mRNA_Ecto-sp13_S_contig83731.19740.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83731.19740.1
Unique NamemRNA_Ecto-sp13_S_contig83731.19740.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83731.19740.1 vs. uniprot
Match: UPI001872F083 (type I secretion C-terminal target domain-containing protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001872F083)

HSP 1 Score: 124 bits (312), Expect = 1.890e-30
Identity = 91/129 (70.54%), Postives = 101/129 (78.29%), Query Frame = 1 
Query:    1 GAGNDSIMAQAXXXXXXXXXXXXXXXXXXXXXXVQHELAEETPGATGNHYDGGRGTDTLRLFLTTAEAEDAGISAAVASLQSFIAANSDPASLSGSGLLGSFAALGLEVRNFEDLEIFIDGVQQGPTAD 387
            GAGNDS+M   XXXXXXXXXXXXXXXXXXXXX V H L+EET GA GNHYDGG GTD L L LT AEA +A I+ AV  L +FI ANSDP+S+SGSG LG+F  LGLEVRNFEDLE+ +DGV   P AD
Sbjct: 3396 GAGNDSVMXXXXXXXXXXXXXXXXXXXXXXXXLVVHTLSEETTGAAGNHYDGGHGTDKLVLNLTAAEAANATIAQAVQDLAAFIGANSDPSSISGSGALGAFTTLGLEVRNFEDLEVLVDGVPISPNAD 3524
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BLAST of mRNA_Ecto-sp13_S_contig83731.19740.1 vs. uniprot
Match: A0A7X2KG62_9PROT (DUF642 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KG62_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 1.600e-10
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:  130 GATGNHYDGGRGTDTLRLFLTTAEAEDAGISAAVASLQSFIAANSDPASLSGSGLLGSFAALGLEVRNFEDLEIFIDGVQQ 372
            GATG  YDGG G+DT R+ L+  +A+D  +   + S + F+ AN D    +G G L +F+ LG+ VRN+E+LE+++DG  Q
Sbjct: 2438 GATGGLYDGGAGSDTFRIELSGDQADDDAVLTELRSFREFMEANDDENRDTGQGSLFTFSTLGVSVRNWEELEVYVDGQAQ 2518
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BLAST of mRNA_Ecto-sp13_S_contig83731.19740.1 vs. uniprot
Match: A0A6B2NM53_9RHOB (Tandem-95 repeat protein n=1 Tax=Ruegeria sp. PrR005 TaxID=2706882 RepID=A0A6B2NM53_9RHOB)

HSP 1 Score: 61.6 bits (148), Expect = 2.170e-8
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  142 NHYDGGRGTDTLRLFLTTAEAEDAGISAAVASLQSFIAANSDPASLSGSGLLGSFAALGLEVRNFEDLEIFIDGVQQGPTADIVLTTD 405
            ++Y GG G DTL L +T ++     +   +A+  +F+AAN+DP +   +G    FAA GL  R FED+ +F+DGV+  P  D V   D
Sbjct:  136 DYYAGGSGIDTLTLTMTLSDWFRIEVQNDIAAFLNFVAANTDPLTGEANGQGFDFAAFGLTAREFEDMRVFVDGVELSPEDDPVTAND 223
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BLAST of mRNA_Ecto-sp13_S_contig83731.19740.1 vs. uniprot
Match: A0A8E1WXL7_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=A0A8E1WXL7_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 4.420e-6
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  106 HELAEETPGATGNHYDGGRGTDTLRLFLTTAEAEDAGISAAVASLQSFIAANSDPASLSGSGLLGSFAALGLEVRNFEDLEIFIDG 363
            + LAE T     N+YDGG G DTLRL LT AEA  A I A +A+ + F+A     A ++ + +   F++  L VRN+E LE+ ++G
Sbjct:   87 YRLAENT--GYSNYYDGGTGNDTLRLVLTRAEANSAEILADLAAFEEFLA-QGQQADVASNDVF-HFSSFDLTVRNWERLEVVVEG 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83731.19740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001872F0831.890e-3070.54type I secretion C-terminal target domain-containi... [more]
A0A7X2KG62_9PROT1.600e-1043.21DUF642 domain-containing protein n=1 Tax=Alphaprot... [more]
A0A6B2NM53_9RHOB2.170e-838.64Tandem-95 repeat protein n=1 Tax=Ruegeria sp. PrR0... [more]
A0A8E1WXL7_9PROT4.420e-641.86Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83731contigEcto-sp13_S_contig83731:167..571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464107.623584-UTR-Ecto-sp13_S_contig83731:166..1871681464107.623584-UTR-Ecto-sp13_S_contig83731:166..187Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig83731 167..187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464107.642478-CDS-Ecto-sp13_S_contig83731:187..5711681464107.642478-CDS-Ecto-sp13_S_contig83731:187..571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83731 188..571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83731.19740.1prot_Ecto-sp13_S_contig83731.19740.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83731 188..571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83731.19740.1

>prot_Ecto-sp13_S_contig83731.19740.1 ID=prot_Ecto-sp13_S_contig83731.19740.1|Name=mRNA_Ecto-sp13_S_contig83731.19740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MAQAGDDTVIGEAGDDVIYGGDGDDVVQHELAEETPGATGNHYDGGRGTD
TLRLFLTTAEAEDAGISAAVASLQSFIAANSDPASLSGSGLLGSFAALGL
EVRNFEDLEIFIDGVQQGPTADIVLTTD
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mRNA from alignment at Ecto-sp13_S_contig83731:167..571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83731.19740.1 ID=mRNA_Ecto-sp13_S_contig83731.19740.1|Name=mRNA_Ecto-sp13_S_contig83731.19740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83731:167..571+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCCGGCAACGACAGTATCATGGCCCAGGCCGGCGACGACACCGTGAT
CGGCGAGGCCGGTGACGATGTGATCTACGGCGGTGACGGTGACGATGTGG
TGCAGCACGAGCTCGCGGAGGAAACCCCCGGGGCGACCGGCAACCACTAT
GACGGCGGCCGCGGCACCGACACGCTGCGGCTCTTCCTGACCACCGCGGA
AGCAGAGGATGCCGGGATCTCGGCAGCCGTGGCCAGCCTGCAGAGCTTTA
TCGCGGCGAACAGCGATCCGGCTTCGCTGAGCGGCAGCGGCCTGCTCGGC
AGCTTCGCCGCCCTCGGCCTTGAGGTGCGCAACTTCGAGGATTTGGAAAT
CTTCATTGATGGTGTCCAACAGGGCCCGACGGCGGATATCGTGCTGACCA
CCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83731:167..571+

>mRNA_Ecto-sp13_S_contig83731.19740.1 ID=mRNA_Ecto-sp13_S_contig83731.19740.1|Name=mRNA_Ecto-sp13_S_contig83731.19740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83731:167..571+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCAGGCCGGCGACGACACCGTGATCGGCGAGGCCGGTGACGATGT
GATCTACGGCGGTGACGGTGACGATGTGGTGCAGCACGAGCTCGCGGAGG
AAACCCCCGGGGCGACCGGCAACCACTATGACGGCGGCCGCGGCACCGAC
ACGCTGCGGCTCTTCCTGACCACCGCGGAAGCAGAGGATGCCGGGATCTC
GGCAGCCGTGGCCAGCCTGCAGAGCTTTATCGCGGCGAACAGCGATCCGG
CTTCGCTGAGCGGCAGCGGCCTGCTCGGCAGCTTCGCCGCCCTCGGCCTT
GAGGTGCGCAACTTCGAGGATTTGGAAATCTTCATTGATGGTGTCCAACA
GGGCCCGACGGCGGATATCGTGCTGACCACCGAC
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