTCCGCGAGGAGCGTTGCTGCGGGTGTCGAGG
GGGCCAAGACAAGGCCGCCGGGGTCTATCAGGCGTGGCTGGAGGCGCGGT
ACTTGGACTTCTTGCGGGTGCTTTTCGGGTGGATAGCGGAGTTCGACGAC
TTCCACCGACGGGGCCCGGCGTTGCGCACTCCTTGCAGTTCGTGA
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