mRNA_Ecto-sp13_S_contig8377.19746.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8377.19746.1
Unique NamemRNA_Ecto-sp13_S_contig8377.19746.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: A0A6H5JNF6_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF6_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 7.710e-142
Identity = 196/212 (92.45%), Postives = 200/212 (94.34%), Query Frame = 1 
Query:    1 KVSDKAELKRTQYFPGLGWLLTRKLFGELGPKWPREHWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPGYAKSMTENYERRMEARIASARHINNLNDLPTSSTPQGNEQVVMWYTLQQTEEPPARRGAKPKPPPFKPLSDVFGIWHEYRRGEHSGMHSLRYWNAHVMLINAAK 636
            +VSDKAELKRT YFPGLGWLLTRKLF ELGPKWP +HWDHWLRDPKQH GRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNI YNQDASFSWKSAQ G XXXXSPPGYAK MTENYERRMEARIASARHINNLNDLPTS TPQ NEQ+VMWYTLQ+TE PPARRGAKPKP PFKPLSDVFGIWHEYRRGEHSGMHSLRYWNAHVMLINAAK
Sbjct:  249 RVSDKAELKRTLYFPGLGWLLTRKLFDELGPKWPSQHWDHWLRDPKQHLGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIGYNQDASFSWKSAQPGGXXXXSPPGYAKGMTENYERRMEARIASARHINNLNDLPTSLTPQENEQLVMWYTLQETEGPPARRGAKPKPSPFKPLSDVFGIWHEYRRGEHSGMHSLRYWNAHVMLINAAK 460
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: D8LRW8_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW8_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 6.930e-79
Identity = 126/212 (59.43%), Postives = 130/212 (61.32%), Query Frame = 1 
Query:    1 KVSDKAELKRTQYFPGLGWLLTRKLFGELGPKWPREHWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPGYAKSMTENYERRMEARIASARHINNLNDLPTSSTPQGNEQVVMWYTLQQTEEPPARRGAKPKPPPFKPLSDVFGIWHEYRRGEHSGMHSLRYWNAHVMLINAAK 636
            +VSDKAELKRTQYFPGLGWLLTRKLF ELGPKWPREHWDHWLRDPKQHQGREC+YPE                                                                              DLPTSST QG+EQVVMWYTLQQTEEPPARRGAKP PPPFKPLS+VFGIWHEYRRGEHSGMHS RYWNAHVMLINAAK
Sbjct:  208 RVSDKAELKRTQYFPGLGWLLTRKLFDELGPKWPREHWDHWLRDPKQHQGRECVYPE------------------------------------------------------------------------------DLPTSSTQQGDEQVVMWYTLQQTEEPPARRGAKPNPPPFKPLSNVFGIWHEYRRGEHSGMHSFRYWNAHVMLINAAK 341
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: A0A6S8E5K5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8E5K5_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.240e-49
Identity = 91/210 (43.33%), Postives = 124/210 (59.05%), Query Frame = 1 
Query:    7 SDKAELKRTQYFPGLGWLLTRKLF-GELGPKWPREHWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPGYAKSMTENYERRMEARIASARHINNLNDLPTSSTPQGNEQVVMWYTLQQTEEPPARRGAKP-KPPPFKPLSDVFGIWHEYRRGEHSGMHSLRYWNAHVMLINA 630
            +DK EL+R+ +FPGLGWLL R L+  ELGPKW     DHWLRD KQH+GRE +YP VPRTYHNG +GTFMD   H + F+ I YN D SF W+S             Y   + + YE  +  RI++A HI + +DLP       N  +V WY  +  ++      A P +PP F  L++ F +WHE++R +H+G+H   Y    + LIN+
Sbjct:  186 ADKRELRRSVWFPGLGWLLPRHLWIHELGPKWXXXXXDHWLRDKKQHKGRETVYPAVPRTYHNGAQGTFMDSWHHQKYFQPIQYNIDHSFFWESHN-----------YLSVVRDTYESNLRTRISNAIHIASFHDLPQHH----NTPIVFWYGWKPNDQ------ASPFRPPAFICLAEPFHLWHEFQRTDHNGLHFALYQAQPLFLINS 374
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: A0A7S3XJJ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJJ4_HETAK)

HSP 1 Score: 167 bits (424), Expect = 2.200e-48
Identity = 80/159 (50.31%), Postives = 102/159 (64.15%), Query Frame = 1 
Query:    1 KVSDKAELKRTQYFPGLGWLLTRKLFGELGPKWPREHWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPGYAKSMTENYERRMEARI----ASARHINNLNDLPTSSTPQGNEQVVMWYTL 465
            KV D+  L RT+YFPGLGWLLTR+L+ EL PKWP+ HWDH+LRDPKQH+GRE +YPEVPRT+HNG +GTFMD   H + F +I YN DA+F W            PP YA++  E YE R+ AR+    A A  ++  + LP SS         +WY +
Sbjct:  100 KVRDRGALHRTEYFPGLGWLLTRRLWDELRPKWPKAHWDHFLRDPKQHKGRESVYPEVPRTFHNGKKGTFMDLGTHKKYFADIAYNTDATFRWPHR---------PPSYAQAAQEVYEPRLAARLRAAPAPAGGLDGWDALPGSS----GADAALWYRV 245
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: A0A7S3H8D0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8D0_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.880e-48
Identity = 81/218 (37.16%), Postives = 125/218 (57.34%), Query Frame = 1 
Query:    1 KVSDKAELKRTQYFPGLGWLLTRKLFGE-LGPKWPREHWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPG--------YAKSMTENYERRMEARIASARHINNLNDLPTSSTPQGNEQVVMWYTLQQTEEPPARRGAKPKPPPFKPLSDVFGIWHEYRRGEHSGMHSLRYWNAHVMLIN 627
            KV D   L+RT YFPGLGW+LTRKL+ E L P+WP  HWDHWLR  +  + R+ IYP+VPRTYHNG++GTFM+   H++ F++I YN DAS +W    +G        G        Y +  ++  + R+E  +   +H+ ++ DL        +E + +W  +            +  P  F+P++  FG+WHE+RRG H G+H   + + +++L+N
Sbjct:   27 KVHDPFALRRTDYFPGLGWVLTRKLYKEELEPRWPTSHWDHWLRSEETSKHRDIIYPQVPRTYHNGIKGTFMNLETHNKYFRDIGYNTDASITWPITASGVQNNNIDSGSNGVSKSVYMQGHSKVNQYRVEQLVKVCKHVTSVMDLLKYK----DEVICLWVDV--------NTNCEGHPVAFEPIASFFGLWHEHRRGNHRGLHEFYFNSNYLLLLN 232
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: A0A7R9U447_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U447_9STRA)

HSP 1 Score: 155 bits (393), Expect = 8.190e-42
Identity = 78/198 (39.39%), Postives = 107/198 (54.04%), Query Frame = 1 
Query:   10 DKAELKRTQYFPGLGWLLTRKLFGELGPKWPREHWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPGYAKSMTENYERRMEARIASARHINNLNDLPTSSTPQGNEQVVMWYTLQQTEEPPARRGAKPKPPPFKPLSDVFGIWHEYRRGEHSGMHSLRYW 603
            D A L RT +FPGLGWLLTR+L+ EL  KWP +HWDHWLR P QH+GR+C++PEVPRT+H GV+G+FM+Q  HDR F  I + +D +FSW  AQ         P Y  +    YE    ++I +   I       T +  +     V W      ++             ++ L+  +G+WHE  R  H  M  LR+W
Sbjct:  223 DPAALHRTSFFPGLGWLLTRRLYDELIIKWPSQHWDHWLRSPDQHKGRDCVFPEVPRTFHGGVKGSFMNQETHDRYFDRIAHQRDPAFSWDDAQLWLGL----PPYLVATKFVYEAWTLSQITAPSPIARTGQTVTWTQEEEPSTAVFWLRPTNKQD-------------WERLAQFYGLWHERDRSAHKKM--LRFW 401
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: A0A7S2DMU5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DMU5_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.460e-41
Identity = 89/213 (41.78%), Postives = 118/213 (55.40%), Query Frame = 1 
Query:    1 KVSDKAELKRTQYFPGLGWLLTRKLFGE-LGPKWPREHWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPGYAKSMTENYERRMEARIAS--ARHINNLNDLPTSSTPQGNEQVVMWYTLQQTEEPPARRGAKPKPPPFKPLSDVFGIWHEYRRGEHSG--MHSLRYWNAHVMLI 624
            +V DKA L RT +FPGLGWLL+R+L+ E L  +WP +HWDHW+R P QH+GRE +YPEV R YH G +GTFMD   HD  FK I YN D  F W+ A          P Y  +M E YE  + A   S    H+  L++L  +        VV+W+      +   RR    +PP FK ++   GIWHE+ R  HS   +H+ R W+    L+
Sbjct:  209 RVWDKARLCRTGFFPGLGWLLSRRLWTEELASRWPDQHWDHWMRSPAQHKGREAVYPEVNRDYHAGKKGTFMDAHHHDLYFKGIDYNTDPEFRWQLADTAI------PSYLFAMQEVYEAYLAAVFTSPGTTHVAALDELEEAVG-----DVVLWHDT----DLDTRR----EPPDFKRVATYLGIWHEWPRTGHSDGTLHTFR-WHGSKALV 401
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: A0A812U012_9DINO (POMGNT1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812U012_9DINO)

HSP 1 Score: 149 bits (376), Expect = 1.530e-38
Identity = 79/218 (36.24%), Postives = 116/218 (53.21%), Query Frame = 1 
Query:    4 VSDKAELKRTQYFPGLGWLLTRKLFGELGPKWP------RE----HWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPGYAKSMTENYERRMEARIASARHINNLNDLPTSSTPQGNEQVVMWYTLQQTEEPPARRGAKPKPPPFKPLSDVFGIWHEYRRGEHSGMHSLRYWNAHVMLIN 627
            V +   L RT + PGLGWL+ R+L+ EL P WP      RE    +WDHWLR P+QHQGR  +YP+VPR YH+G  GTFM+   H + F++I+YNQD   +W+   A      +    A +  E YE R+  ++  A    + + L  +        + +W  +   E+   + GAK     F  ++  FG+WHE +R  H G+H L +   HV L+N
Sbjct:  261 VGEAKRLLRTHFLPGLGWLMLRRLWKELQPSWPDVEERRREAQMNNWDHWLRSPQQHQGRSVLYPQVPRVYHHGSLGTFMNLDTHRQYFQHIFYNQDPKITWQRPTADRPWLDA--AVADARREPYEARIMQQLRHAETPRSTSALVEALASGKAAALAVWINIS-PEDVKKKSGAKEG---FSSVAKFFGLWHEGQRAAHRGLHELWWGRTHVFLVN 472
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: A0A812K4I4_9DINO (GNTI protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812K4I4_9DINO)

HSP 1 Score: 146 bits (368), Expect = 3.960e-38
Identity = 78/218 (35.78%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:    4 VSDKAELKRTQYFPGLGWLLTRKLFGELGPKWP------RE----HWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPGYAKSMTENYERRMEARIASARHINNLNDLPTSSTPQGNEQVVMWYTLQQTEEPPARRGAKPKPPPFKPLSDVFGIWHEYRRGEHSGMHSLRYWNAHVMLIN 627
            V +   L RTQ+ PGLGWL+ R+L+ EL P WP      RE    +WDHWLR P+QHQGR  +YP+VPR +H+G  GTFM   +H++ F++I+YNQD+  +W+               A+   E YE R+  ++ SA    ++  L  +        + +W  +   E+   R GAK     F  ++  FG+WHE +R  + G+H   +   HV L+N
Sbjct:  232 VREPKGLLRTQFMPGLGWLMLRRLWKELQPNWPNVDERRREAKMCNWDHWLRSPQQHQGRSVLYPQVPRVFHHGSIGTFMSLGLHEQYFQHIFYNQDSKITWQRPTVDSPWLDLAVSAAR--LEQYEDRIVWQLRSAETPRSMPALVKALASGTASVLAIWINVN-PEDVKTRSGAKQG---FSSVAKFFGLWHEGQRALYRGLHEFWWGKKHVFLLN 443
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BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Match: A0A813CNS4_9DINO (RPS13 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CNS4_9DINO)

HSP 1 Score: 147 bits (372), Expect = 1.950e-37
Identity = 79/218 (36.24%), Postives = 118/218 (54.13%), Query Frame = 1 
Query:    4 VSDKAELKRTQYFPGLGWLLTRKLFGELGPKWP------RE----HWDHWLRDPKQHQGRECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGXXXXXSPPGYAKSMTENYERRMEARIASARHINNLNDLPTSSTPQGNEQVVMWYTLQQTEEPPARRGAKPKPPPFKPLSDVFGIWHEYRRGEHSGMHSLRYWNAHVMLIN 627
            V +   L RTQ+ PGLGWL+ R+L+ EL P WP      RE    +WDHWLR P+QHQGR  +YP+VPR +H+G  GTFM  A+H++ F++I+YNQD+  +W+               A+   E YE R+  ++ SA    ++  L  +        + +W  +   E+   R GAK     F  ++  FG+WHE +R  + G+H   +   HV L+N
Sbjct:  232 VREPKGLLRTQFMPGLGWLMLRRLWKELQPNWPNVDERRREAKMCNWDHWLRSPQQHQGRSVLYPQVPRVFHHGSIGTFMSLALHEQYFQHIFYNQDSKITWQRPTVDSPWLDLAVSAAR--LEQYEDRIVWQLRSAETPRSMPALVKALASGTASVLAIWINVN-PEDVKTRSGAKQG---FSSVAKFFGLWHEGQRALYRGLHEFWWGKKHVFLLN 443
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8377.19746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNF6_9PHAE7.710e-14292.45GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LRW8_ECTSI6.930e-7959.43Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A6S8E5K5_9STRA1.240e-4943.33Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3XJJ4_HETAK2.200e-4850.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3H8D0_9STRA3.880e-4837.16Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9U447_9STRA8.190e-4239.39Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2DMU5_9STRA1.460e-4141.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812U012_9DINO1.530e-3836.24POMGNT1 protein n=1 Tax=Symbiodinium natans TaxID=... [more]
A0A812K4I4_9DINO3.960e-3835.78GNTI protein (Fragment) n=1 Tax=Symbiodinium necro... [more]
A0A813CNS4_9DINO1.950e-3736.24RPS13 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8377contigEcto-sp13_S_contig8377:49..5822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score250.0
Seed ortholog evalue1e-63
Seed eggNOG ortholog2880.D8LRW8
Preferred nameMGAT1
Model size636
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons6
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
EC2.4.1.101
Cds size636
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8377.19746.1prot_Ecto-sp13_S_contig8377.19746.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8377 49..5822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464108.1908805-CDS-Ecto-sp13_S_contig8377:48..1321681464108.1908805-CDS-Ecto-sp13_S_contig8377:48..132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8377 49..132 +
1681464108.2031567-CDS-Ecto-sp13_S_contig8377:1258..13451681464108.2031567-CDS-Ecto-sp13_S_contig8377:1258..1345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8377 1259..1345 +
1681464108.2166703-CDS-Ecto-sp13_S_contig8377:2242..23851681464108.2166703-CDS-Ecto-sp13_S_contig8377:2242..2385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8377 2243..2385 +
1681464108.2343898-CDS-Ecto-sp13_S_contig8377:4118..42091681464108.2343898-CDS-Ecto-sp13_S_contig8377:4118..4209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8377 4119..4209 +
1681464108.2440608-CDS-Ecto-sp13_S_contig8377:4964..51271681464108.2440608-CDS-Ecto-sp13_S_contig8377:4964..5127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8377 4965..5127 +
1681464108.253718-CDS-Ecto-sp13_S_contig8377:5754..58221681464108.253718-CDS-Ecto-sp13_S_contig8377:5754..5822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8377 5755..5822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8377.19746.1

>prot_Ecto-sp13_S_contig8377.19746.1 ID=prot_Ecto-sp13_S_contig8377.19746.1|Name=mRNA_Ecto-sp13_S_contig8377.19746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
KVSDKAELKRTQYFPGLGWLLTRKLFGELGPKWPREHWDHWLRDPKQHQG
RECIYPEVPRTYHNGVRGTFMDQAMHDRLFKNIWYNQDASFSWKSAQAGG
GGGGSPPGYAKSMTENYERRMEARIASARHINNLNDLPTSSTPQGNEQVV
MWYTLQQTEEPPARRGAKPKPPPFKPLSDVFGIWHEYRRGEHSGMHSLRY
WNAHVMLINAAK
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mRNA from alignment at Ecto-sp13_S_contig8377:49..5822+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8377.19746.1 ID=mRNA_Ecto-sp13_S_contig8377.19746.1|Name=mRNA_Ecto-sp13_S_contig8377.19746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8377:49..5822+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTTTCGGACAAGGCGGAGCTGAAGCGCACCCAGTACTTCCCGGGCCT
GGGTTGGCTCCTTACCAGAAAACTTTTCGGCGAGGTAAACATGTATCTCA
AGGCGAACGGGGGAGTAGGGGGGGCTCCGTTGAGTTTTGTCAGACCCACC
CCTACCTTGTCTGCGGTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCT
GCTGCTGCTGCTGCTGCTGTTGCCGCTGTCGTCACACAGCAGTCATCGAA
GGCAGAGGTCTCCTCGCCTCGAGCCACCAACCACCACCTCCTGCGTGACC
CACGCCGTAGCCGTATTCCCTCCCTCACGTGTGTCATGTCACTGTTGTAT
CGAGCTTGCTCCTGTCTAGAAATATTAATTTTCCTTTGTCGCCTGCATCA
AGCTTGCTTTTGTTGTGTGTTTTTTGGCATATGGTGAATTGAGTGAGTGC
CTGGGTGAGTTTTGTGGGTTGTTCCTTGCTCTTGTTCTGAGGGACGTCGC
GTCTTGAATGTCCTGACGGTTTTCCAGCGGCGAGGGAGGAATCAAATCGC
CTGCAGAGGGGAAAGTATTCGTGTGACGGAATCGTACCTGACGTGATTAT
TGAGATGACCTTTTTAAAATTGTCATCACTTATGCCAACTCTTATCGAAG
ATTTATTTTTATTTCTTTCATCACTTTTGGATGGTTGCTTAATTTCAAAT
GATTATGAAACAAGAAAGCAGCTACTAGTTAGGTGATCCACGGTAAGGCC
ACCGTAGGGTTAGGCGATGCTGCTGCTGTGCTTTGGTATAACCACTTTCA
CGTGTAGGCGCCCCCTCTCTGGCGCGGCTTGTGTGCGCTGACACGCACGC
TGCAGTGTCAAGCTCAACTAAATAGCGTTATTCCGGTGAACAAACTGTTC
CTGCTCTCGTGTGTGTGTGTTTGTTTGTTTGTCCCACTGCTATGGCTTCA
CGGTGTGGTGTCTAGCTCAACTGGCTCAACTGTCTATTTTCGGGGTAAAA
TAACTGATGTCCCTGCTTTCGTGTATGTGCATGAGTTTTTCTTTGTGCTT
GTCCTCCTCTCAGCTTGGACCCTGCAACAATCGATGTTCCTGCTCTCGCA
CGTGTTCACATGTTTTGTTTTTTCTCGACCTTCTCCCAGCTTGCAATACC
TGATGTTCCTGCTCTCCGGTGTGTGCATGTGTGTTTTTTGTTTCTTTGCC
CTCCCCCCAGCTTGGACCCAAGTGGCCGCGCGAGCACTGGGACCATTGGT
TGAGAGATCCCAAGCAGCACCAGGGGAGGGAGTGCATCTACCCCGAGGTA
AGCTCGAAGGAGGCGTTGTTTCCCGCATCGAACAACATATTTTTTCACGA
AGATCAAGAAAAAGCTGTTTTTTCGTCGCGGTGGCCCGGCAGATTCGATC
GTTTGTTTGATCTTTGTTTTGAGCTCACGTTGTTGTTTTTCGTCTTCTTC
TCCTTCTTTTTCATTTTACGTGTGCAGTAGATGGGCGTGAGAGGGGCCGG
CCGCCGTATTTAGCGTGCTGGTTTTGTAACCCTCTCGCACCTTCGCACCT
GGGATGCGTGTGTACATCGTGTGTCGGCCGTTTGGCTTGGCGGTGCGGGT
GCCATTCGTTGGTGATGGCAACTCGGCCCGTCGTCTGCATGGCGCAGGAA
CGTGAAAATGTATGCAGAGTCGATTGTTGGTGATGGTCGCGGTGCTGCGT
TTGGCTTTTGTGTTGTTTCCTTGACGTCGAAGCACTTTTGACTGCTGGCC
CCTGGTTTCATGGCCGTGTGGCTGGTCCAGCAGTTGAGTGAGCGATTCTC
CGCGTGAGGCTTGACACTCGCAGGAAAACTTCAAATGCAAGGCTCGTTCC
GTAACCAAACACCAAAGCAAGCAAGGCATATGCTATGCTGTACGATGATT
TTGATTTTCGCCCGAAACTTCGACGAAACTCACTCTCCTCGTGTAAAGTA
TTCCTCCCCGCCCCACCCCTCTTCTTTGCTGTTTTCAGGGCGTGCCTCTC
GTCTAGGACCCAGCCTGTTTCGCACGGAATATTGCACGAGTTTTTGATCA
AAAATCTCTCTTCTCTTGTCTCATCTTGTCTTTTGTGGTGGTGTTCTTGT
TTGCTCTCTATCGTTGTTCCCTCGTCGTTTCCGGCTGGACTTGGGGTGCG
GTGATTGTGGTGTGGAACGCGCGCGGAAATTTGCCGCGGAGAAGGTTCCG
CGAACGTACCACAACGGTGTCCGGGGCACGTTCATGGACCAAGCCATGCA
CGACCGGCTGTTCAAGAACATCTGGTACAACCAAGACGCCTCGTTCTCTT
GGAAATCCGCCCAGGCCGGGGGCGGGGGAGGAGGAAGGTGCGGCGGTACG
AGTGGCGCCGCCGTTGCTGCGGTGTTTGACCGCGGGCGGTCCGAGCAGCA
GATCTGGGCGTGTGTGCCAAATAACGCGCTCGATGTCGCTGCTGCTCCAT
GATCATGCCGTCTGTACTCTTTAATACCATCATCAACGTTTTTTTCACTG
CGAGCCGGAAATCACGTCGTTTTTTTCGAAATATAGTTCGCCTAGGAAGC
CGCCGACGAGTGTGTCTCCGAGCAGAGGTTCATTTGCCTAACGGAGTTTT
TTTAGTTTAGAGTGCTGTGTCCCGCGTTTCAGTTCTCTTCCTCCTGCCGC
TGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCCGATGTAT
TGTCGGCTTCACGATGCTAGCGCTGCCGCCGCCGCCGCCGCCGCCAACCA
AGGGAACTAAAATTTTTTGTTTGATTTTTTTATCGATGATTGCAATGTTT
GCGCAGGAGGGAGTTCGTGAAGTGGTATTGAGTGACGACAGAATTCCAGT
TGGTCAAGAAGGAGTTGACGTGGAAGAGTTTGCGTAGAATACACCCGCCT
GAGACGGTAGAAAAGGCAATCACGGCGTGGAACTTGATCATCACGACGAC
TACTTACATGGCTGTCCCGACTCAGATCATCGTTGAATGTAGCCCTAGTG
GGGGTCGGAGACTCTTTCTAGCCTACTACGAACCCCAGGCGAGAGCTGAA
AAGACAAGATTGACATCGGAGTACCATGCAATAAAGATGAAAGTAGGGGA
AACTCCGCCAGAGTACTTTGGCAGATTTGCTGTTTTGCGCAGTAGGCTAG
CCTCACACGGCGTCACGTACGTAGACGATGATGCCAACTTGCACGTTGTA
TACAATCTCTCTTCCGCAGCATGGACTTCTCCATCTTGTATTCGAAAGAG
ATATTGTATACAACGTGCAAGTTGGCATCATCGTCTACGTACGTGACGCC
GTGTGAGGCTAGCCTACTGCGCAAAACAGCAAATCTGTCAAAGTACTCTG
GCGGAGTTTCCCCTACTTTCATCTTTATTGCATGGTACTCCGATGTCAAT
CTTATCTTTTCGGCTCTCGCCTGTGGTTCGTAGTAGGCTAGAAAGAGTCT
CCAACTCCCACTAGGGCTACCGTCAGCGATGATCTGAGTCGGGACAGCCA
TGTTAGTAGTCGTCGTGATGATCAAGTTCCACGCCGTGATTGCCTTTTCT
ACCGTCTCAGGCGAGTTCATCCCACGCAAACTCCTCCACGTCAACTCCTT
CTTGACCAACTGGAATTCTGTCGTCACTCAATACCACTTCACGGACACCT
TCCTGCGCAAACATTGCAATCATGTTCGATCGAAAAATCAAAAACCTCTG
CCTCCTCCCTGCTCATCATCCTCCATTCTTGATTAACATCATCATGAACG
CTTTTTTCACTGTGAGCCGGAAGTCATGTTTTTTTCGAAATTTCGCTTGG
CCTGGGAAGCCGCCGACGAGTCTGTGTCCGAGAAGAGGCTCATTGGCCTC
ACGAAATTTCTTCCGTTTAGAGTGCTGTGTCCCGCGTTTCAGTCCTCTTC
CTCCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCC
GACGTGTTGTCGGCTTCACGATGCTACCGCCGCCGCCGCTGCCGTCGCCG
CCGCCTCCACCGTGGGCTTGTGACCAATCACATCCACGCATCATCGGCGC
ATCGGCCCCGGGGGCAGCAGCCCGCCGGGCTATGCAAAGAGCATGACGGA
GAACTACGAGCGAAGGATGGAGGCTCGAATAGCAAGTGCCCGACATATCA
ACAACCTCAATGTGAGGAACGGGAAGATATAGAATGAGTATTGCCCCAGA
GACCTACGAGATGAGAAGAGAGTTGTGGAGAGATATTTAGAGATACGGAA
AAGGTGCAAGGAGAGAGGAGGAAAAAAGACTTGAGACAGAGAAAGAGAGA
CGGAGAGAGAGGCAATGACAGAGATGACAGGAGAAGGGGGCAGAAAAAAA
GAGAGGTATGAAGCCAAGCCGAACGGAAGAGAAAGCAAGGGCATTTTTCG
TTGACGACACACCGACGCGGGTTGAGACAGCTGTAAATTGCCCAGCTGCT
TGTCTGAGAGACAGACCAAGGTACCAATGGTACAAACCACTTCCTTGGTA
CCGCTGTAGCAGCCTCAGTCACGAACGCGTCTGCCTGCAGGCCCCTACTT
GGTTGCGACAAACGTAGGGAAGGGAGGGGGGGAGGGTCGACTGCTTGCAA
CGGTCTCCACCCTCCTCGTCCCCCCTTTTCTTTGTATGACTTGTGTGAAG
ACTTTTCGCGTTGTGTTGTTTTTGGTCGTACGGCTTCGAAGGGTTGGTGA
CACCTTGTCTAACGACTGTGGCATGCATGGATTTGTGTACACCCCCTCCC
ACCCACCCCCATCCCCATCCCCCTCCCCGATGCGCCGTCCTCTCGAGGGC
GCGTGGTCAATGGTTTCACCGCTAAGGCATGAAAAATGTAAGAGTACCCC
CCCCCCCCCTTCGGCGCCCCCCCCCATCGGCGCCCCCGGCCCCTTGCTGC
TGTGTTAACTGTGCAGGATCTGCCTACCTCATCGACACCGCAAGGGAACG
AGCAGGTGGTGATGTGGTACACCCTGCAGCAGACGGAGGAGCCGCCTGCC
CGGAGAGGGGCGAAGCCCAAGCCTCCCCCCTTCAAGCCTCTCTCCGATGT
CTTCGGGATCTGGCACGAGTATCGGAGGGGTGAGAGAGAGGAGAGGAGGG
GAGGGCTACTGCTGTAGGGGAGAAGATGTGCCATCAGCGAAAATGAATGG
ATGAATGTGGAGATGAACCAGAGAAGACACATTATTGTCAAACTGTCCTT
TTCAATGGGTTTCAGAATTGGATAGCCAGGTGTACCGTGGGTTGCGTAAC
ATGTCACACCCCCAGGACAGATTTTCGAAGCTCGATCACTCGGCAGGAAA
GGCGGTGACGGTGCCGAAAAATGGCGGGAGGCGTTGGGAGCGTCTCGTCG
AGAGCTTTCCGAAAACGTATCCTTTGGTTTTTACTTGTATTCGGAGAATA
TACACACCGCTGTACCTCGTTTCTATTCTCTCTTGGACCTGTGATAGCAT
ACGATGGCATACGATGCTCCTTTTGATTTTTGTTTTTCCACACGCCGTTT
TTATCACACAGATTGGAAGCGTGGGTGGGTCCGTTTGTTGCCCCCGTTTT
CGTTCTATTTTATGATGTCCTACTGTTTTGTCTATCTCTATTCCCTCTTG
TATCGCCAGTCTCTCGATCGACCGGCGTCGTGCTCCGAAATCGCTCTTGC
TTGTTGGTATATTTAGTCGTGCCTCCTCCTCCCGTGTATGTTTGTGTGCA
CACCAGGCGAGCACTCTGGGATGCACAGCCTCCGGTATTGGAACGCGCAC
GTTATGCTCATCAACGCTGCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8377:49..5822+

>mRNA_Ecto-sp13_S_contig8377.19746.1 ID=mRNA_Ecto-sp13_S_contig8377.19746.1|Name=mRNA_Ecto-sp13_S_contig8377.19746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8377:49..5822+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTTTCGGACAAGGCGGAGCTGAAGCGCACCCAGTACTTCCCGGGCCT
GGGTTGGCTCCTTACCAGAAAACTTTTCGGCGAGCTTGGACCCAAGTGGC
CGCGCGAGCACTGGGACCATTGGTTGAGAGATCCCAAGCAGCACCAGGGG
AGGGAGTGCATCTACCCCGAGGTTCCGCGAACGTACCACAACGGTGTCCG
GGGCACGTTCATGGACCAAGCCATGCACGACCGGCTGTTCAAGAACATCT
GGTACAACCAAGACGCCTCGTTCTCTTGGAAATCCGCCCAGGCCGGGGGC
GGGGGAGGAGGAAGCCCGCCGGGCTATGCAAAGAGCATGACGGAGAACTA
CGAGCGAAGGATGGAGGCTCGAATAGCAAGTGCCCGACATATCAACAACC
TCAATGATCTGCCTACCTCATCGACACCGCAAGGGAACGAGCAGGTGGTG
ATGTGGTACACCCTGCAGCAGACGGAGGAGCCGCCTGCCCGGAGAGGGGC
GAAGCCCAAGCCTCCCCCCTTCAAGCCTCTCTCCGATGTCTTCGGGATCT
GGCACGAGTATCGGAGGGGCGAGCACTCTGGGATGCACAGCCTCCGGTAT
TGGAACGCGCACGTTATGCTCATCAACGCTGCCAAG
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