mRNA_Ecto-sp13_S_contig83894.19757.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig83894.19757.1
Unique Name	mRNA_Ecto-sp13_S_contig83894.19757.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: A0A6H5KYG4_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYG4_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.080e-23
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1

Query:   19 GVSAEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            GVSAE+VLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI
Sbjct:   56 GVSAEDVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 100

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: A0A482SDS4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDS4_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 4.230e-13
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1

Query:   22 VSAEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            +S   +LK P+WP KWPF  +DFSR DES+D +FYSQPR VYHI
Sbjct:    6 LSISGILKNPQWPAKWPFSPEDFSRQDESTDTNFYSQPRFVYHI 49

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: A0A7S0T4W6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T4W6_9RHOD)

HSP 1 Score: 65.1 bits (157), Expect = 3.140e-12
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1

Query:   22 VSAEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            V   +VLK+PKWPEKWPF   DF+R DES+D  FYSQPR V HI
Sbjct:   62 VPISDVLKSPKWPEKWPFNSRDFTRADESADNIFYSQPRFVTHI 105

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: A0A6P5FQU7_ANACO (uncharacterized protein LOC109717357 isoform X2 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FQU7_ANACO)

HSP 1 Score: 63.5 bits (153), Expect = 1.090e-10
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1

Query:    1 ATRRRRGVS-AEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            + R R+GVS  E+VLK  KWPEK+PF E+DFSR DES D  FYS+PR V HI
Sbjct:   75 SARPRQGVSPVEQVLKNVKWPEKFPFKEEDFSRFDESPDSLFYSEPRFVTHI 126

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: A0A7S0ZG10_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZG10_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 1.290e-10
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1

Query:   22 VSAEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            V+  ++L  PK+PEKWPF + DF+RMDE+ D DFYSQPR V HI
Sbjct:   61 VTVADILANPKFPEKWPFSQKDFTRMDETDDADFYSQPRFVTHI 104

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: A0A199VPU0_ANACO (Methyltransf_11 domain-containing protein n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A199VPU0_ANACO)

HSP 1 Score: 63.5 bits (153), Expect = 1.680e-10
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1

Query:    1 ATRRRRGVS-AEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            + R R+GVS  E+VLK  KWPEK+PF E+DFSR DES D  FYS+PR V HI
Sbjct:   75 SARPRQGVSPVEQVLKNVKWPEKFPFKEEDFSRFDESPDSLFYSEPRFVTHI 126

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: K0RGX7_THAOC (Methyltransf_11 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RGX7_THAOC)

HSP 1 Score: 61.6 bits (148), Expect = 5.850e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1

Query:   28 AEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            AE VL++PK+P +WP+  +DF R DES DG FY QPRLVYHI
Sbjct:   47 AEGVLRSPKFPPEWPYSPEDFMRQDESDDGLFYEQPRLVYHI 88

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: B8C942_THAPS (Methyltransf_11 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C942_THAPS)

HSP 1 Score: 60.1 bits (144), Expect = 1.540e-9
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1

Query:   28 AEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            AE+VL  PK+P +WP+   DF R DES DG FY QPRLVYHI
Sbjct:    5 AEKVLTNPKFPPQWPYSPSDFQRSDESDDGIFYDQPRLVYHI 46

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: A0A7R9Z426_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z426_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 1.550e-9
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1

Query:   28 AEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            AE+VLK PKWPEK+PF +  F R DE+SD  FY  PR VYHI
Sbjct:    3 AEQVLKDPKWPEKFPFPDSSFRRFDETSDTVFYEDPRFVYHI 44

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BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Match: A0A2P6U229_CHLSO (Ubiquinone menaquinone biosynthesis methyltransferase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U229_CHLSO)

HSP 1 Score: 57.0 bits (136), Expect = 3.390e-8
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1

Query:   28 AEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHI 153
            AE+VL  P+WPE++PF  + F R DESSD DFY QPR V HI
Sbjct:   77 AEQVLLDPQWPEQFPFRPEFFQRYDESSDADFYEQPRFVTHI 118

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig83894.19757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19


Match Name	E-value	Identity	Description
A0A6H5KYG4_9PHAE	1.080e-23	97.78	Methyltransf_11 domain-containing protein n=2 Tax=...	[more]
A0A482SDS4_9ARCH	4.230e-13	63.64	Uncharacterized protein n=1 Tax=archaeon TaxID=190...	[more]
A0A7S0T4W6_9RHOD	3.140e-12	65.91	Hypothetical protein (Fragment) n=1 Tax=Erythrolob...	[more]
A0A6P5FQU7_ANACO	1.090e-10	63.46	uncharacterized protein LOC109717357 isoform X2 n=...	[more]
A0A7S0ZG10_9RHOD	1.290e-10	61.36	Hypothetical protein (Fragment) n=1 Tax=Timspurcki...	[more]
A0A199VPU0_ANACO	1.680e-10	63.46	Methyltransf_11 domain-containing protein n=2 Tax=...	[more]
K0RGX7_THAOC	5.850e-10	64.29	Methyltransf_11 domain-containing protein n=1 Tax=...	[more]
B8C942_THAPS	1.540e-9	64.29	Methyltransf_11 domain-containing protein n=1 Tax=...	[more]
A0A7R9Z426_9CHLO	1.550e-9	64.29	Hypothetical protein n=1 Tax=Chlamydomonas euryale...	[more]
A0A2P6U229_CHLSO	3.390e-8	61.90	Ubiquinone menaquinone biosynthesis methyltransfer...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig83894	contig	Ecto-sp13_S_contig83894:329..481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	101.3
Seed ortholog evalue	1.4e-19
Seed eggNOG ortholog	2880.D7FVV9
Model size	153
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
EggNOG free text desc.	Methyltransferase domain
EggNOG OGs	28JTZ@1,2QS7X@2759
Ec32 ortholog description	Methyltransferase type 11
Ec32 ortholog	Ec-01_002330.1
Cds size	153
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464108.765786-CDS-Ecto-sp13_S_contig83894:328..481	1681464108.765786-CDS-Ecto-sp13_S_contig83894:328..481	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig83894 329..481 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig83894.19757.1	prot_Ecto-sp13_S_contig83894.19757.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig83894 329..481 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig83894:329..481+
coding sequence from alignment at Ecto-sp13_S_contig83894:329..481+

protein sequence of mRNA_Ecto-sp13_S_contig83894.19757.1

>prot_Ecto-sp13_S_contig83894.19757.1 ID=prot_Ecto-sp13_S_contig83894.19757.1|Name=mRNA_Ecto-sp13_S_contig83894.19757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
ATRRRRGVSAEEVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYH
I

mRNA from alignment at Ecto-sp13_S_contig83894:329..481+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig83894.19757.1 ID=mRNA_Ecto-sp13_S_contig83894.19757.1|Name=mRNA_Ecto-sp13_S_contig83894.19757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83894:329..481+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGCGACGTCGTAGAGGGGTGTCCGCAGAGGAGGTGCTGAAGGCGCC
CAAGTGGCCGGAGAAGTGGCCCTTCTATGAGGACGACTTCAGCCGCATGG
ACGAGTCCAGCGACGGGGATTTCTACTCGCAGCCGCGGCTCGTCTACCAC
ATC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83894:329..481+

>mRNA_Ecto-sp13_S_contig83894.19757.1 ID=mRNA_Ecto-sp13_S_contig83894.19757.1|Name=mRNA_Ecto-sp13_S_contig83894.19757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83894:329..481+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGCGACGTCGTAGAGGGGTGTCCGCAGAGGAGGTGCTGAAGGCGCC
CAAGTGGCCGGAGAAGTGGCCCTTCTATGAGGACGACTTCAGCCGCATGG
ACGAGTCCAGCGACGGGGATTTCTACTCGCAGCCGCGGCTCGTCTACCAC
ATC