mRNA_Ecto-sp13_S_contig12385.1975.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12385.1975.1
Unique NamemRNA_Ecto-sp13_S_contig12385.1975.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12385.1975.1 vs. uniprot
Match: A0A6H5L4W1_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W1_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.430e-51
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 CSSCGCKISAGQLQLGAFYMHEDRFTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGP 219
            CSSCGCKISAGQLQLGAFYMHEDRFTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGP
Sbjct:   88 CSSCGCKISAGQLQLGAFYMHEDRFTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGP 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12385.1975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4W1_9PHAE2.430e-51100.00PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12385contigEcto-sp13_S_contig12385:1601..3713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size222
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_004740.2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462658.5705624-CDS-Ecto-sp13_S_contig12385:1600..16421681462658.5705624-CDS-Ecto-sp13_S_contig12385:1600..1642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12385 1601..1642 +
1681462658.5817628-CDS-Ecto-sp13_S_contig12385:3534..37111681462658.5817628-CDS-Ecto-sp13_S_contig12385:3534..3711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12385 3535..3711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12385.1975.1prot_Ecto-sp13_S_contig12385.1975.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12385 1601..3711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12385.1975.1

>prot_Ecto-sp13_S_contig12385.1975.1 ID=prot_Ecto-sp13_S_contig12385.1975.1|Name=mRNA_Ecto-sp13_S_contig12385.1975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
CSSCGCKISAGQLQLGAFYMHEDRFTLLRWHHQSCVDAPECLTSPMDLCG
IEDLSPEDVDEVCRWLAHGRSGP
back to top

mRNA from alignment at Ecto-sp13_S_contig12385:1601..3713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12385.1975.1 ID=mRNA_Ecto-sp13_S_contig12385.1975.1|Name=mRNA_Ecto-sp13_S_contig12385.1975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2113bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12385:1601..3713+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAGCTCATGCGGTTGCAAGATTTCGGCTGGACAGCTCCAGGTAAAAGG
AACGGCAGCAGCGTACAGCAGTGCCCCCAACTTGTTTCCCGCTCATGCAG
CTAGCTGAGCACACTTTTTTTGTTTCTCCTGATGTACCCGCCCCCCCCGG
TCAAAAGCGGAGTATTGAATTTCGGGCGAGTCAAATCAAATAACACAAGT
ACAAAACTTGGTTGTTCTCTCATACAACCTTGGGTTTGTTGGTGATCCGG
CCTCTGCCCCCCCGTGCCTCGATGATCGTGGTCGTTGCGGACACTTTTCG
GCGTCGCTTCATGCCTGACCCAAGCCGGCATTCCGGCATTAATTTGCCCC
GTTATCCGTTGATAATGGCTTCATCTGTTATTTCTGTCTTCCCAACACGT
GGAAGAAAAAAACGAGCACAAACAAGCGGCAACTGCGACCGACCGTACGG
TTTCATGCCAACGAAAAACCCTTCGGCAGCACCGCTACGCGGGATGTATG
TATGTGACGAAAAAATCGACCGCCGCTCTCTTGCCCTTTCTGGAGCCAAA
AGTCGTGTACTTTCAGTTCAGCCGTATCCGTGTCTTCGCGAAGGAAGTGT
AAAGAAGTACAATGTATGTGTTGTTGAGCAAAACCGACAACGAACCACCA
AGTTTGGTCGGTTCGTCGTCAATGGCGTATGCGCGACGTAACGGGTCAGG
GCGGACCGGAAGTGCGCCGGACTCCCCCTTCAGAATCTCTGAACAATATG
GCGAAATTACTCCGTACTGAATTGCGACGACGAAAGCAGCACGCACAGCA
ACAGCTGTTTCGACCCGCACTTCAACGAAGTGACAGGAAAGCTCATTCAC
GTGTGTTGGTGGCGCAGCGTGGGTGATATCGTTTTCTGGCACCGGCGATA
TATAATCGTGTCGCCCCCCCAGCAGGTTAGTGTAGCGAGTTAAACGTGGC
CAAGGTTCGCCGCGCACCCCACAGCCACAGGAATACTTTGCTCACGAGCT
TCTTGCCGCTTTTATTCTTGTGGATCACAATACCGGGGCACGTCGTGAGC
AAGCGATCGTCATCCTTCCGACCACCTATGCAGGGTATTGAGAGTATACA
GACCCTATCCCTAACCCAAACCCTCACCCCAAAGCACGGATTGAATCCTT
TGTCCCATAGTTTGTGTGATCAATTTTGCTGCGTAGACTACTTCACCCTT
CGCGTATTCCACTGTGGTGGCCTGATGGTGTTGTTTCAAAAGTTTTTCTA
GCCGCCCGTAGCAAGTAACCGAACTTTTAATCCAACGAAAGATCATTGAA
GTTGTACTTTTGCTGTATCCCCCCGTTCAAGCTTTTGCTCTCACCACCCT
CCTTTCCGAGCTAACTTTGCTCGTGATCTCAACAACGGCAGTTGCTGATG
GCTTCGCCTGATGTTGCAACATACTTTTCCTTGTGGGCGCTAGTGAACAC
CAGCACGGTAGAATATTCACTTGCGGGGGCGTGTTTTTCTGTGGTCAGCA
CCTTTCGTGTATCTTGATGTTCAGGTGCATTAGTCTTTTCGTTCCAGTCT
GTTCGCCCGCCACGCCGTGAGGTATTGGTTACATATCGAGTATGTATTCT
AGACCTATTCTAGGGTTGCCGCACCAGCCGGGTCCCACAGGAGCAACGTA
AACACAGAAGTTTCGCGTTTAGACTAGAAGCACAATTTTTTCTCGTTGGC
TCTCGGTGTAATCCAGCAAGGCACGCACAGCGGAGCGATACATACGTACG
CGTTGGAGGTACACGTCACACGCGCAATGAAGCGGTTCATTGTACACCAT
GCATAGCCCATTGATCATGCATCATTTATCGCTCTACAGCATTTGTAGTC
GGTTGTAATTTTTTTTATCACGCTCGCTTATTCAACAACCCCTTCGCCGC
ATCCTTTCGCCACGACGATACCGTGCCCACGCAGCTCGGAGCGTTCTACA
TGCACGAGGACAGGTTCACGCTCCTCAGGTGGCACCACCAGTCGTGCGTA
GACGCGCCCGAATGCCTCACTAGTCCGATGGACCTGTGCGGAATAGAAGA
CCTGTCGCCCGAAGATGTGGACGAGGTCTGCCGCTGGTTGGCCCACGGAA
GAAGCGGGCCAGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12385:1601..3713+

>mRNA_Ecto-sp13_S_contig12385.1975.1 ID=mRNA_Ecto-sp13_S_contig12385.1975.1|Name=mRNA_Ecto-sp13_S_contig12385.1975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12385:1601..3713+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAGCTCATGCGGTTGCAAGATTTCGGCTGGACAGCTCCAGCTCGGAGC
GTTCTACATGCACGAGGACAGGTTCACGCTCCTCAGGTGGCACCACCAGT
CGTGCGTAGACGCGCCCGAATGCCTCACTAGTCCGATGGACCTGTGCGGA
ATAGAAGACCTGTCGCCCGAAGATGTGGACGAGGTCTGCCGCTGGTTGGC
CCACGGAAGAAGCGGGCCA
back to top