mRNA_Ecto-sp13_S_contig8368.19733.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 311 bits (797), Expect = 1.370e-93 Identity = 184/287 (64.11%), Postives = 208/287 (72.47%), Query Frame = 3
Query: 1050 GGSGCGRGADMMPGDMNEDGVSGYLLEEVASYERNDHGGQRLGKKHLRKLLRAILRGCLDGSSCTEQKPIEVLLLEVLPEADSRPAATPGMPKEVIVRSRAVLAPAHDGGLPLMADFAAMRAELAALKSAKDKQQAELQAELEGSTFAKDELERKVKSEILTCKGNSKNPVSDVQILLSRHHEALFSCLFHYKGEKLEKHVPEVDSDPDDDVDFAGGLALRRRVAVTETAKGFLDRARGRATAVADHDSVTVSEQREFEALQNEKHREHEARFRELEREISNATKRK 1910
GGSGCGRGADMMPGDM+E+ V YLLEEV +YERNDHGG+RLGKKHLRKLL+AI GCLDGS+ T QK I++LLLE+LPEAD +PAATPG PKEV+VRS A AHD GLP A+FAA++AELAALKSAKDKQQAEL+ E A + + K + K +KLE+HVPE+DS+PDDDVDF G LALRRRVAV+ETAKGFLDRAR RA ADH VTVSEQREFEALQNEKHREHEAR RELE +IS AT RK
Sbjct: 373 GGSGCGRGADMMPGDMSEEDVFKYLLEEVTAYERNDHGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQK-IKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAELE-EXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXX------XXLERKVKKLEEHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAADHHPVTVSEQREFEALQNEKHREHEARLRELEGQISKATIRK 651
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 301 bits (770), Expect = 8.220e-88 Identity = 178/284 (62.68%), Postives = 204/284 (71.83%), Query Frame = 3
Query: 1050 GGSGCGRGADMMPGDMNEDGVSGYLLEEVASYERNDHGGQRLGKKHLRKLLRAILRGCLDGSSCTEQKPIEVLLLEVLPEADSRPAATPGMPKEVIVRSRAVLAPAHDGGLPLMADFAAMRAELAALKSAKDKQQAELQAELEGSTFAKDELERKVKSEILTCKGNSKNPVSDVQILLSRHHEALFSCLFHYKGEKLEKHVPEVDSDPDDDVDFAGGLALRRRVAVTETAKGFLDRARGRATAVADHDSVTVSEQREFEALQNEKHREHEARFRELEREISNAT 1901
GGSGCGRGADMMPGDM+E+ V YLLEEV + ERNDHGG+RLGK+HLRKLL+AI GCLDGS+ T QK I++LLLE+LPEAD +PAATPG PKEV+VRS A AHD GLP A+FAA++AELAALKSAKDKQQAEL+ E A + + K + E K +KLE+HVPE+DS+PDDDVDF G LALRRRVAV+ETAKGFLDRAR RA DH VTVSEQREFEALQ+EKHREHEAR RELE +I AT
Sbjct: 568 GGSGCGRGADMMPGDMSEEDVFKYLLEEVTADERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQK-IKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAELE-EXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXXXE------LERKVKKLEQHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAVDHHPVTVSEQREFEALQDEKHREHEARLRELEGQIIKAT 843
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 292 bits (747), Expect = 1.580e-84 Identity = 179/342 (52.34%), Postives = 214/342 (62.57%), Query Frame = 1
Query: 46 SALSEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVPLGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGVRFNHQKMASSSGGHPTSHQSTAGWELL--FRRSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLALQLADGLRHDARTTANDIYEVRVSATGASTAALDV 1065
SALS+F N RR KL+GGPA GEGLDSWR RI PK+ETKPQTL+GD++EED P V LP QQQ+ VPLG P R + L P + G+ ++ + +ST + + SD++ R KLGTLVT+STALGE+AL++TEDM++Q+KELALPA S AYY AVR G C AYLAASVIDSD VS SKTGGMGKAGAA+KLMSSA+ VVGGLPELAGKALEAG+ +LQTRRLVKIT +A D V+ C LARRLALQL DGLR+DA TA++ EVRV T D+
Sbjct: 285 SALSKFGLKNTGSKAFLRRGNKLTGGPAKGEGLDSWRARIRPKQETKPQTLKGDEKEEDAPXXXXXXXXVLLP-QQQETGEXXXNEKDNPVPLGFPNQREEAVWERARSPERASLSPGKAEEMDRLFSAQLSSSAGLDSLIREKPKALEDIQRVIESTVAGSVSPDDKLSDIDGRRKLGTLVTMSTALGEVALRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGMNGGADM 625
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI) HSP 1 Score: 254 bits (648), Expect = 2.730e-71 Identity = 163/345 (47.25%), Postives = 205/345 (59.42%), Query Frame = 1
Query: 49 ALSEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVPLGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGVRFNHQKMASSSGGHPTSHQSTAGWELLFR---------------RSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLALQLADGLRHDARTTANDIYEVRVSAT 1038
ALSEFEFG+ RR +L+GGPA GEGLDSWRER+ PK +TK Q GD+ E+D PV P S + + +A E + SP+ L P + + R +++SS+G ++ E + R SDM+ R KLGTLVT+STALGE+ LK+TEDMDV+++EL LP S+AYY AVR G CNAYLAASVIDSD VS SKTGGMGKAGAALK+MS A+ VVGG LAGKA+++G+ +LQTRRLVKIT +A D +E CSLARRLALQLA GLR+DA AN++ +R T
Sbjct: 226 ALSEFEFGSTGLKAFLRRGNRLTGGPAYGEGLDSWRERLAPKHKTKLQIFRGDRMEKDAPVPPGS--------RNGRHEAVGER-------VRSPE--------------HASLSPEKAEEA-------------DRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASVAGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKITAMAHDAIECCSLARRLALQLAGGLRNDANAGANEVDHIRADIT 528
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 214 bits (544), Expect = 2.870e-55 Identity = 160/384 (41.67%), Postives = 195/384 (50.78%), Query Frame = 1
Query: 55 SEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVP--------------------------------------------------------LGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGV-RFNHQKMASSSGGHPTSHQSTAGWELLFRR---------------SDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLALQLADGLRHD 990
S+F F N ++RR KL+GGPA GE LD WR+R+ ETKPQTLE + E +P +P LP Q + I+ G++ +P LGSP R V REG RS + V R +++SS+G ++ E + R SDMERR KLGTLV ++ ALGE+AL +TEDMDVQ+KELAL S+AYY AVR G CNAYLAASVIDSD VS KTGGMGK G AL L+SSA+ V+ GL LAGKAL G+ LQTRRLVKIT +A DT+E CSLARRLALQL DGL+ D
Sbjct: 263 SKFRFRNAGWKALFRRGNKLAGGPAHGERLDLWRDRMWRNHETKPQTLEVVQTGE----APVTPPPFLLP-QPKDINEGEKKEEDAPLPSPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSPNQRE--------------EVVREGVRSPEHASLSPEKAEEVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDD 627
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 199 bits (507), Expect = 1.680e-50 Identity = 153/400 (38.25%), Postives = 188/400 (47.00%), Query Frame = 1
Query: 49 ALSEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVP------------------------------------------------------------------------------------LGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PC--VQCAAFVLCGVRFNHQKMASSSGGHPTSHQSTAGWELLFRRSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLALQLADGLRHD 990
ALS+F F N + RR KL+GGPA GE LD WR+R+ ETKPQTL+ + ED PV P + FL Q ++I+ G++ + L SP R+ GG L P + VQ ++ A + G+ SDMERR KLG L+ ++ ALGE+AL +TED DVQ+KELAL S+AYY AVR G CNAYLAASVIDSD VS SKTGGMGK G AL L+SSA+ V+ GL LAGKAL G+ +LQTRRL KIT +A DT+E CSLARRLALQL DGL+ D
Sbjct: 269 ALSKFWFRNPGWKALLRRGNKLAGGPAHGERLDLWRDRMWRNHETKPQTLKV-VQTEDAPVPPPPLTPPFLLPQPKEINEGEKKEEDVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVSPTHRQAAVGGRVRSPENASLSPGKAAEVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLALQLTDGLKDD 667
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FH88_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI) HSP 1 Score: 142 bits (357), Expect = 7.120e-33 Identity = 109/259 (42.08%), Postives = 133/259 (51.35%), Query Frame = 1
Query: 55 SEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVPLGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGVRFNHQKMASSS-GGHPTS---------HQSTAGWELLFRRSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALK 801
S + GN + RR KL+GGPA GE L +W++RIL K+ Q ++ ++E P P LP DE +PLGSP G R V RE S Q L V+ + S G +P + Q RSDMER +LGTL ++STALGE+ LK+TEDMDVQQKELALPA RAYY AVR G C AYLAASVI+SD VS SKTGGMGK G A++
Sbjct: 192 STLQVGNTRSKAILRRGNKLTGGPAKGEALGAWKDRILRKQ----QAVKDQQKEARAPEPPXXXXXRLLP-XXXXAGESDEKEENAPMPLGSPTQ-----GEEVALERT---VSRE-HDSLSLEQAEPGRLFRVQLSSSAWLDSLIGENPEALEDIQRVIESQVPGSVSPDDERSDMERHRELGTLASMSTALGEVVLKHTEDMDVQQKELALPAFWRAYYTAVRTGLCEAYLAASVINSDWVSTSKTGGMGKVGVAVR 436
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: A0A6H5KJV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV0_9PHAE) HSP 1 Score: 140 bits (354), Expect = 4.630e-32 Identity = 89/161 (55.28%), Postives = 102/161 (63.35%), Query Frame = 1
Query: 541 RRSDMERRGKLGTLVTVSTALGELA-------------------------------LKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGK---------AGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVK 903
+ SDM+ R KL TLVT+STALGE+A L++TEDMDVQ+KE+ALP +AY VR G C AYLA+SVIDSD VSMSKTGGMGK AGAA+KLMS A+ VVGGLPELAGKALEAG+ QTRRLVK
Sbjct: 205 KHSDMDGRRKLATLVTMSTALGEVAVSPVRGTIPSACTSNGLTSFSVRNWCRIWNVLRHTEDMDVQRKEMALPLFLKAYCTVVRSGLCQAYLASSVIDSDWVSMSKTGGMGKVGAALGSKSAGAAVKLMSRAVPVVGGLPELAGKALEAGDHFFQTRRLVK 365
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: A0A6H5JDK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK8_9PHAE) HSP 1 Score: 135 bits (340), Expect = 3.470e-31 Identity = 112/305 (36.72%), Postives = 144/305 (47.21%), Query Frame = 1
Query: 16 GVILTELGNLSALSEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVPLGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGVRFNHQKMASSSG-GHPTSHQSTAGWELLFRRSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAAL--------KLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVK 903
G + T L NLSALS + GN + RR KL+GGPA GE L +W++RIL K+ Q ++ ++E P P S LP QQQ+ D+ +PLGS +P FL PR+ + RF +++SS+G G P + D G GT PA YY AVR G C YLAASVI+SD VS SKTG +G+ GAA+ KL+SS + VVGGLPELAGKALE G+ +LQ+RRLVK
Sbjct: 16 GAVPTGLANLSALSTLQVGNTRSKAILRRGNKLTGGPAKGEALGAWKDRILRKQ----QAVKDQQKEAQAPEPPPSTPPRLLP-QQQEAGESDQKEENAPMPLGSSTQGEEVMEDRAPSLEHAFLSPRKEQEV-------------DRFFRAQLSSSAGLGSPIRENPES-------LEDNATHG--GTS---------------------------PAFWSVYYTAVRTGLCEGYLAASVINSDWVSASKTGSIGEVGAAVRARARAAFKLLSSTVPVVGGLPELAGKALEIGDHYLQSRRLVK 266
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 128 bits (322), Expect = 4.420e-27 Identity = 69/137 (50.36%), Postives = 98/137 (71.53%), Query Frame = 1
Query: 550 DMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLA 960
D E+ L L ++T L E+A + ED +Q++E L +AY++AVR G CNA+LA+SV+ S+ V+ SKTGG+G AG ALKL+S+A+ +VGGL +A AL+ G++++QTRR+VKI +A D VE CSLARRLA
Sbjct: 767 DEEKLRDLNRLAEMATTLSEIASSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLA 903 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8368.19733.1 >prot_Ecto-sp13_S_contig8368.19733.1 ID=prot_Ecto-sp13_S_contig8368.19733.1|Name=mRNA_Ecto-sp13_S_contig8368.19733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp MMPGDMNEDGVSGYLLEEVASYERNDHGGQRLGKKHLRKLLRAILRGCLDback to top mRNA from alignment at Ecto-sp13_S_contig8368:500..6105+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8368.19733.1 ID=mRNA_Ecto-sp13_S_contig8368.19733.1|Name=mRNA_Ecto-sp13_S_contig8368.19733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8368:500..6105+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8368:500..6105+ >mRNA_Ecto-sp13_S_contig8368.19733.1 ID=mRNA_Ecto-sp13_S_contig8368.19733.1|Name=mRNA_Ecto-sp13_S_contig8368.19733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8368:500..6105+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |