prot_Ecto-sp13_S_contig8359.19724.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8359.19724.1
Unique Nameprot_Ecto-sp13_S_contig8359.19724.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length178
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8359.19724.1 vs. uniprot
Match: D7G286_ECTSI (Centrin-1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G286_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 4.070e-72
Identity = 131/142 (92.25%), Postives = 132/142 (92.96%), Query Frame = 0 
Query:    1 AVPTAEEARATVARLAFQAFDRDGNGVLDVSDLADLLGVLRRIARRSPSARTAAGSGAAAAEYGLEAAMVAMDEDHSGQVDIDEFMRWFNGYDAHDGANRSTAPGELSQRGRESEEPLYVKVLGVRNGATGRTNAQEEREAN 142
            AVPT EEA ATVARLAFQAFDRDGNG LDVSDLADLLGVLRRIA R PSARTA GSGAAAA YGLEAAM AMDEDHSGQVDIDEFMRWFNGYDAHDGANRSTAPGEL QRGRESEEPLYVKVLGVRNGATG TNAQE+REAN
Sbjct: 1087 AVPTTEEATATVARLAFQAFDRDGNGELDVSDLADLLGVLRRIAGRPPSARTALGSGAAAAGYGLEAAMFAMDEDHSGQVDIDEFMRWFNGYDAHDGANRSTAPGELPQRGRESEEPLYVKVLGVRNGATGGTNAQEDREAN 1228
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8359.19724.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G286_ECTSI4.070e-7292.25Centrin-1, putative n=1 Tax=Ectocarpus siliculosus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 12..40
e-value: 0.82
score: 18.4
coord: 64..92
e-value: 0.83
score: 18.4
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 14..89
e-value: 3.9E-9
score: 36.8
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 8..43
score: 10.636
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 65..95
score: 9.771
NoneNo IPR availableGENE3D1.10.238.10coord: 2..102
e-value: 2.4E-12
score: 49.1
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 73..85
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 21..33
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 12..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8359contigEcto-sp13_S_contig8359:823..2087 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8359.19724.1mRNA_Ecto-sp13_S_contig8359.19724.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8359 822..2087 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8359.19724.1 ID=prot_Ecto-sp13_S_contig8359.19724.1|Name=mRNA_Ecto-sp13_S_contig8359.19724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
AVPTAEEARATVARLAFQAFDRDGNGVLDVSDLADLLGVLRRIARRSPSA
RTAAGSGAAAAEYGLEAAMVAMDEDHSGQVDIDEFMRWFNGYDAHDGANR
STAPGELSQRGRESEEPLYVKVLGVRNGATGRTNAQEEREANHKEDADDG
GNGSDSSGGGSDSASLPSVSVSTADGDD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair