mRNA_Ecto-sp13_S_contig8368.19733.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8368.19733.1
Unique NamemRNA_Ecto-sp13_S_contig8368.19733.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 1.370e-93
Identity = 184/287 (64.11%), Postives = 208/287 (72.47%), Query Frame = 3
Query: 1050 GGSGCGRGADMMPGDMNEDGVSGYLLEEVASYERNDHGGQRLGKKHLRKLLRAILRGCLDGSSCTEQKPIEVLLLEVLPEADSRPAATPGMPKEVIVRSRAVLAPAHDGGLPLMADFAAMRAELAALKSAKDKQQAELQAELEGSTFAKDELERKVKSEILTCKGNSKNPVSDVQILLSRHHEALFSCLFHYKGEKLEKHVPEVDSDPDDDVDFAGGLALRRRVAVTETAKGFLDRARGRATAVADHDSVTVSEQREFEALQNEKHREHEARFRELEREISNATKRK 1910
            GGSGCGRGADMMPGDM+E+ V  YLLEEV +YERNDHGG+RLGKKHLRKLL+AI  GCLDGS+ T QK I++LLLE+LPEAD +PAATPG PKEV+VRS    A AHD GLP  A+FAA++AELAALKSAKDKQQAEL+ E      A + +           K   +                        K +KLE+HVPE+DS+PDDDVDF G LALRRRVAV+ETAKGFLDRAR RA   ADH  VTVSEQREFEALQNEKHREHEAR RELE +IS AT RK
Sbjct:  373 GGSGCGRGADMMPGDMSEEDVFKYLLEEVTAYERNDHGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQK-IKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAELE-EXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXX------XXLERKVKKLEEHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAADHHPVTVSEQREFEALQNEKHREHEARLRELEGQISKATIRK 651          
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 8.220e-88
Identity = 178/284 (62.68%), Postives = 204/284 (71.83%), Query Frame = 3
Query: 1050 GGSGCGRGADMMPGDMNEDGVSGYLLEEVASYERNDHGGQRLGKKHLRKLLRAILRGCLDGSSCTEQKPIEVLLLEVLPEADSRPAATPGMPKEVIVRSRAVLAPAHDGGLPLMADFAAMRAELAALKSAKDKQQAELQAELEGSTFAKDELERKVKSEILTCKGNSKNPVSDVQILLSRHHEALFSCLFHYKGEKLEKHVPEVDSDPDDDVDFAGGLALRRRVAVTETAKGFLDRARGRATAVADHDSVTVSEQREFEALQNEKHREHEARFRELEREISNAT 1901
            GGSGCGRGADMMPGDM+E+ V  YLLEEV + ERNDHGG+RLGK+HLRKLL+AI  GCLDGS+ T QK I++LLLE+LPEAD +PAATPG PKEV+VRS    A AHD GLP  A+FAA++AELAALKSAKDKQQAEL+ E      A + +           K   +              E         K +KLE+HVPE+DS+PDDDVDF G LALRRRVAV+ETAKGFLDRAR RA    DH  VTVSEQREFEALQ+EKHREHEAR RELE +I  AT
Sbjct:  568 GGSGCGRGADMMPGDMSEEDVFKYLLEEVTADERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQK-IKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAELE-EXXXXXVAVESVXXXXXXXXEALKSGRRXXXXXXXXXXXXXXE------LERKVKKLEQHVPELDSEPDDDVDFGGELALRRRVAVSETAKGFLDRARDRAARAVDHHPVTVSEQREFEALQDEKHREHEARLRELEGQIIKAT 843          
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 1.580e-84
Identity = 179/342 (52.34%), Postives = 214/342 (62.57%), Query Frame = 1
Query:   46 SALSEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVPLGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGVRFNHQKMASSSGGHPTSHQSTAGWELL--FRRSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLALQLADGLRHDARTTANDIYEVRVSATGASTAALDV 1065
            SALS+F   N       RR  KL+GGPA GEGLDSWR RI PK+ETKPQTL+GD++EED P        V LP QQQ+            VPLG P  R       +       L P +                G+    ++   +        +ST    +    + SD++ R KLGTLVT+STALGE+AL++TEDM++Q+KELALPA S AYY AVR G C AYLAASVIDSD VS SKTGGMGKAGAA+KLMSSA+ VVGGLPELAGKALEAG+ +LQTRRLVKIT +A D V+ C LARRLALQL DGLR+DA  TA++  EVRV  T       D+
Sbjct:  285 SALSKFGLKNTGSKAFLRRGNKLTGGPAKGEGLDSWRARIRPKQETKPQTLKGDEKEEDAPXXXXXXXXVLLP-QQQETGEXXXNEKDNPVPLGFPNQREEAVWERARSPERASLSPGKAEEMDRLFSAQLSSSAGLDSLIREKPKALEDIQRVIESTVAGSVSPDDKLSDIDGRRKLGTLVTMSTALGEVALRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGMNGGADM 625          
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 2.730e-71
Identity = 163/345 (47.25%), Postives = 205/345 (59.42%), Query Frame = 1
Query:   49 ALSEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVPLGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGVRFNHQKMASSSGGHPTSHQSTAGWELLFR---------------RSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLALQLADGLRHDARTTANDIYEVRVSAT 1038
            ALSEFEFG+       RR  +L+GGPA GEGLDSWRER+ PK +TK Q   GD+ E+D PV P S        +  + +A  E        + SP+                 L P +   +              R    +++SS+G      ++    E + R                SDM+ R KLGTLVT+STALGE+ LK+TEDMDV+++EL LP  S+AYY AVR G CNAYLAASVIDSD VS SKTGGMGKAGAALK+MS A+ VVGG   LAGKA+++G+ +LQTRRLVKIT +A D +E CSLARRLALQLA GLR+DA   AN++  +R   T
Sbjct:  226 ALSEFEFGSTGLKAFLRRGNRLTGGPAYGEGLDSWRERLAPKHKTKLQIFRGDRMEKDAPVPPGS--------RNGRHEAVGER-------VRSPE--------------HASLSPEKAEEA-------------DRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASVAGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKITAMAHDAIECCSLARRLALQLAGGLRNDANAGANEVDHIRADIT 528          
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.870e-55
Identity = 160/384 (41.67%), Postives = 195/384 (50.78%), Query Frame = 1
Query:   55 SEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVP--------------------------------------------------------LGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGV-RFNHQKMASSSGGHPTSHQSTAGWELLFRR---------------SDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLALQLADGLRHD 990
            S+F F N     ++RR  KL+GGPA GE LD WR+R+    ETKPQTLE  +  E    +P +P    LP Q + I+ G++      +P                                                        LGSP  R                V REG RS      +      V R    +++SS+G      ++    E + R                SDMERR KLGTLV ++ ALGE+AL +TEDMDVQ+KELAL   S+AYY AVR G CNAYLAASVIDSD VS  KTGGMGK G AL L+SSA+ V+ GL  LAGKAL  G+  LQTRRLVKIT +A DT+E CSLARRLALQL DGL+ D
Sbjct:  263 SKFRFRNAGWKALFRRGNKLAGGPAHGERLDLWRDRMWRNHETKPQTLEVVQTGE----APVTPPPFLLP-QPKDINEGEKKEEDAPLPSPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSPNQRE--------------EVVREGVRSPEHASLSPEKAEEVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDD 627          
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 1.680e-50
Identity = 153/400 (38.25%), Postives = 188/400 (47.00%), Query Frame = 1
Query:   49 ALSEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVP------------------------------------------------------------------------------------LGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PC--VQCAAFVLCGVRFNHQKMASSSGGHPTSHQSTAGWELLFRRSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLALQLADGLRHD 990
            ALS+F F N     + RR  KL+GGPA GE LD WR+R+    ETKPQTL+   + ED PV P   +  FL  Q ++I+ G++      +                                                                                     L SP  R+   GG         L P +         VQ ++             A           +  G+      SDMERR KLG L+ ++ ALGE+AL +TED DVQ+KELAL   S+AYY AVR G CNAYLAASVIDSD VS SKTGGMGK G AL L+SSA+ V+ GL  LAGKAL  G+ +LQTRRL KIT +A DT+E CSLARRLALQL DGL+ D
Sbjct:  269 ALSKFWFRNPGWKALLRRGNKLAGGPAHGERLDLWRDRMWRNHETKPQTLKV-VQTEDAPVPPPPLTPPFLLPQPKEINEGEKKEEDVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVSPTHRQAAVGGRVRSPENASLSPGKAAEVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLALQLTDGLKDD 667          
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FH88_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 7.120e-33
Identity = 109/259 (42.08%), Postives = 133/259 (51.35%), Query Frame = 1
Query:   55 SEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVPLGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGVRFNHQKMASSS-GGHPTS---------HQSTAGWELLFRRSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALK 801
            S  + GN     + RR  KL+GGPA GE L +W++RIL K+    Q ++  ++E   P  P       LP         DE      +PLGSP       G      R    V RE   S    Q     L  V+ +      S  G +P +          Q          RSDMER  +LGTL ++STALGE+ LK+TEDMDVQQKELALPA  RAYY AVR G C AYLAASVI+SD VS SKTGGMGK G A++
Sbjct:  192 STLQVGNTRSKAILRRGNKLTGGPAKGEALGAWKDRILRKQ----QAVKDQQKEARAPEPPXXXXXRLLP-XXXXAGESDEKEENAPMPLGSPTQ-----GEEVALERT---VSRE-HDSLSLEQAEPGRLFRVQLSSSAWLDSLIGENPEALEDIQRVIESQVPGSVSPDDERSDMERHRELGTLASMSTALGEVVLKHTEDMDVQQKELALPAFWRAYYTAVRTGLCEAYLAASVINSDWVSTSKTGGMGKVGVAVR 436          
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: A0A6H5KJV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 4.630e-32
Identity = 89/161 (55.28%), Postives = 102/161 (63.35%), Query Frame = 1
Query:  541 RRSDMERRGKLGTLVTVSTALGELA-------------------------------LKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGK---------AGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVK 903
            + SDM+ R KL TLVT+STALGE+A                               L++TEDMDVQ+KE+ALP   +AY   VR G C AYLA+SVIDSD VSMSKTGGMGK         AGAA+KLMS A+ VVGGLPELAGKALEAG+   QTRRLVK
Sbjct:  205 KHSDMDGRRKLATLVTMSTALGEVAVSPVRGTIPSACTSNGLTSFSVRNWCRIWNVLRHTEDMDVQRKEMALPLFLKAYCTVVRSGLCQAYLASSVIDSDWVSMSKTGGMGKVGAALGSKSAGAAVKLMSRAVPVVGGLPELAGKALEAGDHFFQTRRLVK 365          
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: A0A6H5JDK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK8_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.470e-31
Identity = 112/305 (36.72%), Postives = 144/305 (47.21%), Query Frame = 1
Query:   16 GVILTELGNLSALSEFEFGNNAPYFVWRRPKKLSGGPAVGEGLDSWRERILPKRETKPQTLEGDKEEEDPPVSPTSPSWVFLP*QQQQIDAGDEXXXXXXVPLGSPQPRRGGGGGTSPFSRICFLVPREGRRS*PCVQCAAFVLCGVRFNHQKMASSSG-GHPTSHQSTAGWELLFRRSDMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAAL--------KLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVK 903
            G + T L NLSALS  + GN     + RR  KL+GGPA GE L +W++RIL K+    Q ++  ++E   P  P S     LP QQQ+    D+      +PLGS           +P     FL PR+ +                RF   +++SS+G G P      +         D    G  GT                            PA    YY AVR G C  YLAASVI+SD VS SKTG +G+ GAA+        KL+SS + VVGGLPELAGKALE G+ +LQ+RRLVK
Sbjct:   16 GAVPTGLANLSALSTLQVGNTRSKAILRRGNKLTGGPAKGEALGAWKDRILRKQ----QAVKDQQKEAQAPEPPPSTPPRLLP-QQQEAGESDQKEENAPMPLGSSTQGEEVMEDRAPSLEHAFLSPRKEQEV-------------DRFFRAQLSSSAGLGSPIRENPES-------LEDNATHG--GTS---------------------------PAFWSVYYTAVRTGLCEGYLAASVINSDWVSASKTGSIGEVGAAVRARARAAFKLLSSTVPVVGGLPELAGKALEIGDHYLQSRRLVK 266          
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.420e-27
Identity = 69/137 (50.36%), Postives = 98/137 (71.53%), Query Frame = 1
Query:  550 DMERRGKLGTLVTVSTALGELALKYTEDMDVQQKELALPACSRAYYDAVRPGTCNAYLAASVIDSDCVSMSKTGGMGKAGAALKLMSSALAVVGGLPELAGKALEAGEQHLQTRRLVKITVLAPDTVESCSLARRLA 960
            D E+   L  L  ++T L E+A  + ED  +Q++E  L    +AY++AVR G CNA+LA+SV+ S+ V+ SKTGG+G AG ALKL+S+A+ +VGGL  +A  AL+ G++++QTRR+VKI  +A D VE CSLARRLA
Sbjct:  767 DEEKLRDLNRLAEMATTLSEIASSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLA 903          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8368.19733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G1L2_ECTSI1.370e-9364.11Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA3_ECTSI8.220e-8862.68Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FH90_ECTSI1.580e-8452.34Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FHA2_ECTSI2.730e-7147.25Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KZF6_9PHAE2.870e-5541.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH89_ECTSI1.680e-5038.25Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FH88_ECTSI7.120e-3342.08Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5KJV0_9PHAE4.630e-3255.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDK8_9PHAE3.470e-3136.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS8_ECTSI4.420e-2750.36Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8368contigEcto-sp13_S_contig8368:500..6105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score288.9
Seed ortholog evalue2.5e-75
Seed eggNOG ortholog2880.D7FHA3
Model size1910
Hectar predicted targeting categoryother localisation
Exons11
EggNOG free text desc.Leucine rich repeat
EggNOG OGs2QVSR@2759,COG4886@1
Cds size831
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8368.19733.1prot_Ecto-sp13_S_contig8368.19733.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8368 4099..6105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464106.8766685-UTR-Ecto-sp13_S_contig8368:499..6171681464106.8766685-UTR-Ecto-sp13_S_contig8368:499..617Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8368 500..617 +
1681464106.8907304-UTR-Ecto-sp13_S_contig8368:2454..29511681464106.8907304-UTR-Ecto-sp13_S_contig8368:2454..2951Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8368 2455..2951 +
1681464106.901136-UTR-Ecto-sp13_S_contig8368:3078..32461681464106.901136-UTR-Ecto-sp13_S_contig8368:3078..3246Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8368 3079..3246 +
1681464106.913237-UTR-Ecto-sp13_S_contig8368:3361..34811681464106.913237-UTR-Ecto-sp13_S_contig8368:3361..3481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8368 3362..3481 +
1681464106.9319127-UTR-Ecto-sp13_S_contig8368:3596..37431681464106.9319127-UTR-Ecto-sp13_S_contig8368:3596..3743Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8368 3597..3743 +
1681464106.945859-UTR-Ecto-sp13_S_contig8368:4069..40981681464106.945859-UTR-Ecto-sp13_S_contig8368:4069..4098Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8368 4070..4098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464106.9633946-CDS-Ecto-sp13_S_contig8368:4098..41791681464106.9633946-CDS-Ecto-sp13_S_contig8368:4098..4179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8368 4099..4179 +
1681464106.9754658-CDS-Ecto-sp13_S_contig8368:4356..44491681464106.9754658-CDS-Ecto-sp13_S_contig8368:4356..4449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8368 4357..4449 +
1681464106.987069-CDS-Ecto-sp13_S_contig8368:4754..50491681464106.987069-CDS-Ecto-sp13_S_contig8368:4754..5049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8368 4755..5049 +
1681464106.997653-CDS-Ecto-sp13_S_contig8368:5113..52571681464106.997653-CDS-Ecto-sp13_S_contig8368:5113..5257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8368 5114..5257 +
1681464107.0088358-CDS-Ecto-sp13_S_contig8368:5414..54921681464107.0088358-CDS-Ecto-sp13_S_contig8368:5414..5492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8368 5415..5492 +
1681464107.020093-CDS-Ecto-sp13_S_contig8368:5965..61051681464107.020093-CDS-Ecto-sp13_S_contig8368:5965..6105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8368 5966..6105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8368.19733.1

>prot_Ecto-sp13_S_contig8368.19733.1 ID=prot_Ecto-sp13_S_contig8368.19733.1|Name=mRNA_Ecto-sp13_S_contig8368.19733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp
MMPGDMNEDGVSGYLLEEVASYERNDHGGQRLGKKHLRKLLRAILRGCLD
GSSCTEQKPIEVLLLEVLPEADSRPAATPGMPKEVIVRSRAVLAPAHDGG
LPLMADFAAMRAELAALKSAKDKQQAELQAELEGSTFAKDELERKVKSEI
LTCKGNSKNPVSDVQILLSRHHEALFSCLFHYKGEKLEKHVPEVDSDPDD
DVDFAGGLALRRRVAVTETAKGFLDRARGRATAVADHDSVTVSEQREFEA
LQNEKHREHEARFRELEREISNATKRK
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mRNA from alignment at Ecto-sp13_S_contig8368:500..6105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8368.19733.1 ID=mRNA_Ecto-sp13_S_contig8368.19733.1|Name=mRNA_Ecto-sp13_S_contig8368.19733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8368:500..6105+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCTGCTTGTGCAGGAGTAATCCTGACGGAGCTGGGAAACTTGAGTGC TCTTTCGGAGTTTGAGTTTGGAAACAACGCCCCATACTTTGTCTGGCGCC GTCCCAAGAAACTTTCCGGTGAGCACAAAGAATGGACACACATGAATGAA TGGTTTGTCGAAGGTAATGGCGAGCACAGCCGTGGAGGATACCGAACCTT GCCCACGCGTTGTGAGGAACACATCGCACTCAGCAGCCAGCCAGCAATCT TCATCAAGCTGCAGCGTTTAAAAAGCGTCAGCCGTTCCCATCATAATCGA GATAGGACCGTCAGCGTACGATCAAGTACAACATCCGCACCTTATTTGGT CATGTTACCGTACGACACATGGAAATGGCTGATTCCCCCCACCCGAATTA TACCAGGTGTACCGATACTTGTTTTCTTCCCTGAGCACTCTACGGCTTCC CGTGGACACCTGGAACAGGTTTACCATAGCTGGGTGTGCGTTTACCCTGG CCCTTTGCCAGTCTACTGATGCTGCGGAGGAGCGAGGCCAGTGTAGCATC ACCCCCTGTCTGTAAGATGTTGACGTTGTGCATCCTAGGTTGAGGTTTGC GGATGACGCGATCCAACAACGTACCTATCGCAACCGTCACCAGGCTCTCT TGCACGCACGAATATTGCCCCAGGCTGGCTACGTACGGGTTTCAGTCCTC GGTGGGAGAGCTGCCGATGCGGCGATTGTTACAACGAACGTTTACTGCCT CTCTTCCTGACCGCCAAAACGCTGCTTGTGCAGGAGTAATCCCGACAGAG CTGGAAACTTGAGTGCTATTTGGACATTTGAGTTTAGAAACATCGTAACA TTATGCATCTGGCGCCGTCGCAAGAAACGTTCCGGTGAGTACAAGGCATG GAGAAACACACACCTGAACGAATCGGGAATGTCAACGGTGATGGCGAGCA CGAAACGATGTGGCACATCACCTTGTACGGGTGTTGTGAGGAACGCATCG CACTCGGCAGCCAGCCAGCTATCTCCATGAACTTGCAGCTCTTAGAAAGC AGCAGCCGTCCCCATCATAATAGGGAGGACCGTCAGAGTACGACGAAGTA CGAAATACCGTGCATGGTGCATCAGACCGAATTTGGTGCGGGTTCCGCCA GGATTGGTACTGAGACCTGTGTTCTCACATTCCCACAGGCAAGTGCACTG GTTATATACCCAGGCTCTTGCCCGTGTCCCAGTACCGGTCGGTTCTTTCC CTGGGGGATTCCCGTTGAAACAGAGGCTTATGGCAACCGCCATGTCAACC ACATCGCGAAGGTCGAACGCAAGTTGACCTATGGCAATGTTTGCACTCCA GATTTGGGGTTTAGTGACCTCCCGGATATATCATTTCATCCTCGTCATGA CTTGATGCGAATTAGTCGCAGGCCTCAGGAAAGGTCCATGTATCGTATTC TGCGACTTTGTCGCGACTTTGTCGATAATAGTGCCCCTCTGCGTGCTCGC TACTTCTTGTTTGTGTTACAATCGAAGCCGTTGAGATTCTCCCGGTATAT CTCTCACGATGCGACGAACAAAGATATTCGGTTGGTGTTTAATAGTCCCC CCTTGGTGTCTGTGTCGATTTCCCTGACCACAGCAAAAAAAAAATCGTCG CTGTTCGCTTATTGTAATTTACTTCTATGCCGCATGAGATGGCATACGTT TGGGATAAGAGACGTTTTTGAGACCGTGCCCCCTGTTGCTTCTTGTGGGG ATTTGTTTTTTTTTCATACAAAGATCTGATGAATAGTCCCTATTGACCAA GGTTACAAGCGGAAGGCGTGGGCTTTGGATTTCCTCTTTCATCAGATGCA GATCTGACGCTCGTCGACTCCCGGCTCGTGCACCATCCCTTCGACGGTAG TTTTACCATCAAGAAACGCGGCTTACAATCTTCTCGTTACCCTATTCTCA TGCAGGAGGACCCGCGGTGGGCGAGGGGCTTGATTCGTGGAGGGAACGAA TTTTGCCCAAACGAGAGACGAAACCTCAGACGCTCGAGGGTGACAAAGAG GAGGAGGACCCTCCCGTATCTCCAACCTCCCCGTCTTGGGTCTTCCTACC TTAGCAGCAGCAGCAGATTGACGCGGGCGACGAACACGAGGAGGATGCTC CCGTTCCGCTTGGCTCCCCCCAACCAAGGAGAGGAGGTGGGGGGGGGACG AGTCCGTTCTCCCGAATATGCTTCCTTGTCCCCAGGGAAGGCAGAAGAAG TTGACCGTGTGTTCAGTGCGCAGCTTTCGTCCTCTGCGGGGTCAGGTTTA ATCATCAGAAAATGGCCTCAAGCTCTGGAGGACATCCAACGAGTCATCAA AGCACCGCCGGCTGGGAGCTTTTGTTTCGACGATCAGACATGGAGAGGCG CGGGAAGCTCGGCACGTTGGTGACCGTGTCAACGGCGCTAGGCGAGCTTG CGGTGAGTCCTGTTCGTCATGCAATTCCCGCGGTACCCATTAGCAACAGC GACGAGAGCGCTGCAGCGAATATTTGTTGTCGAACATGTGTGCTTCGCCT CATCGCAACCATGCTGACCGCGTGCGCAGTTGAAGTACACCGAGGACATG GATGTACAACAGAAGGAGCTAGCGTTGCCCGCGTGTTCGAGAGCGTATTA CGACGCGGTTAGACCCGGTACGTGCAACGCCTACCTCGCAGCCAGCGTCA TCGACAGTGACTGTGTGTCCATGAGCAAGACCGGTGGCATGGGCAAGGTG GGTGCTGCCGTTAGGATCAGAGTCTGCGGATGGTGGGACCTGCGAGGTTT GTGATTGCAAATGCTCTCTGCCAGTCATTTGAGGCCCAGGTGTTTTCTCT GCTTCATTTCAGGCAGGGGCGGCCTTGAAGCTGATGTCTAGCGCGCTTGC TGTGGTCGGTGGACTGCCCGAACTAGCGGGCAAAGCGTTGGAGGCCGGAG AACAACACCTCCAAACTCGGCGATTGGTGAAAGTGAGTCTGTCGTTAAAC GTACTTGCTCCTAGCGTTGCCGTGCGCGATGCTAGACACCCTTCTTAGTC CCAGCCCGTCAAGAACGATACCTACGTCCACACTCGATACTTGGTAGATA ACGGTTTTGGCTCCTGACACGGTGGAGAGTTGCTCTCTGGCGAGACGGTT GGCGCTACAACTAGCCGACGGTCTCAGACATGACGCCAGAACCACGGCCA ACGATATCTACGAAGTTCGTGTGAGCGCCACGGGGGCATCGACGGTGCGG GGCGAAAGAGAACTGAACTTGACATCGCCATTTGAATTGTGTACTTCGGT TTGTTCGTGGCGGCACAGCGTAGGCGCATGGCTGCAAGTTGAGATGTTGA AATCCGTCAAAATGTTCAGTGGCGTTGACTCTCTTCTAATCCTTGGGGGT TGGAATACATGTCTTCGGTCACGTCACGTATTGATTGTTGTGTCTAGCCA TCGCCAGCAGTAGTACAAGCACACTGGTCTGAGCCAAGACGAGTGTCTAT TGCCCGTTGACCAAGTTTCTAACCTTGATTTACTGACTTGTGACAACTAG AACGTTTTCGTGTGCCTCAGGCGGCTCTGGATGTGGTCGAGGTGCTGATA TGATGCCTGGGGACATGAACGAAGACGGCGTATCTGGATACTTGCTTGAA GAGGTGGCCAGCTACGAACGCAACGATCATGTGAGTCCATGAAACACGAC CTACATCCTTGGCTTGAGAATGTTTGGCCGTTGTGTGGCCGTACCGTCGT CCACCCTGAGGAAGCTTCAGCAAGAGGATGTTTCTTCCCGAGTTTAGGAG AGTAATTTACCGTGGGAATTATTATCGACAGTGATTCGCTCTATTTGTTT CCTTTAGGGCGGGCAGCGACTGGGCAAGAAGCACCTTCGAAAGCTGTTGA GAGCTATTCTGCGAGGTTGCCTTGACGGCTCAAGCTGCACCGAACAAAAG GTAAGGACTCGCATGTGTTCCGGGCACAGGCGTTCGTAGTCTGTGTTTGC ATTTTGCCGTGGGAGCTCTTGGCCCGTAGAGCAAATGGTGGGGCTGCAAG GTATGCCGAGTGAGGGTCTGCAAGGGACGATAACACTGCCACCGAGCACT GTCGACGTGGAGGCCTTCGCATCTCTCACGGAATCACGCTACGGTCCAGA TGGTGTTGTGTGAAGGAACGCCTCAATCACGCTATTTCCCGAGAAAAACG TCGACACTCTCTCGTTTCATCTTGGACATCGTGTTGGTTTTGTTCATGCT GCGAGCCGATTGAGGTCCTTCTACTCGAGGTTCTTCCCGAGGCTGATAGT AGACCCGCCGCAACGCCCGGCATGCCGAAGGAAGTGATCGTCCGATCTCG TGCGGTTTTGGCGCCCGCCCACGACGGCGGATTGCCCTTGATGGCAGACT TTGCGGCCATGCGAGCAGAGTTAGCAGCGTTGAAATCCGCCAAGGACAAG CAGCAAGCAGAGCTGCAAGCAGAGCTGGAAGGGTCGACGTTCGCCAAGGA CGAGCTCGAACGCAAGGTGAAAAGCGAAATACTAACATGTAAAGGCAACT GTATGTCTGCATGCTGACCGATAGTTTTCTGGAATTCAGCGTATTCTGAG TCGAGTGGACACAGCAAAAAATCCTGTGTCCGACGTGCAAATTTTGCTCT CTCGGCATCACGAAGCGCTTTTTTCTTGTCTTTTCCACTACAAAGGTGAA AAACTGGAGAAGCATGTCCCAGAGGTCGACAGTGACCCGGACGACGATGT GGATTTCGGTGAGTCAACTTGCTCTTGTGTTGCCACCACCTTCAGCAGTG CGAGAAATCTACGGGCACGACCGAGAACAGCACCTGGAGCATTCCCAGGT TGCTGAGCCGTTAGGTGGTAGTCCCACATCGTTCCCTGGTATTGTGTTTT CACGACCAATGACAGCGGGTGGGCTGGCTCTCAGGCGACGGGTGGCTGTA ACAGAGACCGCCAAGGGATTTTTGGACAGAGCTCGAGGTAGAGGTGAGTC AACGGTCGAGAACCATGGTCGTTGTGTGTTTCTCCGACATGGTCGCGTGC GCTGGTTACCGGTTGTTTTACGTTGTCATCTTGGGACAATGGCCGAATAA GCGGACCTATAGCTAAGGATGTATTGGTTGTTTGGGAACGAGTCTTCCGG CCATCTTAGAAACCGTCGGAACGGGACAATAATAACCAAAATGCTGGAGC TAGTCCCCGGTGGTCTGAGATTCCAACCGCATCCCGTATCACGACTGTAT ACGAAGGAAATAGTCGTTTTTTCCTTACGGCGCCTCCTTTCGCGTGTTCG AAGTCACGTAACCGTGCGGTTTCCCCCTCCCCCCGCCCGAACCGTCCACC CCACCATGTGCGTTCTTAAGGTGATGTCGAAAGTGAGCTCACGGCAGAGA TACTCATGTCACTCTCTTTCATACGTACCCTTCAGTTTGTTTGCTTTCTT TCCTGGTGTGTATCAGCAACAGCGGTGGCTGACCACGATTCGGTGACTGT CTCCGAACAGAGGGAGTTTGAGGCGCTGCAGAATGAAAAGCACCGTGAAC ACGAAGCGAGGTTCAGAGAGCTCGAGAGAGAGATAAGTAACGCCACCAAA CGGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8368:500..6105+

>mRNA_Ecto-sp13_S_contig8368.19733.1 ID=mRNA_Ecto-sp13_S_contig8368.19733.1|Name=mRNA_Ecto-sp13_S_contig8368.19733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8368:500..6105+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCCTGGGGACATGAACGAAGACGGCGTATCTGGATACTTGCTTGA
AGAGGTGGCCAGCTACGAACGCAACGATCATGGCGGGCAGCGACTGGGCA
AGAAGCACCTTCGAAAGCTGTTGAGAGCTATTCTGCGAGGTTGCCTTGAC
GGCTCAAGCTGCACCGAACAAAAGCCGATTGAGGTCCTTCTACTCGAGGT
TCTTCCCGAGGCTGATAGTAGACCCGCCGCAACGCCCGGCATGCCGAAGG
AAGTGATCGTCCGATCTCGTGCGGTTTTGGCGCCCGCCCACGACGGCGGA
TTGCCCTTGATGGCAGACTTTGCGGCCATGCGAGCAGAGTTAGCAGCGTT
GAAATCCGCCAAGGACAAGCAGCAAGCAGAGCTGCAAGCAGAGCTGGAAG
GGTCGACGTTCGCCAAGGACGAGCTCGAACGCAAGGTGAAAAGCGAAATA
CTAACATGTAAAGGCAACTCAAAAAATCCTGTGTCCGACGTGCAAATTTT
GCTCTCTCGGCATCACGAAGCGCTTTTTTCTTGTCTTTTCCACTACAAAG
GTGAAAAACTGGAGAAGCATGTCCCAGAGGTCGACAGTGACCCGGACGAC
GATGTGGATTTCGCGGGTGGGCTGGCTCTCAGGCGACGGGTGGCTGTAAC
AGAGACCGCCAAGGGATTTTTGGACAGAGCTCGAGGTAGAGCAACAGCGG
TGGCTGACCACGATTCGGTGACTGTCTCCGAACAGAGGGAGTTTGAGGCG
CTGCAGAATGAAAAGCACCGTGAACACGAAGCGAGGTTCAGAGAGCTCGA
GAGAGAGATAAGTAACGCCACCAAACGGAAG
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