mRNA_Ecto-sp13_S_contig8373.19739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8373.19739.1
Unique NamemRNA_Ecto-sp13_S_contig8373.19739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8373.19739.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.770e-62
Identity = 113/132 (85.61%), Postives = 123/132 (93.18%), Query Frame = 3 
Query:   66 EVKILNKKVMKPGPDSDRFVPNEGGLALKQRQAVTETADDFLARAQERAPSAGNDVVTLGKVAEAVELLKEVHSQYDELHREHDAKLSRFQRAVDRITRKLAAVSDDLVPQDELRDMLALHDELLRDRSADN 461
            +VKILNKKVMK GPDSD  VP+ GGLALKQRQAVTET DDFL RAQERAP+A NDVVTLG++AEAVELLK+ HSQY+ELHREHDAKL RFQRAVDRITRKLAAVSDDLVPQDELR++LALHDELLR+RSADN
Sbjct:  260 QVKILNKKVMKIGPDSDSLVPSGGGLALKQRQAVTETVDDFLERAQERAPAADNDVVTLGQLAEAVELLKDEHSQYNELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADN 391
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8373.19739.1 vs. uniprot
Match: A0A6H5K7G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G3_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 9.220e-61
Identity = 111/131 (84.73%), Postives = 120/131 (91.60%), Query Frame = 3 
Query:   72 KILNKKVMKPGPDSDRFVPNEGGLALKQRQAV-TETADDFLARAQERAPSAGNDVVTLGKVAEAVELLKEVHSQYDELHREHDAKLSRFQRAVDRITRKLAAVSDDLVPQDELRDMLALHDELLRDRSADN 461
            KI+NK V K GPDSD  VP+ GGLALKQRQAV TET DDFL RAQERAP+AGNDVVTLG++AEAVE LKEVHS+YDELHREHDAKL RFQRAVDRITRKLAAVS+DLVPQDELR+MLALHDELLR+RSADN
Sbjct:  147 KIVNKMVAKTGPDSDSLVPSGGGLALKQRQAVVTETVDDFLERAQERAPAAGNDVVTLGQLAEAVEPLKEVHSKYDELHREHDAKLGRFQRAVDRITRKLAAVSNDLVPQDELREMLALHDELLRERSADN 277
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8373.19739.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 4.110e-54
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 3 
Query:   75 ILNKKVMKPGPDSDRFVPNEGGLALKQRQAVTETA-DDFLARAQERAPSAGNDVVTLGKVAEAVELLKEVHSQYDELHREHDAKLSRFQRAVDRITRKLAAVSDDLVPQDELRDMLALHDELLRDRSADN 461
            ILNKKVMKPGPDSD  V + GGLALKQRQAVTETA DDFL RAQERAP+AGNDVVTLG++AEAVELLKEVHS+ DELHREHDAKL+RFQ AVDRITRKLAAVS+DLVPQ+ELR++LALHDELLR+RSA N
Sbjct:  831 ILNKKVMKPGPDSDSLVASGGGLALKQRQAVTETALDDFLERAQERAPAAGNDVVTLGQLAEAVELLKEVHSKNDELHREHDAKLTRFQGAVDRITRKLAAVSNDLVPQNELREILALHDELLRERSAIN 960
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8373.19739.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 7.000e-50
Identity = 106/131 (80.92%), Postives = 116/131 (88.55%), Query Frame = 3 
Query:   72 KILNKKVMKPGPDSDRFVPNEGGLALKQRQAVTETA-DDFLARAQERAPSAGNDVVTLGKVAEAVELLKEVHSQYDELHREHDAKLSRFQRAVDRITRKLAAVSDDLVPQDELRDMLALHDELLRDRSADN 461
            KILNKKVMKPGPDSD  V +    ALKQRQAVTETA DDFL RAQERAP+AGNDVVTLG++ EAVELLKEVHS+YDELHREHDAKLSRFQRAVDRITRK    S+DLVPQ+ELR++LALHDELLR+RSA N
Sbjct:  857 KILNKKVMKPGPDSDSLVAS----ALKQRQAVTETAVDDFLERAQERAPAAGNDVVTLGQLTEAVELLKEVHSKYDELHREHDAKLSRFQRAVDRITRKCTLESNDLVPQNELREILALHDELLRERSAIN 983
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8373.19739.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 2.240e-47
Identity = 99/131 (75.57%), Postives = 111/131 (84.73%), Query Frame = 3 
Query:   69 VKILNKKVMKPGPDSDRFVPNEGGLALKQRQAVTETADDFLARAQERAPSAGNDVVTLGKVAEAVELLKEVHSQYDELHREHDAKLSRFQRAVDRITRKLAAVSDDLVPQDELRDMLALHDELLRDRSADN 461
            VKILNK VMKPGPDSD  VP+ GG AL+QRQAVTE  DDFL R+QERAP+AGNDVVTLG++AEAVELLKEV S++DELHREHDA LSR QRAV +ITRK   +SD LVPQDELR+ LALHDELLR+  A N
Sbjct: 1062 VKILNKMVMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERSQERAPAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDATLSRVQRAVCKITRKSETMSDGLVPQDELRETLALHDELLRELGAKN 1192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8373.19739.1 vs. uniprot
Match: A0A6H5JHX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.710e-17
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 3 
Query:  210 APSAGNDVVTLGKVAEAVELLKEVHSQYDELHREHDAKLSRFQRAVDRITRKLAAVS 380
            AP+A NDVVTLG+VAEAVELLKEVH +YDELHREHDAKLSRFQR +D+I RK  + S
Sbjct:   15 APAASNDVVTLGQVAEAVELLKEVHCKYDELHREHDAKLSRFQRTIDKIGRKCTSES 71
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8373.19739.1 vs. uniprot
Match: A0A6H5JP57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP57_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.720e-14
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 3 
Query:   66 EVKILNKKVMKPGPDSDRFVPNEGGLALKQRQAVTETADDFLARAQERAP----SAGNDVVTLGKV 251
            +VKILNKKVMK GPDSD  VP+ GGLALKQRQAVTET DDFL RAQER        G +V TLG +
Sbjct:  137 QVKILNKKVMKTGPDSDSLVPSGGGLALKQRQAVTETVDDFLERAQERGKFPLLCTGLEVATLGVI 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8373.19739.1 vs. uniprot
Match: A0A6H5JGW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.780e-11
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 3 
Query:   63 SEVKILNKKVMKPGPDSDRFVPNEGGLALKQRQAVTETADDFLARAQER 209
            S+VKIL+KKVMKP PDSD FVP+ G   LKQRQAVTE  DDFL RAQER
Sbjct:  127 SKVKILHKKVMKPEPDSDSFVPSGGRQTLKQRQAVTERVDDFLERAQER 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8373.19739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KC16_9PHAE1.770e-6285.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7G3_9PHAE9.220e-6184.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA2_ECTSI4.110e-5484.62Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI7.000e-5080.92Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA0_ECTSI2.240e-4775.57Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JHX7_9PHAE1.710e-1777.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP57_9PHAE1.720e-1468.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGW4_9PHAE3.780e-1175.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8373contigEcto-sp13_S_contig8373:530..5461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score197.2
Seed ortholog evalue4.5e-48
Seed eggNOG ortholog2880.D7FUA2
Model size1205
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons6
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size375
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8373.19739.1prot_Ecto-sp13_S_contig8373.19739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8373 856..3675 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464107.498552-UTR-Ecto-sp13_S_contig8373:529..5971681464107.498552-UTR-Ecto-sp13_S_contig8373:529..597Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8373 530..597 +
1681464107.5109603-UTR-Ecto-sp13_S_contig8373:831..8551681464107.5109603-UTR-Ecto-sp13_S_contig8373:831..855Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8373 832..855 +
1681464107.579908-UTR-Ecto-sp13_S_contig8373:3675..37101681464107.579908-UTR-Ecto-sp13_S_contig8373:3675..3710Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8373 3676..3710 +
1681464107.5908895-UTR-Ecto-sp13_S_contig8373:4758..54611681464107.5908895-UTR-Ecto-sp13_S_contig8373:4758..5461Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8373 4759..5461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464107.5217237-CDS-Ecto-sp13_S_contig8373:855..8951681464107.5217237-CDS-Ecto-sp13_S_contig8373:855..895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8373 856..895 +
1681464107.5326197-CDS-Ecto-sp13_S_contig8373:1761..18391681464107.5326197-CDS-Ecto-sp13_S_contig8373:1761..1839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8373 1762..1839 +
1681464107.5513365-CDS-Ecto-sp13_S_contig8373:2735..28911681464107.5513365-CDS-Ecto-sp13_S_contig8373:2735..2891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8373 2736..2891 +
1681464107.5682292-CDS-Ecto-sp13_S_contig8373:3574..36751681464107.5682292-CDS-Ecto-sp13_S_contig8373:3574..3675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8373 3575..3675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8373.19739.1

>prot_Ecto-sp13_S_contig8373.19739.1 ID=prot_Ecto-sp13_S_contig8373.19739.1|Name=mRNA_Ecto-sp13_S_contig8373.19739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MKPGPDSDRFVPNEGGLALKQRQAVTETADDFLARAQERAPSAGNDVVTL
GKVAEAVELLKEVHSQYDELHREHDAKLSRFQRAVDRITRKLAAVSDDLV
PQDELRDMLALHDELLRDRSADNS*
back to top

mRNA from alignment at Ecto-sp13_S_contig8373:530..5461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8373.19739.1 ID=mRNA_Ecto-sp13_S_contig8373.19739.1|Name=mRNA_Ecto-sp13_S_contig8373.19739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8373:530..5461+ (Ectocarpus species13 EcNAP12_S_4_19m)
TAAAGAACACCACGCTAGAAGACGGTCTGGAAGCGGCAACTGCAAAAAAC
GCCAAGCTGGAGTCTGAGGTACGGTGACTGTGCTCTACAGTATTCAGTGG
TTCAGAAACCTCTCTTTCATCATCATTTACCAGTCTTTTTATTGCCGAAA
GGCTCACTATCAAATATGCACATGGTCGTTGAGTACGTCCACCGTCGTGG
AACAGAACTGCGTGATGGGCTATCACAACCGGGTCGACTGTCACCGGCAG
ATGTCTGCGTTCACCACCAGCATGCAATTATGCCGCCGCGATTGGTTTCC
AGGTGAAAATCCTGAACAAGAAAGTGATGAAGCCTGGGCCTGACTCGGAT
AGATTTGTGCCCAACGGTAAGTGCCATTGCCAGCTGAGCTACGTTGTGCG
TTTTTCCCCTTGGGTGCAGAAGCTCCTTTTTTGCAGATTGAGCAAGGCCG
ACTCACTCTCGTCTAGAATCCCGCATCACCCACACATGATAATAGTTCCG
TATCAACAGGTACCTGTAGACCACCCGACCTTTCATCATTGCCAACGAGA
ACGTCATCGGCGATGGTTAGATACTGTTTCACTGGTAGCATCCTCACCGC
CACGAAACTCAGCGTTAAATACCGGCAAATCAAAGTGTACGGGTGGCATC
CTCTGTGGAAATTCTCTGGACGTTAGCGCAAGAGAAACTGAGTCCTCATT
GATCTTACCCACTTAGCGGGTATATTTACCCTTAAGTAGAAGAACGTTAC
AATGGTGGTCCTCGTGCCATTGCGGATCACCTAGAGCAAGTTTGGTGTTG
GAGAGTGCCATTGTCGAAACATTTTCGCCGTGCTTGGGGCGATGGAACCG
CCGGAACATGCGATGACACTCTCTTTGCTCAGATCTCGATCTTGTGGTGC
ATGACTAATTTTGCCATAATTTAGTAGCGCTGTCGTCTGGGCGTGCCGCG
TGACCTCACCGTTTGCCTGTCAAAGCCGGCCCGGGGGGCCGACGGTGTCA
GCACATAAAACCCACGGCTGTACGCCTTTTCGCATGGCTGTATGCCTGTT
GGATTTCATCTGATTGCGTCCTTTTCTGTGGAAATCATCTGCTTGTTTTC
TCGTGGTGCTGGTAGTCGAATGTGATCTACAATGAATCCTCGTCTTACGC
CATCATTCAATACGTACACGAACCTTCTGTAATGCTGACGCACGTCATGT
CATATTCGGGTGCAATCCACGACCATCGACAGAGGGGGGGCTAGCTTTGA
AGCAGCGGCAAGCTGTCACCGAGACAGCGGATGATTTTCTCGCAAGGGCT
CAAGAGAGAGGTAAACCCCCAATCTCCTGGACGGGGCTCGAGGTGGCGAC
CCTTTCACGTTGTTCTGCGCCGGCAGTCTGTGGTGGCTTTGAGTCGAAGC
ACTAATTCCTGAAGGAGCGTTTGTTTGTTGTCCAGACGAGACCAAGTGAA
CGAGGAAAGTATCTCCCCGTTGCTTTGGAAGAGCAAACGTCGGACTTGCA
CGGACATTTCGTGCATGGATGCGTTCGCGTCTGAGTGAAGATCCATTCGC
CTCAAGCGCAACTGACGTCGAATCCTGATCTCATCGAATGTTCGGTAGAG
GCGTTGCCGTGTTTCGCCAGCCTTCTCCCCTGATATTGGATAGTACCCTC
ATGCGCGAGCATTCATTAGTTCGATTGTTCTGTTTTGCATGGCTCCTTGT
GTTCGGTCCAGACCCGACCAAGTGAACAGGGAAAATATCTACCCGTTGCT
TTGGAAGGGTAAACGTCGGACTTGCACGGACATTTCGTGCTTCGATGCGT
TCGTGTCTAAGTGAAGATCCGTTCGCCTCACCGCAACTGACGTCTAGCCC
TGATCTCATCAAATGCTTGGTTCAGGCTTTGTCGTGTTTCGCTAGCCCTC
TCCCCTCGTATCGGATAGTGCCCTTATGCTCGAGCATATCGGATAGTGCC
CTTATGCACGAGCATTCAGTAGTTTGATTGCTCTGTTTTGCATAATTCCC
TCTCACGTGGAAAGCTTCGCCGGTGAAAACGCGTCCTACCCACTTACCTG
GTTGGAATTTACTTTGCCCCGCCCATTTCACCAAACACGCTCTCCTCGTC
ACGCGTCCGCAAATTGAGACGCTCATGGCAAAGACATCAATGTCGCCCTC
TTGCTTGCTCCGTTGGCTGCGTCTGCCTATTCGACGGGGTGTTGTTTGTA
CATCAGCACCGTCGGCGGGCAATGATGTGGTGACCTTGGGGAAGGTGGCG
GAGGCCGTGGAACTCCTGAAGGAAGTGCATAGCCAGTACGATGAGCTGCA
TCGCGAGCATGACGCCAAGCTGAGCCGTTTTCAGAGGGCGGTTGACAGGA
TCACCCGCAAATGTACGTCAGAATCGGGTTCACGACCACTTGATATGCGT
CACTTTCTAGAGTCATGGAGAACAAATGAAGTCAGCATTCGCATGCTTTC
ATTTGGGCCTCGCCTCGTGAGCAACTACGGGTAAAAGTCGTTCCACGGGC
TTTCCGCTATCTCTTGCATGCAGAGTAAATATGCTCCGCTGCTGTCGTGG
CTTCGCGGCAAGACAAACGTTGATTTCAAGCTCGGTATGTTCAAGGTTCA
TGTCATATTGGGCCCGGCCTCTCTCCATTGCGCAATTTTGTCATTCACAA
ACGTATTATCGGCGCGCTAACCGGGCCGCGTGGAATCATCGTCTCTGATG
GGTTTCGAACATGGTTCTCGAACGGATGTCGTAGTTTGACTTAGTTGGTG
AACAATGATCACCATGACCAGTCGAAGTGTTTTCTGTGTGTCGTTGTGGT
TTGTTTGATGGGTGTTTGGTCATCCCGGCGAGCTTGGCGTTCACTTTTGT
CCCCAAACGCTTGGTGCCGTTTTTGTGTTTTCACGTCGCGATATCCAACC
TGTTCTGGCTTAATTGACAACTATGCGGCTGAGCTTTCTCCTTCGCATTT
ACGCTTGAGACTTTTGTGCCACTTAAGTAAATGCGTGCCGTGCGCCCTTT
TTCCTGTTTACGGTTGGGAACGGCGTGGGGCATTACTTGCATCAGTGGCG
GCTGTGAGTGATGACCTGGTGCCCCAGGACGAACTGAGAGATATGTTGGC
ACTTCACGACGAGCTGCTTCGCGATCGTAGTGCTGACAACAGTTAGCTTC
AGAGGATGAGCGTCCACGACAACGAACATATGTGAGTGTCATTCTTGGGG
ATTTGGTTGAGGTTGAATCGATATGGTCGTGGTTGGTAATTTGATAGTCG
AACAGCAGTATCTAAGCTCGAACTTCATCAGAAGTTGTGATGGTAGATTT
CGTTTTTAATTTTGTTGTCACATTGAATCATTGCTCACAGCAGTTATGCT
GGTTAGCTCCAATCCATGGACTTGTCACACAGAGGAGTTCCCCTCCCTGA
GCCCCCCTACCTACCCCGCCTTGGGCGCTTGCGATTTCTGATGCGAGAAG
AGCGTAGCACTCCCTTTCCTCGAAGTGTGGACAAGAATTGTTTTGCTGGA
TGTCACAGGGCTCCACGTCAGAATGTCCAGCGTCAATAGCACGGACGCCA
TCAACTTTGATCGACCTCCATCGAGTTTTATCTGAACGTCTGGGCGACAT
CACCCAACACATTGCATGTGCGGTCAAAGTAAACTAGCGCTTCGATCAAC
GCTGATGAATGCTTGTGCACGTTTTGTTCGTATCGGTGAGCAATCCTTAT
GGCCACTCCCATCGATGCTGATCTGTCACGTTGTACGGTACGGTAGAACA
TCGTGTACCTCTCGTTTGAGGGTTGTTAACACGAAAGTTCTCGTGGCGTT
CGCCTATTATAGTGTCGGCTCGGTCCCACTGTACGAGCAAATCAGCGAAT
AAGAGTACAGGTATCGCGCAGGTCCCTTGGTTGCCGATGTTCTACATGTA
TGCTCTCTTTTTCGCACGCGAGATCGATTGTTTCTCGTACCTGACGCATG
CCCACTACGCGTTTACGTCAGTCATATCATCTCTCGGGCTCAACGGGTTG
AACGAAGACATCGCCTCTTTCGTTGGAGACTTACGCACCGTACGTTGTCG
ACTGCCCAATATGCTTCTTGTGCCTGTACTGCACATGTTGTTTACGCACT
ATGGCAGAACTCTCACGACTTAAACATATTTTTTGCTCCAGACTCTATGC
CGCAAACGGTGTGACTAAAATACGTACACCACTCATAACAATTGTCCACG
GCTACTGCTCCCACTACTGCTTCGTGCAGGGTTCCCTCGTTGTGTCTTCT
TCTACTGGTTCTTCTCTTTCCAGCGTGCCTATGACTCTCCGCATGCAATC
TACCAACCATCGAGCCGTGCATGACCGGAGCTTCGTCCGTTCGGCTGTGC
GTGGATTCCCGACCGGCATCGCGACGAGTATTGATTGTTTGATAGATGCC
GACGTGAAGCCATTGTTTCGTGGTAGACGATACTCTACCTTGAATGGTCA
CCTTGAATCGAGCGCCGAGGACCTTTGGGGGAAAGTTGCAGGTCTCTTGG
CGACGAGGAGGTGAAATTGCCCGAGGAACTTGGTTGTGTTGTCTTGTCGC
GCATACGATTTCTGTGATAAACGACCTGATATTCAACTGCTGTTGTGCCG
AAAGACGGAGTCATGCACACGCCTTGTTGACTACGCATGCATAGCAGAAC
AGTGTTTGTACGTCGTCTCATCACCGCGCAGTGTGCCTCTTGGGGAGGTG
GGTGCCGACGTCCTACCTCTTGCATGCATATGGCGGGGCTATCGGGTATG
CTTGGGTTTCTGTGGCCCCGATCACGTATCGGTATTCCCGCTCGCAGTCA
TTGCATCTACCCCTTCGGTGCTCAGTTAGATTCCGGTGATGTCGCAGGCA
GAGGGATTGTAATTCTCGTCAATAGGTTGTCCAAACGAACTGATTTTTTC
ACGGTGGTTGTAAGGTTGTCGTCCAGTCCATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8373:530..5461+

>mRNA_Ecto-sp13_S_contig8373.19739.1 ID=mRNA_Ecto-sp13_S_contig8373.19739.1|Name=mRNA_Ecto-sp13_S_contig8373.19739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8373:530..5461+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCCTGGGCCTGACTCGGATAGATTTGTGCCCAACGAGGGGGGGCT
AGCTTTGAAGCAGCGGCAAGCTGTCACCGAGACAGCGGATGATTTTCTCG
CAAGGGCTCAAGAGAGAGCACCGTCGGCGGGCAATGATGTGGTGACCTTG
GGGAAGGTGGCGGAGGCCGTGGAACTCCTGAAGGAAGTGCATAGCCAGTA
CGATGAGCTGCATCGCGAGCATGACGCCAAGCTGAGCCGTTTTCAGAGGG
CGGTTGACAGGATCACCCGCAAATTGGCGGCTGTGAGTGATGACCTGGTG
CCCCAGGACGAACTGAGAGATATGTTGGCACTTCACGACGAGCTGCTTCG
CGATCGTAGTGCTGACAACAGTTAG
back to top