mRNA_Ecto-sp13_S_contig8366.19732.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8366.19732.1
Unique NamemRNA_Ecto-sp13_S_contig8366.19732.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8366.19732.1 vs. uniprot
Match: D7G531_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G531_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 1.230e-104
Identity = 178/191 (93.19%), Postives = 181/191 (94.76%), Query Frame = 1 
Query:    1 QMRLAREALTAPAQPASSALPRAQQPRNNPGSDGGGGDFGRGRAVSPDISGDLGRRRGGHADSRSPVPRSSPSTPGVEDRPHRRTRRGGRRGRNRSPRPNDQYSPKLGDEDSHQHRDPRHHLYHDGYSSASPSPRIRRGMSDPWAYADDDQHPRSSSQPRAVSRDDNQVTSGEVSGGGSIGPAPAASGVGR 573
            ++RLAREALTAPAQPASSALP AQQ RNNP SDGGGGDFGRGRAVSP  SGDLGRRRGGHADSRSPVPRSSPSTPGVEDRPHRRTRRGGRRGRNRSPRPN QYSPKLG EDSHQHRD RHHLYHDGYSSASPSPRIRR MSDPWAYADDD+HPRSSSQPRAVSRDDNQV SGEVSGGGSIGPAPAASGVGR
Sbjct:  140 KIRLAREALTAPAQPASSALPGAQQERNNPCSDGGGGDFGRGRAVSPARSGDLGRRRGGHADSRSPVPRSSPSTPGVEDRPHRRTRRGGRRGRNRSPRPNGQYSPKLGGEDSHQHRDLRHHLYHDGYSSASPSPRIRRSMSDPWAYADDDEHPRSSSQPRAVSRDDNQVASGEVSGGGSIGPAPAASGVGR 330
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BLAST of mRNA_Ecto-sp13_S_contig8366.19732.1 vs. uniprot
Match: A0A6H5KAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ7_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 4.530e-94
Identity = 175/204 (85.78%), Postives = 178/204 (87.25%), Query Frame = 1 
Query:    4 MRLAREALTAPAQPASSALPRAQQPRNNPGSDGGGGDFGRGRAVSPDISGDLGRRRGGHADSRSPVPRSSPSTPGVEDRPHRRTRRGGRRGRN------------RSPRPNDQY-SPKLGDEDSHQHRDPRHHLYHDGYSSASPSPRIRRGMSDPWAYADDDQHPRSSSQPRAVSRDDNQVTSGEVSGGGSIGPAPAASGVGRE 576
            MRLAREALTAPA PASSALP  QQ RNNPGSDGG GDFGRGRA+SP +SGDLGR RGGHADSRSPVPRSSPSTPGVEDRPHRRTRRGGRRG N            RSPRPN QY SPKLGDEDSHQHRD RHHLYHDGYSSASPSPRIRRGM+DPWAYADDDQH RSSSQPRAVSRDDNQVT  EVSGGGSIGPAPAASGVGRE
Sbjct:  137 MRLAREALTAPAPPASSALPGTQQ-RNNPGSDGGLGDFGRGRAISPALSGDLGRPRGGHADSRSPVPRSSPSTPGVEDRPHRRTRRGGRRGPNXXXXXXXPVVESRSPRPNGQYYSPKLGDEDSHQHRDLRHHLYHDGYSSASPSPRIRRGMTDPWAYADDDQHLRSSSQPRAVSRDDNQVTPLEVSGGGSIGPAPAASGVGRE 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8366.19732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G531_ECTSI1.230e-10493.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAZ7_9PHAE4.530e-9485.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8366contigEcto-sp13_S_contig8366:81..1271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size578
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008290.1
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464106.812481-UTR-Ecto-sp13_S_contig8366:80..831681464106.812481-UTR-Ecto-sp13_S_contig8366:80..83Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8366 81..83 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464106.825228-CDS-Ecto-sp13_S_contig8366:83..3641681464106.825228-CDS-Ecto-sp13_S_contig8366:83..364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8366 84..364 +
1681464106.8368602-CDS-Ecto-sp13_S_contig8366:979..12711681464106.8368602-CDS-Ecto-sp13_S_contig8366:979..1271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8366 980..1271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8366.19732.1prot_Ecto-sp13_S_contig8366.19732.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8366 84..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8366.19732.1

>prot_Ecto-sp13_S_contig8366.19732.1 ID=prot_Ecto-sp13_S_contig8366.19732.1|Name=mRNA_Ecto-sp13_S_contig8366.19732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
MRLAREALTAPAQPASSALPRAQQPRNNPGSDGGGGDFGRGRAVSPDISG
DLGRRRGGHADSRSPVPRSSPSTPGVEDRPHRRTRRGGRRGRNRSPRPND
QYSPKLGDEDSHQHRDPRHHLYHDGYSSASPSPRIRRGMSDPWAYADDDQ
HPRSSSQPRAVSRDDNQVTSGEVSGGGSIGPAPAASGVGRE
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mRNA from alignment at Ecto-sp13_S_contig8366:81..1271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8366.19732.1 ID=mRNA_Ecto-sp13_S_contig8366.19732.1|Name=mRNA_Ecto-sp13_S_contig8366.19732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1191bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8366:81..1271+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGCGTCTCGCGAGGGAGGCGCTGACCGCCCCGGCTCAGCCTGCCTC
CTCCGCCCTCCCGCGAGCACAACAACCACGGAATAATCCTGGCTCCGACG
GCGGCGGCGGCGACTTCGGCCGAGGGCGGGCTGTCTCGCCGGATATCAGC
GGCGACCTTGGGCGGCGCCGCGGGGGGCACGCGGACAGCCGGAGCCCGGT
GCCTCGCTCGAGCCCTTCCACTCCGGGTGTGGAGGATCGGCCGCATCGTC
GCACCCGGCGGGGTGGGCGGCGGGGACGCAACAGGTGACACGTGGGAGAG
TTTATCCATATACGTGGTATTTATTTTTTTGAATCGCAGCAGCGGAGGGG
GGTGCAACAGTGTTGTAGAGGGTGGGCTGGACGGGGCGGTGCGGGAAGCT
GTCCACTACCCCTGTCTTTGGTACCGCGCCGTTGCCGTTCGAAATCTCAA
GTGTTGCGCTACAGCCTGTCGTATATTGGGTCCTTTACCTGTGTTCTGGG
GGGCCGGCAATGCATATTCAAAAGAAGCCTCTTACCCGTTATTTTCCGTA
GCCGAGGTGTGGGTGCGGGTAGCTTATTTTTTTTTTCTTCCATTAATGGA
CTTTGTCGTCTGCTCCTCTGGCCCCCATCATCCACTTCTACTAGCTAGAC
GACCCAACCGGGGGTCACATAGGAGGCGGAGGCTGGATCCCCTCCTGCAG
TTCCTGCCTGAGATATTATAATCGCGAGCAGGGTGCAGCAATCCCTTCCC
TCGCGACTTATGAAGTCGATCAAGTTTACTAACATAGGTCGCCCGCGGTC
TGGTTTCCTGAAACGCTCTCGAAGACACCGCCACCTCTCGCTCGTGGGCA
CAGCCGTAAGCAAGTCCGCGCCGCCTGCTGTTTCTGTTGTCGAGAGCAGA
TCGCCTCGTCCCAACGACCAGTACTCCCCCAAGCTTGGCGACGAAGACAG
CCACCAACACCGCGACCCCCGCCACCACCTCTACCACGATGGCTACTCTA
GCGCCAGCCCTTCCCCTAGGATAAGGCGGGGCATGTCGGACCCCTGGGCC
TACGCCGACGACGACCAACACCCTCGCTCGTCCTCGCAGCCACGGGCGGT
GAGCCGGGACGATAACCAAGTGACCTCCGGAGAAGTGAGCGGCGGCGGGT
CGATTGGTCCGGCTCCCGCTGCGAGCGGGGTCGGGAGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8366:81..1271+

>mRNA_Ecto-sp13_S_contig8366.19732.1 ID=mRNA_Ecto-sp13_S_contig8366.19732.1|Name=mRNA_Ecto-sp13_S_contig8366.19732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8366:81..1271+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCTCGCGAGGGAGGCGCTGACCGCCCCGGCTCAGCCTGCCTCCTC
CGCCCTCCCGCGAGCACAACAACCACGGAATAATCCTGGCTCCGACGGCG
GCGGCGGCGACTTCGGCCGAGGGCGGGCTGTCTCGCCGGATATCAGCGGC
GACCTTGGGCGGCGCCGCGGGGGGCACGCGGACAGCCGGAGCCCGGTGCC
TCGCTCGAGCCCTTCCACTCCGGGTGTGGAGGATCGGCCGCATCGTCGCA
CCCGGCGGGGTGGGCGGCGGGGACGCAACAGATCGCCTCGTCCCAACGAC
CAGTACTCCCCCAAGCTTGGCGACGAAGACAGCCACCAACACCGCGACCC
CCGCCACCACCTCTACCACGATGGCTACTCTAGCGCCAGCCCTTCCCCTA
GGATAAGGCGGGGCATGTCGGACCCCTGGGCCTACGCCGACGACGACCAA
CACCCTCGCTCGTCCTCGCAGCCACGGGCGGTGAGCCGGGACGATAACCA
AGTGACCTCCGGAGAAGTGAGCGGCGGCGGGTCGATTGGTCCGGCTCCCG
CTGCGAGCGGGGTCGGGAGGGAG
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