prot_Ecto-sp13_S_contig836.19725.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig836.19725.1
Unique Nameprot_Ecto-sp13_S_contig836.19725.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length273
Homology
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BLAST of mRNA_Ecto-sp13_S_contig836.19725.1 vs. uniprot
Match: D8LG11_ECTSI (SKA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG11_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 1.260e-171
Identity = 253/272 (93.01%), Postives = 261/272 (95.96%), Query Frame = 0 
Query:    1 MVALESTDILKQLEINFDLVLNDLEFASHQLDSRMKDATSRADVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTLIENYNVMLGLYARLGVAPDPEWVATAAGVESFLPAPQDSGAVPESFVSGGDERVGVGSAVEEDATRTSTVLHSGNPEMLASRVEERVVDQSPSVIFEEDFLAIHANTRGRSKLQDVRKVYAKIREDFEAKKSRGRPGCKPAPITKRELDAAGLKVFGLTGDCVLNTLRAMGLIAVHKGSVAMAS 272
            MVALESTDILKQLEINFDL LNDLEFASHQLDSRMKDAT RA+VSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTT+IENYNVM+GLYARLGVAPDPEWVATAA VESFLPAP+DSGAV +SFVSGGDE  GVGSAVEEDAT+ STVLHSGNPEM ASRVEERVV+QS SVIFEEDFLAIHANTRGRSKLQDVRKVYAK+REDFEAKKSRGRPGCKPAPITKRELDAAGLKVFGLTGDCVLN LRAMGLI VHKGSVAMAS
Sbjct:    1 MVALESTDILKQLEINFDLALNDLEFASHQLDSRMKDAT-RANVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTVIENYNVMVGLYARLGVAPDPEWVATAADVESFLPAPRDSGAVSDSFVSGGDEGEGVGSAVEEDATQASTVLHSGNPEMSASRVEERVVEQSFSVIFEEDFLAIHANTRGRSKLQDVRKVYAKVREDFEAKKSRGRPGCKPAPITKRELDAAGLKVFGLTGDCVLNALRAMGLITVHKGSVAMAS 271
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BLAST of mRNA_Ecto-sp13_S_contig836.19725.1 vs. uniprot
Match: A0A835ZK67_9STRA (SKA2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK67_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.310e-18
Identity = 77/258 (29.84%), Postives = 123/258 (47.67%), Query Frame = 0 
Query:   10 LKQLEINFDLVLNDLEFASHQLDSRMKDATSRADVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTLIENYNVMLGLYARLGVAPDPEWVATAAGVESFLPAPQDSGAVPESFVSGGDERVGVGSAVEEDATRTSTVLHSGNPEMLASRVEE-RVVDQSPSVIFEEDFLAIHANTRGRSKLQDVRKVYAKIREDFEAKKSRGRPGCKPAP-----ITKRELDAAGLKVFGLTGDCVLNTLRAMGLI 261
            ++ +E+ F  + N+L++ASH+LD+ M  A +     +PD++ L  R+RA++     L + + +  A  +     L+  L+ + + M   YARLG   D EW A A  V   L   Q         +S GD   GV  A +     ++        E+ ASR  + R        + +  FLA+  + RGR +L DV+  Y+ + +   AK  RG+     A       T++EL   G KV G TG+CVL TL+ + LI
Sbjct:    5 IQNVELEFKRIANNLQYASHRLDTAMAKAAASGG-GVPDVYRLVRRLRALQRTAAQLEEQSQKERARSEACAAELSALLLSSADGMAKAYARLGCEVDGEWAAAADAVRMQLQQQQ---------LSDGDGG-GVDDAQQRGVDASAVAAEGAYAEVGASRENDCRRNGSGGGGVAQAQFLALPTSIRGRCRLDDVQHAYSWLLQHCSAK-PRGQQKASNANAQGFGFTRQELAGHGCKVAGHTGECVLKTLKQLKLI 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig836.19725.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG11_ECTSI1.260e-17193.01SKA2 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZK67_9STRA1.310e-1829.84SKA2 domain-containing protein n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF11362DUF3161coord: 184..263
e-value: 2.8E-6
score: 27.2
IPR042091Ska2, N-terminalPFAMPF16740SKA2coord: 10..110
e-value: 3.7E-17
score: 62.1
IPR026762Spindle and kinetochore-associated protein 2PANTHERPTHR32017FAMILY NOT NAMEDcoord: 11..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig836contigEcto-sp13_S_contig836:1528..7411 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig836.19725.1mRNA_Ecto-sp13_S_contig836.19725.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig836 1528..7965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig836.19725.1 ID=prot_Ecto-sp13_S_contig836.19725.1|Name=mRNA_Ecto-sp13_S_contig836.19725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp
MVALESTDILKQLEINFDLVLNDLEFASHQLDSRMKDATSRADVSIPDLH
TLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTLIENYNVMLGLYA
RLGVAPDPEWVATAAGVESFLPAPQDSGAVPESFVSGGDERVGVGSAVEE
DATRTSTVLHSGNPEMLASRVEERVVDQSPSVIFEEDFLAIHANTRGRSK
LQDVRKVYAKIREDFEAKKSRGRPGCKPAPITKRELDAAGLKVFGLTGDC
VLNTLRAMGLIAVHKGSVAMAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042091Ska2_N
IPR026762Ska2