mRNA_Ecto-sp13_S_contig839.19758.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig839.19758.1
Unique NamemRNA_Ecto-sp13_S_contig839.19758.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig839.19758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig839contigEcto-sp13_S_contig839:3909..4123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size215
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_004840.1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464108.7961533-CDS-Ecto-sp13_S_contig839:3908..40671681464108.7961533-CDS-Ecto-sp13_S_contig839:3908..4067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig839 3909..4067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464108.806537-UTR-Ecto-sp13_S_contig839:4067..41231681464108.806537-UTR-Ecto-sp13_S_contig839:4067..4123Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig839 4068..4123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig839.19758.1prot_Ecto-sp13_S_contig839.19758.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig839 3909..4067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig839.19758.1

>prot_Ecto-sp13_S_contig839.19758.1 ID=prot_Ecto-sp13_S_contig839.19758.1|Name=mRNA_Ecto-sp13_S_contig839.19758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MFNSRLGTSADAECVWIPMPSSTGCSAVPFSAYAGLASWEERARGGGSAR
VR*
back to top

mRNA from alignment at Ecto-sp13_S_contig839:3909..4123-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig839.19758.1 ID=mRNA_Ecto-sp13_S_contig839.19758.1|Name=mRNA_Ecto-sp13_S_contig839.19758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig839:3909..4123- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCCGTCTGCATTGATTCGATGAGTGATGTGAACAGGAGTCAGGC
CGTCCTATGTTTAATTCACGTCTAGGAACGAGCGCGGATGCAGAATGCGT
TTGGATACCAATGCCAAGCAGTACAGGTTGTTCGGCCGTACCTTTCTCGG
CTTATGCCGGGCTAGCATCATGGGAGGAGCGCGCGAGGGGGGGGGGGAGT
GCAAGAGTAAGATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig839:3909..4123-

>mRNA_Ecto-sp13_S_contig839.19758.1 ID=mRNA_Ecto-sp13_S_contig839.19758.1|Name=mRNA_Ecto-sp13_S_contig839.19758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig839:3909..4123- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTAATTCACGTCTAGGAACGAGCGCGGATGCAGAATGCGTTTGGAT
ACCAATGCCAAGCAGTACAGGTTGTTCGGCCGTACCTTTCTCGGCTTATG
CCGGGCTAGCATCATGGGAGGAGCGCGCGAGGGGGGGGGGGAGTGCAAGA
GTAAGATAA
back to top