mRNA_Ecto-sp13_S_contig836.19727.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: D8LG13_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG13_ECTSI) HSP 1 Score: 342 bits (877), Expect = 7.410e-114 Identity = 173/177 (97.74%), Postives = 173/177 (97.74%), Query Frame = 1
Query: 1 AFESMKASSRRLLGGEPEEKSALQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGGG 531
AFESMKASS RLLGGEPEEKS LQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVR VATSIYLATLSATLFVALSPYASVP RGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGGG
Sbjct: 4 AFESMKASSMRLLGGEPEEKSTLQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGLRGGG 180
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: A0A835Z2J1_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J1_9STRA) HSP 1 Score: 198 bits (503), Expect = 2.000e-57 Identity = 96/169 (56.80%), Postives = 129/169 (76.33%), Query Frame = 1
Query: 1 AFESMKASSRRLLGGEPEE-KSALQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAG 504
A+ES++ S+RRLLG E K+ +E+EE VCS CPSL+++ RLIG+G CL +GF LTFG+LFR+ +L+ GNP PFV+ +S+G+ ++IC+SFFL GPW QIKKMF P RVVAT +Y+ TL T VAL+P +P R LL+ LVV QF+S++WY LSY+PFAR + AG
Sbjct: 21 AYESVRVSTRRLLGQEEAPLKTRAEELEEYVCSFCPSLTYKQRLIGFGVCLTLGFILTFGALFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAP--RMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAG 187
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: F0YE90_AURAN (Vesicle transport protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE90_AURAN) HSP 1 Score: 163 bits (412), Expect = 2.350e-44 Identity = 78/160 (48.75%), Postives = 108/160 (67.50%), Query Frame = 1
Query: 19 ASSRRLLGGEPEEKSALQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRGILLLCLVVAQFLSYVWYTLSYVPFARRFM 498
AS+R LL GEP ++ +++EE C CP LSW+ RLIG+ C A+G + GS R+ +L+ GNP+PF + +SLG+ + ICSSFFL GP+KQ K M P RV+AT+ YL + ATLFVAL A +P R L++ LV Q ++ WY +SY+PFAR F+
Sbjct: 2 ASTRSLLTGEPRPQTVAEQVEEECCKACPRLSWKQRLIGFSLCFALGVVVELGSFMRIVELVGGNPKPFAVTYSLGNVIAICSSFFLAGPYKQCKSMLAPTRVIATATYLVAIGATLFVALFD-ARIPARAGLIILLVCVQTIALFWYMISYIPFARDFV 160
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: A0A7S3JV88_9STRA (Vesicle transport protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV88_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.640e-36 Identity = 67/154 (43.51%), Postives = 110/154 (71.43%), Query Frame = 1
Query: 46 EPEEKSALQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRG---ILLLCLVVAQFLSYVWYTLSYVPFARRFM 498
E + K+A +E E+A+CS+CP L+++ R+ GY AC V FCL+ GS R+ +L+ GNP PFV++++LG+ + I S FL+GP Q KKM++P R +ATS+YL T+ T+FVA Y +P G I+++C+ + Q+++ +WYT+S++P+AR ++
Sbjct: 12 EEKPKTAAEEFEDALCSICPQLTYQQRIGGYIACFFVSFCLSIGSFTRLVELVKGNPAPFVVFYTLGNVMAIIGSLFLSGPRAQCKKMWDPTRRIATSVYLLTIFFTIFVAF--YEGIPDDGRIGIIIMCIFI-QWIAMLWYTISFIPYARDYV 162
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: A0A5D6Y7U4_9STRA (Vesicle transport protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7U4_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.340e-29 Identity = 63/155 (40.65%), Postives = 100/155 (64.52%), Query Frame = 1
Query: 28 RRLLGGEPEEKSALQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRGILLLCLVVAQFLSYVWYTLSYVPFARR 492
++LL E +++ A E + +VCPSL+++ R+IG C +GF ++ GS FR+A+L+ G+P PF + +++G+ L++ SS F GP KQ++ MF+ R + +Y+ + TL + SP VP R L+L V+ QFL+ VWYTLSYVP+ RR
Sbjct: 10 QKLLDPESQKREAGGSFREELGTVCPSLTYQERVIGCVTCFTLGFLISLGSTFRLAKLVNGHPGPFAMAYTIGNLLSLASSMFFVGPCKQLQTMFHRKRRGSALVYIVFIGLTLALCFSP--RVPHRVALVLVCVLTQFLALVWYTLSYVPYGRR 162
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: A0A8J2SX58_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX58_9STRA) HSP 1 Score: 122 bits (307), Expect = 3.470e-29 Identity = 66/160 (41.25%), Postives = 102/160 (63.75%), Query Frame = 1
Query: 28 RRLLGGEPEEKSALQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRG---ILLLCLVVAQFLSYVWYTLSYVPFARRFM 498
R+ +G E ++ Q ++E+ CP LS+ RL GY C+++GF LT GSL R+ +LL G P+ FV+YF+ G+ I S FFL+GP KKM +P R +AT+ YL T+ T FV Y +P G I++LC+ + Q+++ +WYT+S++PFAR ++
Sbjct: 5 RKAVGIEKKQTVTDQILDES----CPKLSYNQRLTGYVLCMSIGFILTMGSLVRLKELLHGEPKNFVIYFTFGNLCAIASCFFLSGPKSHCKKMIDPTRRIATAFYLITIFFTFFVVF--YEKIPDDGRVGIIILCVFI-QWIAMLWYTISFIPFARDWV 157
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: A0A2D4BV73_PYTIN (Vesicle transport protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV73_PYTIN) HSP 1 Score: 117 bits (294), Expect = 2.250e-27 Identity = 59/140 (42.14%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 79 EEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRGILLLCLVVAQFLSYVWYTLSYVPFARRFM 498
+E V S+CPSLS+ R+IG+ C +GF L+FGS FR+A+L+ GNP PF + +++G+ L++ SS F GP KQ++ MF R + IYL+ + TL + + +P R L++ V+ QF + VWYTLSY+P+ R+ +
Sbjct: 24 KEEVNSICPSLSYHERVIGFLTCFLLGFLLSFGSTFRLAKLVHGNPGPFAIAYTIGNLLSLGSSMFFVGPCKQVETMFRKKRRGSAIIYLSFIVVTLVLCFAR--DMPHRFGLVMISVLCQFAALVWYTLSYIPYGRQMV 161
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: A0A662WFW4_9STRA (Vesicle transport protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WFW4_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.320e-25 Identity = 55/139 (39.57%), Postives = 92/139 (66.19%), Query Frame = 1
Query: 82 EAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRGILLLCLVVAQFLSYVWYTLSYVPFARRFM 498
E + ++CPSLS++ R+IG C +GF L+ GS FR+A+L+ GNP PF + +++G+ L+I + F GP KQ++ MF+ R + ++Y+ + TL + SP+ + R +L+L V+ QF++ +WYTLSYVP+ R +
Sbjct: 32 EGLNTLCPSLSYQERVIGCVTCFMLGFLLSLGSTFRLAKLVHGNPAPFAIAYTIGNVLSIGCTTFFVGPCKQVQTMFHSKRRWSAAVYVLFIFVTLGLCFSPH--IHHRVLLVLLSVLVQFVALIWYTLSYVPYGRSIV 168
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: A0A1Z5KRX6_FISSO (Vesicle transport protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRX6_FISSO) HSP 1 Score: 113 bits (282), Expect = 1.390e-25 Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = 1
Query: 91 CSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGN-PRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGF 507
CS P ++WR RL+G C+ G+ L+ GS +R+ L+ + P PFVL ++G+ + + SFFLTGP Q K M+ R +AT +YL +L TLFVA P G LL L++ Q++S WYTLSYVPFA + F
Sbjct: 41 CSCFPEMTWRERLLGCVTCMLCGYMLSIGSFWRIKDLVINHDPLPFVLNATIGNIIALAGSFFLTGPKAQWKNMWLEKRRIATGLYLGSLFLTLFVAFLPIPGP--EGFYLLLLMLCQYISITWYTLSYVPFAHDIIVSF 178
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Match: F0Y3C0_AURAN (Vesicle transport protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3C0_AURAN) HSP 1 Score: 110 bits (275), Expect = 3.400e-25 Identity = 53/137 (38.69%), Postives = 89/137 (64.96%), Query Frame = 1
Query: 97 VCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRVVATSIYLATLSATLFVALSPYASVPCRG---ILLLCLVVAQFLSYVWYTLSYVPFARRFM 498
+CP L+++ R+ GY C + F L+ GS R+A L+ GNP PFV++++LG+ + I S FL+GP Q K M++ R+VAT Y ++ T+F Y +P G I+++C+ V Q+++ +WYT+S++PFAR ++
Sbjct: 1 LCPKLTYKQRIGGYLTCFGLAFVLSIGSWVRLADLIKGNPTPFVVFYTLGNLMGIAGSLFLSGPKAQCKAMWDRTRIVATLFYFTSIIMTIFCCY--YHGIPDDGRVGIIIMCVFV-QWIAMIWYTISFIPFARDYV 134 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig836.19727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig836.19727.1 >prot_Ecto-sp13_S_contig836.19727.1 ID=prot_Ecto-sp13_S_contig836.19727.1|Name=mRNA_Ecto-sp13_S_contig836.19727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp MKASSRRLLGGEPEEKSALQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFback to top mRNA from alignment at Ecto-sp13_S_contig836:16784..18759- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig836.19727.1 ID=mRNA_Ecto-sp13_S_contig836.19727.1|Name=mRNA_Ecto-sp13_S_contig836.19727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1976bp|location=Sequence derived from alignment at Ecto-sp13_S_contig836:16784..18759- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig836:16784..18759- >mRNA_Ecto-sp13_S_contig836.19727.1 ID=mRNA_Ecto-sp13_S_contig836.19727.1|Name=mRNA_Ecto-sp13_S_contig836.19727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig836:16784..18759- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |