mRNA_Ecto-sp13_S_contig8359.19724.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8359.19724.1
Unique NamemRNA_Ecto-sp13_S_contig8359.19724.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8359.19724.1 vs. uniprot
Match: D7G286_ECTSI (Centrin-1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G286_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 4.070e-72
Identity = 131/142 (92.25%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:    1 AVPTAEEARATVARLAFQAFDRDGNGVLDVSDLADLLGVLRRIARRSPSARTAAGSGAAAAEYGLEAAMVAMDEDHSGQVDIDEFMRWFNGYDAHDGANRSTAPGELSQRGRESEEPLYVKVLGVRNGATGRTNAQEEREAN 426
            AVPT EEA ATVARLAFQAFDRDGNG LDVSDLADLLGVLRRIA R PSARTA GSGAAAA YGLEAAM AMDEDHSGQVDIDEFMRWFNGYDAHDGANRSTAPGEL QRGRESEEPLYVKVLGVRNGATG TNAQE+REAN
Sbjct: 1087 AVPTTEEATATVARLAFQAFDRDGNGELDVSDLADLLGVLRRIAGRPPSARTALGSGAAAAGYGLEAAMFAMDEDHSGQVDIDEFMRWFNGYDAHDGANRSTAPGELPQRGRESEEPLYVKVLGVRNGATGGTNAQEDREAN 1228
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8359.19724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G286_ECTSI4.070e-7292.25Centrin-1, putative n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8359contigEcto-sp13_S_contig8359:822..2087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size537
Hectar predicted targeting categoryother localisation
Exons3
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464106.1069741-CDS-Ecto-sp13_S_contig8359:822..11191681464106.1069741-CDS-Ecto-sp13_S_contig8359:822..1119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8359 823..1119 -
1681464106.1185665-CDS-Ecto-sp13_S_contig8359:1270..14531681464106.1185665-CDS-Ecto-sp13_S_contig8359:1270..1453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8359 1271..1453 -
1681464106.1293979-CDS-Ecto-sp13_S_contig8359:2033..20871681464106.1293979-CDS-Ecto-sp13_S_contig8359:2033..2087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8359 2034..2087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8359.19724.1prot_Ecto-sp13_S_contig8359.19724.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8359 823..2087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8359.19724.1

>prot_Ecto-sp13_S_contig8359.19724.1 ID=prot_Ecto-sp13_S_contig8359.19724.1|Name=mRNA_Ecto-sp13_S_contig8359.19724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
AVPTAEEARATVARLAFQAFDRDGNGVLDVSDLADLLGVLRRIARRSPSA
RTAAGSGAAAAEYGLEAAMVAMDEDHSGQVDIDEFMRWFNGYDAHDGANR
STAPGELSQRGRESEEPLYVKVLGVRNGATGRTNAQEEREANHKEDADDG
GNGSDSSGGGSDSASLPSVSVSTADGDD
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mRNA from alignment at Ecto-sp13_S_contig8359:822..2087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8359.19724.1 ID=mRNA_Ecto-sp13_S_contig8359.19724.1|Name=mRNA_Ecto-sp13_S_contig8359.19724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1266bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8359:822..2087- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGTCCCAACGGCTGAGGAGGCAAGGGCGACCGTTGCGCGTCTAGCCTT
TCAGGTATGTACCCGGGGGCCGTCGGCCTTCTCCTATAGTTGCTACTTTG
AGTTGTGTTTCCCCTCATCCGCGCTAGGTGCGGAATGTGTTCGTTTGTCA
TAATACACTCTATTTGAAGTAGTTTTGCCGCGGGACGAAGGTGTGGACAA
AATAAGATTCTCGAGGGGACTTGTGGGTTTGCTCGTACGCAGATTTTAAG
GTCGGTGGTGGACGTTTAAATACCGACACGGGTAAGACTTGCTTCTTACA
GGCTCACGCATAGGTGCAGTAAGAGATGGGGGGTCGTGGATGGGGCTTGC
ATGACTAGAAAAATGAACGGAATCTCGCCTCTTTGCCAGAGAACAGAACG
CCGTATGTCGATTTCGGGCGCTCCAAGATACCCAGAACGCTACACGTGAC
CTGCAATTCGCAGCAGAAACGGTTGTTCTCGAACCAATACCACCCCTAAG
CTTATCACAATGCTCTGTCCTCTCGAGGACGCGTGGTCGACGGTCGTAGA
ACTAAGGCATGCAAAACATGACTACGCCTCTTAGATCATCAAGTTCGAGT
CCCAAAATGACTCTTTCTCCACCGCGTAACGCAGGCTTTCGATCGAGACG
GGAACGGCGTACTCGATGTGTCCGACCTCGCGGATCTGCTGGGGGTGCTC
CGGCGGATCGCGCGAAGGTCGCCCTCCGCACGCACGGCCGCGGGTTCGGG
CGCTGCCGCAGCCGAGTACGGGCTTGAGGCAGCCATGGTTGCGATGGACG
AAGACCATAGCGGCCAGGTGCGGATTGAGATATAGCCAAGCCGTGATCAG
GTTCCATTGCTGTACGAGGCAACGGAGAAGTAGGAGCCCTGGCCGTCTCA
CCCCATCCCCTTCCCCCACTACTACTGTGCCGGGATTTCCCGTCCTGCCC
TTGACGGATTCCCTTCAGGTCGATATCGACGAGTTCATGCGGTGGTTCAA
TGGGTACGACGCACACGACGGGGCTAACCGGTCGACAGCACCCGGAGAAC
TATCCCAGCGGGGGAGGGAGTCGGAGGAGCCGCTCTACGTCAAAGTCCTC
GGCGTGCGCAACGGCGCGACCGGCAGGACTAACGCGCAAGAAGAACGCGA
AGCGAACCACAAAGAGGACGCAGACGACGGCGGTAACGGCAGCGACAGTA
GCGGTGGTGGTAGCGACTCTGCGTCCTTACCATCGGTTTCGGTGTCAACA
GCCGACGGAGATGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8359:822..2087-

>mRNA_Ecto-sp13_S_contig8359.19724.1 ID=mRNA_Ecto-sp13_S_contig8359.19724.1|Name=mRNA_Ecto-sp13_S_contig8359.19724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8359:822..2087- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGTCCCAACGGCTGAGGAGGCAAGGGCGACCGTTGCGCGTCTAGCCTT
TCAGGCTTTCGATCGAGACGGGAACGGCGTACTCGATGTGTCCGACCTCG
CGGATCTGCTGGGGGTGCTCCGGCGGATCGCGCGAAGGTCGCCCTCCGCA
CGCACGGCCGCGGGTTCGGGCGCTGCCGCAGCCGAGTACGGGCTTGAGGC
AGCCATGGTTGCGATGGACGAAGACCATAGCGGCCAGGTCGATATCGACG
AGTTCATGCGGTGGTTCAATGGGTACGACGCACACGACGGGGCTAACCGG
TCGACAGCACCCGGAGAACTATCCCAGCGGGGGAGGGAGTCGGAGGAGCC
GCTCTACGTCAAAGTCCTCGGCGTGCGCAACGGCGCGACCGGCAGGACTA
ACGCGCAAGAAGAACGCGAAGCGAACCACAAAGAGGACGCAGACGACGGC
GGTAACGGCAGCGACAGTAGCGGTGGTGGTAGCGACTCTGCGTCCTTACC
ATCGGTTTCGGTGTCAACAGCCGACGGAGATGAC
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