mRNA_Ecto-sp13_S_contig8350.19712.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8350.19712.1
Unique NamemRNA_Ecto-sp13_S_contig8350.19712.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8350.19712.1 vs. uniprot
Match: D7FXW2_ECTSI (Phosphotransferase system component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW2_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 2.430e-66
Identity = 121/131 (92.37%), Postives = 123/131 (93.89%), Query Frame = 1 
Query:   16 SGKRDVISPSAPMSTSPPSPSAGSAPPSSVAAFTERTLPRCYDTDDAASFAKRVALVGSSGGGAAAQGQFDGPSLLRLAKKELGRAGIHLAAVQFVACAEPLDLAKPSSAATLWVAGTIEGDEALVVAAEG 408
            SGKRD+ISPS PMSTS PSP AGSAPPSSVAAFTERT  RCYDTDDAASFAKRVALVGSSGGGAAAQGQFDGP+LLRLAKKEL RAGIHLAAVQFVACAEPLDLA PSSAATLWVAGT EGDEALVVAAEG
Sbjct:  176 SGKRDMISPSVPMSTSSPSPPAGSAPPSSVAAFTERTSSRCYDTDDAASFAKRVALVGSSGGGAAAQGQFDGPALLRLAKKELERAGIHLAAVQFVACAEPLDLANPSSAATLWVAGTGEGDEALVVAAEG 306
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BLAST of mRNA_Ecto-sp13_S_contig8350.19712.1 vs. uniprot
Match: A0A813JUU5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JUU5_POLGL)

HSP 1 Score: 50.8 bits (120), Expect = 8.060e-5
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:  169 KRVALVGSSGGGAAAQGQFDGPSLLRLAKKE----LGRAGIHLAAVQFVACAEPLDLAKPSSAATLW 357
            +RVAL+GS+GGGAA  G  D P  LRLA +     +G  G  +A   FVAC  PLD A+P + ++LW
Sbjct:    8 RRVALIGSTGGGAATLGHGD-PDSLRLALERQLELVGGGGACVAEAVFVACDAPLDSARPDTPSSLW 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8350.19712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW2_ECTSI2.430e-6692.37Phosphotransferase system component n=1 Tax=Ectoca... [more]
A0A813JUU5_POLGL8.060e-547.76Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8350contigEcto-sp13_S_contig8350:6041..6763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score221.1
Seed ortholog evalue3.2e-55
Seed eggNOG ortholog2880.D7FXW2
Model size414
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E0F2@1,2S7VP@2759
Cds size414
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464105.2698903-CDS-Ecto-sp13_S_contig8350:6040..62361681464105.2698903-CDS-Ecto-sp13_S_contig8350:6040..6236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8350 6041..6236 -
1681464105.2808704-CDS-Ecto-sp13_S_contig8350:6545..67631681464105.2808704-CDS-Ecto-sp13_S_contig8350:6545..6763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8350 6546..6763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8350.19712.1prot_Ecto-sp13_S_contig8350.19712.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8350 6041..6763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8350.19712.1

>prot_Ecto-sp13_S_contig8350.19712.1 ID=prot_Ecto-sp13_S_contig8350.19712.1|Name=mRNA_Ecto-sp13_S_contig8350.19712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MTCCDSGKRDVISPSAPMSTSPPSPSAGSAPPSSVAAFTERTLPRCYDTD
DAASFAKRVALVGSSGGGAAAQGQFDGPSLLRLAKKELGRAGIHLAAVQF
VACAEPLDLAKPSSAATLWVAGTIEGDEALVVAAEGQ*
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mRNA from alignment at Ecto-sp13_S_contig8350:6041..6763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8350.19712.1 ID=mRNA_Ecto-sp13_S_contig8350.19712.1|Name=mRNA_Ecto-sp13_S_contig8350.19712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8350:6041..6763- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTGCTGTGACAGCGGCAAGAGGGATGTGATCTCCCCATCTGCACC
TATGTCTACATCTCCTCCATCTCCATCTGCTGGATCTGCACCTCCCTCGT
CAGTGGCGGCCTTCACCGAGAGGACATTACCCCGGTGCTACGATACTGAC
GATGCAGCCAGCTTTGCGAAGCGGGTTGCTCTCGTGGGGTCCAGTGGGGG
TGGGGCTGCGGCTCAAGGGTGAGGTCGGAAATCACACAGTGGGAATATAT
GGTAGATGGTAATTCGTTACGAAACTAAATGGGCTGCGGCTCTTGGAGAA
GTGATACAGAATTTTGCCATCACATCCCGCGAAGTTATTGCTGACGGAAA
CCGCAGTCGTGCTGCAGTTGTGGCAACAGTAGCAGTAGTAGCAGCAGCAG
CAGCAGCAGCAGTAGAAACGGGTAGAGCGCATCAAGCAATAACACAACCT
GCGCAGACAGCAACAACAACAATAATAGCAATATCAACAAAAATGTTTGT
GTGGTCGCAATGTCTCATCAAATCCAGGCAGTTCGACGGCCCGTCGCTTC
TGCGGCTGGCCAAGAAGGAACTAGGGAGAGCTGGCATCCACCTTGCCGCG
GTGCAGTTCGTTGCTTGCGCGGAGCCCCTCGATCTCGCTAAACCTAGCTC
TGCGGCAACGCTATGGGTGGCCGGGACGATCGAAGGCGATGAAGCTCTCG
TCGTTGCAGCAGAAGGCCAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8350:6041..6763-

>mRNA_Ecto-sp13_S_contig8350.19712.1 ID=mRNA_Ecto-sp13_S_contig8350.19712.1|Name=mRNA_Ecto-sp13_S_contig8350.19712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8350:6041..6763- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTGCTGTGACAGCGGCAAGAGGGATGTGATCTCCCCATCTGCACC
TATGTCTACATCTCCTCCATCTCCATCTGCTGGATCTGCACCTCCCTCGT
CAGTGGCGGCCTTCACCGAGAGGACATTACCCCGGTGCTACGATACTGAC
GATGCAGCCAGCTTTGCGAAGCGGGTTGCTCTCGTGGGGTCCAGTGGGGG
TGGGGCTGCGGCTCAAGGGCAGTTCGACGGCCCGTCGCTTCTGCGGCTGG
CCAAGAAGGAACTAGGGAGAGCTGGCATCCACCTTGCCGCGGTGCAGTTC
GTTGCTTGCGCGGAGCCCCTCGATCTCGCTAAACCTAGCTCTGCGGCAAC
GCTATGGGTGGCCGGGACGATCGAAGGCGATGAAGCTCTCGTCGTTGCAG
CAGAAGGCCAGTAA
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