mRNA_Ecto-sp13_S_contig8373.19738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8373.19738.1
Unique NamemRNA_Ecto-sp13_S_contig8373.19738.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8373.19738.1 vs. uniprot
Match: A0A6H5K7G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.570e-36
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    7 NPQVKVLVGIILPEAERKVSSTSHGTQQRINHDASSAHPASRQSHAAATRRAVSDGAA-NDSEVEVLMERVASMRIRTEATHEELKAGLEASH 282
            +PQVKVLVGIILPEAERKV  TSHGTQ+R NHDASSA PASRQSHAAATR AV DGAA +D +V  LMER+ASMRIRTEA HEELKAGLEASH
Sbjct:    2 HPQVKVLVGIILPEAERKVGLTSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERMASMRIRTEARHEELKAGLEASH 94
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BLAST of mRNA_Ecto-sp13_S_contig8373.19738.1 vs. uniprot
Match: A0A6H5JP57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP57_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 5.990e-36
Identity = 75/94 (79.79%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:    1 MVNPQVKVLVGIILPEAERKVSSTSHGTQQRINHDASSAHPASRQSHAAATRRAVSDGAA-NDSEVEVLMERVASMRIRTEATHEELKAGLEAS 279
            M++PQVKVLVGI+LPEA RKV  TSHGTQ+R NHDASSA PASRQSHAAATR AV DGAA +D +V  LMER+ASMRIRTEATHEELKAGLEA+
Sbjct:    1 MMHPQVKVLVGIVLPEAGRKVGLTSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERMASMRIRTEATHEELKAGLEAA 94
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BLAST of mRNA_Ecto-sp13_S_contig8373.19738.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.900e-34
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    7 NPQVKVLVGIILPEAERKVSSTSHGTQQRINHDASSAHPASRQSHAAATRRAVSDGAA-NDSEVEVLMERVASMRIRTEATHEELKAGLEASH 282
            + +VKVLVGIILPEAERKV STSHGTQ+R NHDASSA PASRQSHAAATR A  DGAA ND +V  LMER+ASMRIRTEATHEELKAGLEASH
Sbjct:  726 DEKVKVLVGIILPEAERKVGSTSHGTQERTNHDASSAQPASRQSHAAATRPAAPDGAAKNDLDVAALMERMASMRIRTEATHEELKAGLEASH 818
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BLAST of mRNA_Ecto-sp13_S_contig8373.19738.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 6.530e-33
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    7 NPQVKVLVGIILPEAERKVSSTSHGTQQRINHDASSAHPASRQSHAAATRRAVSDGAA-NDSEVEVLMERVASMRIRTEATHEELKAGLEASH 282
            + +VKVLVGIILPEAER+V STSHGT++R+NHDASSA PASRQSHAAATR AV DGA  +D +V  LMER+ASMRIRTEATHEELKAGLEASH
Sbjct:  911 DEKVKVLVGIILPEAERRVGSTSHGTRERLNHDASSAQPASRQSHAAATRPAVPDGAPKSDIDVAALMERMASMRIRTEATHEELKAGLEASH 1003
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BLAST of mRNA_Ecto-sp13_S_contig8373.19738.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 3.920e-32
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    7 NPQVKVLVGIILPEAERKVSSTSHGTQQRINHDASSAHPASRQSHAAATRRAVSDGAA-NDSEVEVLMERVASMRIRTEATHEELKAGLEAS 279
            + +VKVLVGI+LPEA RKV  TSHGTQ+R NHDASSA PASRQSHAAATR AV DGAA +D +V  LMER+ASMRIRTEATHEELKAGLEA+
Sbjct:  116 DEKVKVLVGIVLPEAGRKVGLTSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERIASMRIRTEATHEELKAGLEAA 207
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BLAST of mRNA_Ecto-sp13_S_contig8373.19738.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 5.640e-32
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    7 NPQVKVLVGIILPEAERKVSSTSHGTQQRINHDASSAHPASRQSHAAATRRAVSDGAA-NDSEVEVLMERVASMRIRTEATHEELKAGLEASH 282
            + +VKVLVGIILPEAER+V STSH T++R NHDASSA PASRQSHAAATR AV DGAA +D +V  LMERVASMR+RTEATHEELKAGLEASH
Sbjct:  699 DEKVKVLVGIILPEAERRVGSTSHVTRERTNHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERVASMRMRTEATHEELKAGLEASH 791
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BLAST of mRNA_Ecto-sp13_S_contig8373.19738.1 vs. uniprot
Match: A0A6H5JGW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.640e-31
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    1 MVNPQVKVLVGIILPEAERKVSSTSHGTQQRINHDASSAHPASRQSHAAATRRAVSDGAA-NDSEVEVLMERVASMRIRTEATHEELKAGLEASH 282
            M++PQVKVLVGIILPEAERKV+STSHGTQ+R NHDASSA PASRQSHAAATR AV DGAA +D +V  LMER+    +RTEA H EL++GL+ASH
Sbjct:    1 MMHPQVKVLVGIILPEAERKVNSTSHGTQERANHDASSAQPASRQSHAAATRPAVPDGAAKSDIDVAALMERL----VRTEARHVELESGLKASH 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8373.19738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K7G3_9PHAE1.570e-3682.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP57_9PHAE5.990e-3679.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA1_ECTSI2.900e-3482.80Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA0_ECTSI6.530e-3379.57Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5KC16_9PHAE3.920e-3278.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA2_ECTSI5.640e-3279.57Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JGW4_9PHAE1.640e-3173.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8373contigEcto-sp13_S_contig8373:205..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score137.5
Seed ortholog evalue4.6e-30
Seed eggNOG ortholog2880.D7FUA1
Model size402
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size402
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464107.463919-CDS-Ecto-sp13_S_contig8373:204..6061681464107.463919-CDS-Ecto-sp13_S_contig8373:204..606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8373 205..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8373.19738.1prot_Ecto-sp13_S_contig8373.19738.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8373 205..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8373.19738.1

>prot_Ecto-sp13_S_contig8373.19738.1 ID=prot_Ecto-sp13_S_contig8373.19738.1|Name=mRNA_Ecto-sp13_S_contig8373.19738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MVNPQVKVLVGIILPEAERKVSSTSHGTQQRINHDASSAHPASRQSHAAA
TRRAVSDGAANDSEVEVLMERVASMRIRTEATHEELKAGLEASHAKQVEL
EAGLEAAQVKNTTLEDGLEAATAKNAKLESEVR*
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mRNA from alignment at Ecto-sp13_S_contig8373:205..606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8373.19738.1 ID=mRNA_Ecto-sp13_S_contig8373.19738.1|Name=mRNA_Ecto-sp13_S_contig8373.19738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8373:205..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAATCCCCAGGTAAAAGTTCTTGTTGGGATTATACTCCCAGAGGC
CGAGCGCAAAGTTAGTTCGACATCTCACGGGACGCAGCAGCGAATCAATC
ACGACGCTAGCTCCGCCCACCCAGCTTCACGGCAGTCGCATGCTGCAGCT
ACTCGTCGAGCCGTTTCCGACGGTGCTGCCAATGATAGTGAGGTGGAAGT
TTTGATGGAGCGCGTGGCTTCCATGCGCATTCGCACGGAAGCAACGCACG
AAGAGCTTAAAGCCGGTCTAGAAGCTTCTCATGCGAAACAGGTCGAGCTT
GAAGCTGGTCTAGAAGCGGCTCAGGTAAAGAACACCACGCTAGAAGACGG
TCTGGAAGCGGCAACTGCAAAAAACGCCAAGCTGGAGTCTGAGGTACGGT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8373:205..606+

>mRNA_Ecto-sp13_S_contig8373.19738.1 ID=mRNA_Ecto-sp13_S_contig8373.19738.1|Name=mRNA_Ecto-sp13_S_contig8373.19738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8373:205..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAATCCCCAGGTAAAAGTTCTTGTTGGGATTATACTCCCAGAGGC
CGAGCGCAAAGTTAGTTCGACATCTCACGGGACGCAGCAGCGAATCAATC
ACGACGCTAGCTCCGCCCACCCAGCTTCACGGCAGTCGCATGCTGCAGCT
ACTCGTCGAGCCGTTTCCGACGGTGCTGCCAATGATAGTGAGGTGGAAGT
TTTGATGGAGCGCGTGGCTTCCATGCGCATTCGCACGGAAGCAACGCACG
AAGAGCTTAAAGCCGGTCTAGAAGCTTCTCATGCGAAACAGGTCGAGCTT
GAAGCTGGTCTAGAAGCGGCTCAGGTAAAGAACACCACGCTAGAAGACGG
TCTGGAAGCGGCAACTGCAAAAAACGCCAAGCTGGAGTCTGAGGTACGGT
GA
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