mRNA_Ecto-sp13_S_contig8356.19719.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8356.19719.1
Unique NamemRNA_Ecto-sp13_S_contig8356.19719.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8356.19719.1 vs. uniprot
Match: A0A6H5K438_9PHAE (Herpes_ori_bp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 5.630e-82
Identity = 179/494 (36.23%), Postives = 259/494 (52.43%), Query Frame = 2 
Query:   44 CGRTFWKTQAAMFKHAKKAQ-----ILIKFTPKLFTYFDSFCVFLEWFKKMRKICKQKKRPLEVYEILSSGMTMCFACDIEVYCPFNISNSDFERVQHTLKQRFIQVYNKYGDGSNVVFMENHRASSYKPEGSDTAKKMKKLSFHALGLSEIFNEMHTTCEM---------------------------------------NRALRSIYGQKDANSGAFKLSKGSEHVLLQNCFVTRHFCDEVTLYTLPEDLQCVETSAKPAKQKRVPRNTPKR---HRTDGTTADTTATELRIQKYLEQIFGDKVTVKYQGLYNNRASYRADGHR-HCPRCKQEHFRNGAYINDLGGGNFYYKCLSNPEDKASQKLVYIDMNTVESGEAVERCTTTDETTGYLESFTHVTKKVISISGPMGCGKTYQIKKFLECFPPGTRILFLTCRKGMARSLAGRFQGFVVYLDETNQPLQIQEYEFVNRIT-TDYPIIVIDELRSMLTSA 1378
            CG+ F++ Q  M             I +      FT+F++F  F EW+ + ++ C + +R   VYEIL +G  MCF  D+EVYCP     +  +++++T+K  F + Y KY D  N+V  +N R S +K +G +  + M K+S H LG SEIFNE+HT+CEM                                       NR +  I   K    GAF+ ++ S+HV +++C VT+ F  +V+ + LP+ L+  +        K+  RN P R   HR    T +T+ TEL +  YL   FGD VTV + G+Y  + SY   GHR  CP C+  H  NGA++  LG   F YKC+ NP    + +L   + + V+  E  E      E   YL SFTHV  KVISI  PM  GKT+QI++ ++   P  R+L +TCR+GMA +L GRF GF  Y D  N+  QI EYE ++R++   Y +I++DELRS L SA
Sbjct:    5 CGKWFYRKQDEMLASVPAEDDVAIYIKVMVDRFYFTWFETFDEFWEWYFRAQEECNRNQRAFSVYEILRTGRDMCFIADLEVYCPPETHWTQLQKIEYTIKNLFREAYGKYADAENLVITQNSRMSEHKEKGGEK-EPMYKISLHFLGRSEIFNEIHTSCEMKALAEHVKTALVADMQPLVAKHDIVLPDGNVLDLGIYTRNRPMSLIGTAKKLGGGAFERTEESKHVPIRSCIVTQQFTRDVSYFELPDGLEVTK--------KKTKRNIPTRRLVHRP--RTRETSETELLLLNYLCTKFGDSVTVTHNGVYGGQDSYAVRGHRAFCPCCEDSHDSNGAFLTHLGELFFRYKCM-NPHAPRTVELDLREFHCVQEPEGPEE----QEKPRYLPSFTHVKSKVISICAPMRSGKTFQIERDIDHKDP-PRVLVITCRRGMAATLTGRFSGFTNYQDGINKDRQIIEYESLHRLSWIKYDMIIMDELRSTLNSA 481
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BLAST of mRNA_Ecto-sp13_S_contig8356.19719.1 vs. uniprot
Match: B2KWI9_ECTSI (Origin-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI9_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.360e-27
Identity = 136/514 (26.46%), Postives = 205/514 (39.88%), Query Frame = 2 
Query:   41 ICGRTFWKTQAAMFKHAK--KAQILIKFTPKLFTYFDSFCVFLEWFKKMRKICKQKKRPLEVYEILSSGMTMCFACDIEVYCPFNISNSDFERVQHTLKQRFIQVYNKYG---DGSNVVFMENHRASSYKPEGSDTAKKMKKLSFHALGLSEIFN-------------EMHTTCEM----------------------------NRALRSIYGQKDANSGAFKLSKGSEHVLLQNCFVTRHFCDEVTLYTLPEDLQCVETSAKPAKQKRVPRNTPKRHRTDGTTADTTATELRIQKYLEQIFG-DKVTVKYQGLYNNRA--SYRADGH-RHCPRCKQEHFRNGAYINDLGGGNFYYKCLSNPEDKASQKLVYIDMNTVESGEAVERCTTTDETTGYLESFTHVTKKVISISGPMGCGKTYQIKKFLECF------------------PPGTRILFLTCRKGMARSLAGRFQGFVVYLDETNQPLQIQEYEFVNRITTDYPIIVIDELRSMLTSA 1378
            I G+ F   Q       K  K   +IK+   +F  F S    L W+    K  ++  +P E YE++       F  DIEVYCP      D      +LK R +          D   +++ E+HR +          K   K+SFH +G S +F              E++T  E                             NR++R     K   S  F    GSE   L++ F+    C ++ +     D   V  + K +KQ+R       + R    T   +  E +IQ YL      D + V + GLY  +   SYR DG  R C  C + H RNGA++ +L      Y C+S+   +    ++ I    +++ + ++     D   G +     +  K I+I   M  GKTY+  + +E                    P   R+L +TCR  MA  L  RF+GF  Y D  +    I EYE ++R    Y II+IDE+RS+LTSA
Sbjct:   11 INGKKFISNQDMSLPAGKGHKKVFMIKWGQYMFACFTSRKEQLAWWTNTHKKMQKSGKPFEAYEVIYGEFPCSFFADIEVYCPLKADYID------SLKARIVSDVTSRCEELDEHLLLWSEDHRET----------KGFYKISFHVVGGSRLFRGIVTNGPMARLAAEVNTISEKIFEDYPDISSSPREQREMSVLDMGVYTKNRSMRGPKASKGVGSQGFLPCAGSEGGDLEDFFI----CKDIPMDDY-RDYDFVPNTIKESKQQRAIAVDKIQTRKVAPTTAQSDLESQIQCYLRATQNTDTIKVVFNGLYGAQQLPSYRVDGSGRSCHVCDKVHGRNGAFVKELPTKALLYTCMSSMRSE----ILPIFGRVLKTAKVLDTINPED---GRVPDIRTIKDKCINIIAGMNTGKTYRANQLVEALGETLAAKTRVDDPGKSMPPRKLRVLIVTCRVSMASGLDFRFKGFDQYTDTIDSDRLIIEYESLHRTDRLYDIIIIDEVRSVLTSA 496
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8356.19719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K438_9PHAE5.630e-8236.23Herpes_ori_bp domain-containing protein n=1 Tax=Ec... [more]
B2KWI9_ECTSI5.360e-2726.46Origin-binding protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8356contigEcto-sp13_S_contig8356:3129..4623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1378
Hectar predicted targeting categoryother localisation
Exons2
Cds size1353
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464105.8169758-CDS-Ecto-sp13_S_contig8356:3128..39931681464105.8169758-CDS-Ecto-sp13_S_contig8356:3128..3993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8356 3129..3993 -
1681464105.8291616-CDS-Ecto-sp13_S_contig8356:4110..45981681464105.8291616-CDS-Ecto-sp13_S_contig8356:4110..4598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8356 4111..4598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464105.8403149-UTR-Ecto-sp13_S_contig8356:4598..46231681464105.8403149-UTR-Ecto-sp13_S_contig8356:4598..4623Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8356 4599..4623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8356.19719.1prot_Ecto-sp13_S_contig8356.19719.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8356 3129..4598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8356.19719.1

>prot_Ecto-sp13_S_contig8356.19719.1 ID=prot_Ecto-sp13_S_contig8356.19719.1|Name=mRNA_Ecto-sp13_S_contig8356.19719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=451bp
MSTINICGRTFWKTQAAMFKHAKKAQILIKFTPKLFTYFDSFCVFLEWFK
KMRKICKQKKRPLEVYEILSSGMTMCFACDIEVYCPFNISNSDFERVQHT
LKQRFIQVYNKYGDGSNVVFMENHRASSYKPEGSDTAKKMKKLSFHALGL
SEIFNEMHTTCEMNRALRSIYGQKDANSGAFKLSKGSEHVLLQNCFVTRH
FCDEVTLYTLPEDLQCVETSAKPAKQKRVPRNTPKRHRTDGTTADTTATE
LRIQKYLEQIFGDKVTVKYQGLYNNRASYRADGHRHCPRCKQEHFRNGAY
INDLGGGNFYYKCLSNPEDKASQKLVYIDMNTVESGEAVERCTTTDETTG
YLESFTHVTKKVISISGPMGCGKTYQIKKFLECFPPGTRILFLTCRKGMA
RSLAGRFQGFVVYLDETNQPLQIQEYEFVNRITTDYPIIVIDELRSMLTS
A
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mRNA from alignment at Ecto-sp13_S_contig8356:3129..4623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8356.19719.1 ID=mRNA_Ecto-sp13_S_contig8356.19719.1|Name=mRNA_Ecto-sp13_S_contig8356.19719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8356:3129..4623- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTTTTTCAGTGTATCACAGTAACATGTCTACCATCAATATTTGTGGCC
GTACGTTTTGGAAGACACAGGCGGCCATGTTCAAGCATGCTAAAAAGGCG
CAAATTTTGATCAAGTTCACCCCTAAACTGTTCACATATTTTGACAGTTT
TTGTGTTTTCTTGGAATGGTTCAAAAAGATGCGGAAGATTTGTAAGCAGA
AAAAGCGGCCGTTGGAGGTTTACGAAATCTTGTCTTCCGGGATGACCATG
TGTTTTGCATGTGATATCGAGGTGTACTGCCCCTTCAACATTTCAAACTC
GGACTTTGAAAGAGTCCAACACACGCTAAAGCAACGATTTATCCAGGTGT
ACAACAAGTACGGCGACGGTAGTAATGTTGTCTTCATGGAGAATCATCGA
GCCAGTTCGTACAAACCGGAAGGATCGGATACCGCCAAAAAAATGAAGAA
ACTCTCTTTTCATGCCCTAGGACTGTCAGAAATATTCAACGAAATGCACA
CAACATGTGAAATGCAAAACCTGGCACGGGTCGTCAACATTGACTTGGTT
GAAGCACTGGCGGGTGTGATGAGTAAGCATCAAATAATAGCCCCGCATGA
TAACATCTTGGATATGAAAATATATACCAGGAATAGGGCCTTGCGTTCAA
TTTATGGACAGAAAGACGCGAATTCCGGGGCGTTCAAACTATCCAAGGGA
TCGGAGCACGTTTTGCTACAAAATTGTTTTGTCACACGGCACTTTTGTGA
CGAGGTGACACTGTACACCTTGCCCGAGGATCTCCAGTGTGTTGAAACTT
CAGCGAAACCGGCGAAACAGAAGCGCGTACCAAGGAATACACCAAAAAGG
CACAGAACTGACGGAACAACAGCAGACACGACGGCAACAGAACTTCGTAT
TCAAAAGTACCTTGAGCAAATATTTGGCGACAAGGTCACCGTGAAATACC
AAGGTCTGTACAACAACAGGGCCTCGTATAGGGCGGACGGGCATCGGCAC
TGCCCTAGATGTAAGCAAGAACACTTCAGAAACGGGGCATATATCAACGA
TCTCGGAGGCGGGAACTTCTACTACAAATGCTTGTCCAATCCGGAAGACA
AAGCATCTCAAAAGCTCGTGTACATCGACATGAACACGGTAGAGAGTGGT
GAAGCTGTAGAAAGATGTACCACCACTGACGAAACTACGGGATATCTTGA
ATCGTTCACCCATGTGACGAAGAAGGTAATATCGATAAGTGGCCCTATGG
GCTGTGGGAAAACGTATCAGATCAAGAAATTCTTGGAATGTTTTCCACCC
GGAACACGTATCCTTTTTTTAACGTGTAGAAAAGGAATGGCGAGATCCCT
GGCGGGCAGATTCCAGGGTTTTGTAGTATACTTGGATGAGACGAACCAAC
CGCTGCAAATACAGGAGTACGAATTCGTAAATCGTATCACAACGGACTAT
CCTATAATCGTCATAGACGAGCTTCGCTCGATGCTGACATCGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8356:3129..4623-

>mRNA_Ecto-sp13_S_contig8356.19719.1 ID=mRNA_Ecto-sp13_S_contig8356.19719.1|Name=mRNA_Ecto-sp13_S_contig8356.19719.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8356:3129..4623- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTACCATCAATATTTGTGGCCGTACGTTTTGGAAGACACAGGCGGC
CATGTTCAAGCATGCTAAAAAGGCGCAAATTTTGATCAAGTTCACCCCTA
AACTGTTCACATATTTTGACAGTTTTTGTGTTTTCTTGGAATGGTTCAAA
AAGATGCGGAAGATTTGTAAGCAGAAAAAGCGGCCGTTGGAGGTTTACGA
AATCTTGTCTTCCGGGATGACCATGTGTTTTGCATGTGATATCGAGGTGT
ACTGCCCCTTCAACATTTCAAACTCGGACTTTGAAAGAGTCCAACACACG
CTAAAGCAACGATTTATCCAGGTGTACAACAAGTACGGCGACGGTAGTAA
TGTTGTCTTCATGGAGAATCATCGAGCCAGTTCGTACAAACCGGAAGGAT
CGGATACCGCCAAAAAAATGAAGAAACTCTCTTTTCATGCCCTAGGACTG
TCAGAAATATTCAACGAAATGCACACAACATGTGAAATGAATAGGGCCTT
GCGTTCAATTTATGGACAGAAAGACGCGAATTCCGGGGCGTTCAAACTAT
CCAAGGGATCGGAGCACGTTTTGCTACAAAATTGTTTTGTCACACGGCAC
TTTTGTGACGAGGTGACACTGTACACCTTGCCCGAGGATCTCCAGTGTGT
TGAAACTTCAGCGAAACCGGCGAAACAGAAGCGCGTACCAAGGAATACAC
CAAAAAGGCACAGAACTGACGGAACAACAGCAGACACGACGGCAACAGAA
CTTCGTATTCAAAAGTACCTTGAGCAAATATTTGGCGACAAGGTCACCGT
GAAATACCAAGGTCTGTACAACAACAGGGCCTCGTATAGGGCGGACGGGC
ATCGGCACTGCCCTAGATGTAAGCAAGAACACTTCAGAAACGGGGCATAT
ATCAACGATCTCGGAGGCGGGAACTTCTACTACAAATGCTTGTCCAATCC
GGAAGACAAAGCATCTCAAAAGCTCGTGTACATCGACATGAACACGGTAG
AGAGTGGTGAAGCTGTAGAAAGATGTACCACCACTGACGAAACTACGGGA
TATCTTGAATCGTTCACCCATGTGACGAAGAAGGTAATATCGATAAGTGG
CCCTATGGGCTGTGGGAAAACGTATCAGATCAAGAAATTCTTGGAATGTT
TTCCACCCGGAACACGTATCCTTTTTTTAACGTGTAGAAAAGGAATGGCG
AGATCCCTGGCGGGCAGATTCCAGGGTTTTGTAGTATACTTGGATGAGAC
GAACCAACCGCTGCAAATACAGGAGTACGAATTCGTAAATCGTATCACAA
CGGACTATCCTATAATCGTCATAGACGAGCTTCGCTCGATGCTGACATCG
GCC
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