mRNA_Ecto-sp13_S_contig83852.19751.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83852.19751.1
Unique NamemRNA_Ecto-sp13_S_contig83852.19751.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.960e-36
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1
Query:    1 FYDRMRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            FYDRMRPYLPLLELLERDVPST DGTTSSVVY+LPVNLLLDRVMQIPSETALSNAYP GQLLRGEEATANSL
Sbjct:  257 FYDRMRPYLPLLELLERDVPSTDDGTTSSVVYDLPVNLLLDRVMQIPSETALSNAYPGGQLLRGEEATANSL 328          
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.970e-36
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1
Query:    1 FYDRMRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            FYDRMRPYLPLLELLERDVPST DGTTSSVVY+LPVNLLLDRVMQIPSETALSNAYP GQLLRGEEATANSL
Sbjct:  248 FYDRMRPYLPLLELLERDVPSTDDGTTSSVVYDLPVNLLLDRVMQIPSETALSNAYPGGQLLRGEEATANSL 319          
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: A0A6H5JG22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG22_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 9.700e-33
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 FYDRMRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            FYDRMR YLPLLELLERDVPS HDGTTSSVVY+LPVNLLL+RVMQIPSET LS AYP  +LLRGEEA ANSL
Sbjct:  247 FYDRMRTYLPLLELLERDVPSIHDGTTSSVVYDLPVNLLLERVMQIPSETVLSEAYPGWELLRGEEAAANSL 318          
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.550e-32
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 FYDRMRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            FYD MRPYLPLLELLERDVPSTHDGTTSSVV +LPVNLLLDRVMQIPSETALS AYP G+LLRGEEA AN L
Sbjct:  138 FYDCMRPYLPLLELLERDVPSTHDGTTSSVVCDLPVNLLLDRVMQIPSETALSEAYPGGKLLRGEEAAANLL 209          
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.340e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    1 FYDRMRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            FY RMRPYLP+L+LLERDVPSTHDG TSSV Y++PVNLLLDRVMQI SETALS AYP G++LRGEEA AN L
Sbjct:  328 FYGRMRPYLPMLQLLERDVPSTHDGGTSSV-YDIPVNLLLDRVMQIQSETALSEAYPGGKILRGEEAAANRL 398          
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: D7FUZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ8_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 9.430e-27
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 FYDRMRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            F +RMR YLPLL++LERDVPST  G TS+VVY++PVNLLLDR M++ SETALS AYP G+LLRGEEA  NSL
Sbjct:   21 FSNRMRQYLPLLQILERDVPSTQQGKTSAVVYDVPVNLLLDRDMKLASETALSEAYPAGKLLRGEEAAMNSL 92          
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.130e-24
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 FYDRMRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            F +RMR YLPLL++LERDVPST  G TS+VVY++PVNLLLDR M++ SETALS AYP G+LLR EEA  NSL
Sbjct:  223 FSNRMRQYLPLLQVLERDVPSTQQGKTSAVVYDVPVNLLLDRDMKLASETALSEAYPAGKLLREEEAAVNSL 294          
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: A0A6H5K2F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 6.200e-24
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 FYDRMRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            FY RMRPYLPLL+L++RDVPS  D T SS V+++PVNLLL R MQI SETALS  +P G+LLRGEE  ANSL
Sbjct:  310 FYSRMRPYLPLLQLIKRDVPSAADETASSAVFDIPVNLLLHRTMQIESETALSETHPGGKLLRGEEIEANSL 381          
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: A0A6H5KML3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML3_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.680e-21
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   13 MRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            MRPYLPLL+L++RDVPS  D T SS V+++PVNLLL R MQI SETALS  +P G+LLRGEE  ANSL
Sbjct:    1 MRPYLPLLQLIKRDVPSAADETASSAVFDIPVNLLLHRTMQIESETALSETHPGGKLLRGEEIEANSL 68          
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Match: A0A6H5KS83_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS83_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.310e-21
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 FYDRMRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSNAYPEGQLLRGEEATANSL 216
            F +RMR YLPLL +LER+VPST +G +S+VVY++PVNLLL R M++ SETALS  Y  G++LRGEEA ANSL
Sbjct:  205 FNNRMRQYLPLLRVLERNVPSTQEGKSSAVVYDVPVNLLLARDMKLVSETALSETYAAGKILRGEEAAANSL 276          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83852.19751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KJM6_9PHAE1.960e-3695.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE1.970e-3695.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG22_9PHAE9.700e-3386.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ8_9PHAE1.550e-3288.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE1.340e-2880.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ8_ECTSI9.430e-2772.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWC0_9PHAE5.130e-2470.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2F5_9PHAE6.200e-2469.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML3_9PHAE1.680e-2169.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS83_9PHAE2.310e-2165.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83852contigEcto-sp13_S_contig83852:355..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size216
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464108.5384853-CDS-Ecto-sp13_S_contig83852:354..5581681464108.5384853-CDS-Ecto-sp13_S_contig83852:354..558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83852 355..558 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464108.5481706-UTR-Ecto-sp13_S_contig83852:558..5701681464108.5481706-UTR-Ecto-sp13_S_contig83852:558..570Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig83852 559..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83852.19751.1prot_Ecto-sp13_S_contig83852.19751.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83852 355..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83852.19751.1

>prot_Ecto-sp13_S_contig83852.19751.1 ID=prot_Ecto-sp13_S_contig83852.19751.1|Name=mRNA_Ecto-sp13_S_contig83852.19751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MRPYLPLLELLERDVPSTHDGTTSSVVYELPVNLLLDRVMQIPSETALSN
AYPEGQLLRGEEATANSL
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mRNA from alignment at Ecto-sp13_S_contig83852:355..570-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83852.19751.1 ID=mRNA_Ecto-sp13_S_contig83852.19751.1|Name=mRNA_Ecto-sp13_S_contig83852.19751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83852:355..570- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTATGATCGCATGCGGCCGTACTTGCCCCTGCTAGAGCTGCTGGAGCG AGACGTTCCGTCGACACACGACGGAACGACGTCGTCTGTCGTGTACGAAC TCCCGGTCAATCTGCTGCTCGACCGTGTCATGCAGATTCCGTCGGAGACT GCGCTGTCGAACGCATACCCGGAAGGGCAGCTATTGCGCGGAGAAGAGGC AACCGCAAATTCGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83852:355..570-

>mRNA_Ecto-sp13_S_contig83852.19751.1 ID=mRNA_Ecto-sp13_S_contig83852.19751.1|Name=mRNA_Ecto-sp13_S_contig83852.19751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83852:355..570- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCCGTACTTGCCCCTGCTAGAGCTGCTGGAGCGAGACGTTCCGTC
GACACACGACGGAACGACGTCGTCTGTCGTGTACGAACTCCCGGTCAATC
TGCTGCTCGACCGTGTCATGCAGATTCCGTCGGAGACTGCGCTGTCGAAC
GCATACCCGGAAGGGCAGCTATTGCGCGGAGAAGAGGCAACCGCAAATTC
GCTG
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