mRNA_Ecto-sp13_S_contig8356.19718.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8356.19718.1
Unique NamemRNA_Ecto-sp13_S_contig8356.19718.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8356.19718.1 vs. uniprot
Match: A0A6H5K438_9PHAE (Herpes_ori_bp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.350e-36
Identity = 74/149 (49.66%), Postives = 98/149 (65.77%), Query Frame = -2 
Query:   13 DLRDGKKVMVCCGSSRELKSLQSKALEIIPAPKIGIYYADCEKQHEIEDVHKYWPEYNFIGFTSTITVSVDYSGPIDTVYVAPCVAACGPVPMNQMRGRPRNNVSGTVIVLVGENDGDNIVPLDVDLDALKNQEENIVRNMRSTMTRFM 459
            DLR GK++ VCCGS+ ELK+++  AL+I+   K+GIYYA+  +Q EI DV  +WP+Y  IG TSTITVSVDY+GPID VY++P    CGP  MNQM+ R RN  SG V+V V       + PL  D+  L  +E N + N R+ +T  M
Sbjct:  544 DLRAGKRIGVCCGSALELKTIEKLALDIVHKEKLGIYYANSPQQAEIADVSAHWPKYKLIGLTSTITVSVDYTGPIDRVYISPSQRGCGPRDMNQMKSRFRNITSGIVVVKVPNPMRAPLEPLIADMAELHTEEMNRIMNRRTYITGVM 692
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BLAST of mRNA_Ecto-sp13_S_contig8356.19718.1 vs. uniprot
Match: D7FL23_ECTSI (Origin-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL23_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.470e-13
Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = -2 
Query:  115 DLRDGKKVMVCCGSSRELKSLQSKALEIIPAPKIGIYYADCEKQHEIEDVHKYWPEYNFIGFTSTITVSVDYSGPIDTVYVAPCVAACGPVPMNQMRGRPRNNVSGTVIVLVGEN 459
            DLR+G +V+ C  S++ L+         +    +  Y+A  + + E+ DV++YW +Y F G+TST+TVS+D++ P+  VY+ P   +  P    Q  GR R+ ++G VI+ +  N
Sbjct:  133 DLRNGHRVVACVASAKMLRGCMKHLKTFMDESLVTGYFAAADNKDELFDVNQYWGKYKFTGYTSTVTVSLDFAEPVYRVYIFPNKHSFRPREGLQGSGRSRDVITGEVILAMDSN 247
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8356.19718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K438_9PHAE4.350e-3649.66Herpes_ori_bp domain-containing protein n=1 Tax=Ec... [more]
D7FL23_ECTSI7.470e-1333.04Origin-binding protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8356contigEcto-sp13_S_contig8356:2427..2889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size465
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464105.7355855-CDS-Ecto-sp13_S_contig8356:2426..28191681464105.7355855-CDS-Ecto-sp13_S_contig8356:2426..2819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8356 2427..2819 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464105.7451518-UTR-Ecto-sp13_S_contig8356:2819..28891681464105.7451518-UTR-Ecto-sp13_S_contig8356:2819..2889Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8356 2820..2889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8356.19718.1prot_Ecto-sp13_S_contig8356.19718.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8356 2427..2819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8356.19718.1

>prot_Ecto-sp13_S_contig8356.19718.1 ID=prot_Ecto-sp13_S_contig8356.19718.1|Name=mRNA_Ecto-sp13_S_contig8356.19718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
VICVHEPCHCAPHVPYDILLLILQCIQVNIQWNDIITVVLANQYDHRTTY
VVPGTPTHLIHRYRTACRHTWCHIHCVYWAGIINRYRYGGCETNKIVLRP
VFVHIFNLMLFFTISIVNTNLGGGNYLKRF*
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mRNA from alignment at Ecto-sp13_S_contig8356:2427..2889+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8356.19718.1 ID=mRNA_Ecto-sp13_S_contig8356.19718.1|Name=mRNA_Ecto-sp13_S_contig8356.19718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=463bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8356:2427..2889+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCATATGCGTTCATGAACCGTGTCATTGTGCTCCTCATGTTCCTTACGA
TATTCTCCTCCTGATTCTTCAATGCATCCAGGTCAACATCCAGTGGAACG
ATATTATCACCGTCGTTCTCGCCAACCAGTACGATCACCGTACCACTTAC
GTTGTTCCGGGGACGCCCACGCATCTGATTCATAGGTACCGGACCGCATG
CCGCCACACATGGTGCCACATACACTGTGTCTATTGGGCCGGAATAATCA
ACCGATACCGTTATGGTGGATGTGAAACCAATAAAATTGTACTCCGGCCA
GTATTTGTGCACATCTTCAATCTCATGTTGTTTTTCACAATCAGCATAGT
AAATACCAATCTTGGGGGCGGGAATTATCTCAAGCGCTTTTGACTGAAGG
CTTTTCAATTCTCTCGATGAGCCACAGCACACCATAACCTTTTTCCCATC
CCTCAGATCGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8356:2427..2889+

>mRNA_Ecto-sp13_S_contig8356.19718.1 ID=mRNA_Ecto-sp13_S_contig8356.19718.1|Name=mRNA_Ecto-sp13_S_contig8356.19718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8356:2427..2889+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCATATGCGTTCATGAACCGTGTCATTGTGCTCCTCATGTTCCTTACGA
TATTCTCCTCCTGATTCTTCAATGCATCCAGGTCAACATCCAGTGGAACG
ATATTATCACCGTCGTTCTCGCCAACCAGTACGATCACCGTACCACTTAC
GTTGTTCCGGGGACGCCCACGCATCTGATTCATAGGTACCGGACCGCATG
CCGCCACACATGGTGCCACATACACTGTGTCTATTGGGCCGGAATAATCA
ACCGATACCGTTATGGTGGATGTGAAACCAATAAAATTGTACTCCGGCCA
GTATTTGTGCACATCTTCAATCTCATGTTGTTTTTCACAATCAGCATAGT
AAATACCAATCTTGGGGGCGGGAATTATCTCAAGCGCTTTTGA
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