mRNA_Ecto-sp13_S_contig12375.1971.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12375.1971.1
Unique NamemRNA_Ecto-sp13_S_contig12375.1971.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: A0A6H5K2V6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2V6_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 7.800e-98
Identity = 153/158 (96.84%), Postives = 154/158 (97.47%), Query Frame = 1
Query:  199 MGRMGKMSPSRGQAAWTMLPSPSTPSARFARDASAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLGAPDKPEVD 672
            M RMG  SPSRGQAAW MLPSPSTPSARFARDASAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACR+LGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLGAPDKPEVD
Sbjct:    1 MDRMGTTSPSRGQAAWAMLPSPSTPSARFARDASAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRMLGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLGAPDKPEVD 158          
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: A0A836CGB8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.660e-32
Identity = 61/131 (46.56%), Postives = 86/131 (65.65%), Query Frame = 1
Query:  277 ARFARDASAGLK------ARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLGA 651
            A  AR A+A         A+ W+E V   +  EG FAA  KDG  LC+L+N  RP ++ KI  S+ PF QM NIS++LK CR LGV+EH LFET+DL+ E  +  V++CLF+L   +++++P +HGP+LGA
Sbjct:   13 AELARKAAANYDYAGEHAAQEWIEAVTRVKF-EGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCLFALGSTIQSSVPEFHGPHLGA 142          
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: D7FJ16_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.520e-29
Identity = 60/120 (50.00%), Postives = 79/120 (65.83%), Query Frame = 1
Query:  292 DASAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLGA 651
            D SA  +AR W+E V G R+  G F    +DG  +C+LVNT +P ++ KI  S  PF QM NIS+FLK+CR +GV+EH LFET+DL+    +  VVRC+F+L   V+ T P Y GP LGA
Sbjct:   26 DHSAEDQARAWIEAVTGERVV-GPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGA 144          
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: A0A7R9YD67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD67_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.400e-29
Identity = 61/122 (50.00%), Postives = 78/122 (63.93%), Query Frame = 1
Query:  292 DASAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLGAPD 657
            D  A   A+ W+E V G     GDF    KDGQ LC LVN  R  S+ KI  S  PF QM NIS+FL+ACR LGV+EH +FET+DLF    L  VV+C+++L   V+TT+P + GP+LG P+
Sbjct:   11 DPEAMQDAQEWIEAVTGVAFA-GDFGESLKDGQMLCMLVNAIRRGSVRKINESKLPFKQMENISNFLRACRTLGVAEHDVFETVDLFELKDLSVVVKCIWALGRAVQTTVPEFEGPHLGVPE 131          
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: A0A7S2MR69_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2MR69_9DINO)

HSP 1 Score: 114 bits (285), Expect = 1.610e-28
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1
Query:  322 WVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLGAPD 657
            WVEE+ G  +  GDF    + G+ LC LVN  RP  + K+  +  PF +  NIS+FLKACR LGV E+ LF T DL++EN L  VVRCL++L   V+ T+P + GP LG  D
Sbjct:    3 WVEEITGEPVV-GDFVGALRTGEVLCRLVNRLRPGIVQKVNTAGMPFRERENISNFLKACRALGVQEYALFSTDDLYDENNLLSVVRCLYALGGAVQRTVPDFQGPRLGVAD 113          
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: A0A7S4QYJ9_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QYJ9_9DINO)

HSP 1 Score: 119 bits (298), Expect = 1.400e-27
Identity = 54/122 (44.26%), Postives = 80/122 (65.57%), Query Frame = 1
Query:  292 DASAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLGAPD 657
            DA+A  +A  W++E+ G  + E DF    + G+ LC LVN  RP S+ K+  + +PF +  NIS+FLKACR +GV E+ LF T DL++EN L  VVRC+++L   ++ T+P + GP+LG  D
Sbjct:  369 DAAAEEEAAQWIQEITGECVKE-DFFGALRTGEVLCRLVNHIRPGSVAKVNAAGAPFRERENISNFLKACRAMGVQEYALFSTDDLYDENNLLSVVRCVYALGGAIQRTVPEFQGPHLGVAD 489          
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: A0A6A3WDR1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WDR1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 8.600e-27
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  310 KARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLG 648
            +A+ W+E V+G +     F    KDG  LC L+N  +P  IPKI+ S+ PF QM N+SSF++ACR +GV+E  LFET+DLFN+  + QVV+C+ +L   ++ TMP Y GP LG
Sbjct:  297 EAQEWIEAVLGEKFL-ASFGDSLKDGVILCTLMNKIQPGLIPKIQSSSMPFKQMENVSSFVRACRAIGVAEFDLFETVDLFNQKNIGQVVQCIHALGRTIQKTMPEYDGPRLG 408          
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: A0A0W8CZ75_PHYNI (Luc7 protein 3 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CZ75_PHYNI)

HSP 1 Score: 117 bits (292), Expect = 8.650e-27
Identity = 53/117 (45.30%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  298 SAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLG 648
            +A  +A+ W+E V+G +     F    KDG  LC L+N  +P  IP+I+ S+ PF QM N+S+F++ACR +GV+E  LFET+DL+N+  L QVV+C+ +L   ++ TMP Y+GP LG
Sbjct:  290 TAEEEAQEWIEAVLGEKFL-ASFGDSLKDGVMLCSLMNKIKPGLIPRIQTSSMPFKQMENVSAFVRACRSIGVAEFDLFETVDLYNQKNLGQVVQCIHALGRTIQKTMPEYNGPLLG 405          
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: W2NFZ0_PHYPR (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2NFZ0_PHYPR)

HSP 1 Score: 117 bits (292), Expect = 1.150e-26
Identity = 53/117 (45.30%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  298 SAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLG 648
            +A  +A+ W+E V+G +     F    KDG  LC L+N  +P  IP+I+ S+ PF QM N+S+F++ACR +GV+E  LFET+DL+N+  L QVV+C+ +L   ++ TMP Y+GP LG
Sbjct:  290 TAEEEAQEWIEAVLGEKFL-ASFGDSLKDGVMLCSLMNKIKPGLIPRIQTSSMPFKQMENVSAFVRACRSIGVAEFDLFETVDLYNQKNLGQVVQCIHALGRTIQKTMPEYNGPLLG 405          
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Match: A0A6H5L3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.250e-26
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  292 DASAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLG 648
            D      A+ W+E+V G R  EG F    KDG+ LC L+N  +P ++ ++  S  PF QM N+S+FLKACR +GV+EH LFET+DL+    L  VVRCL +L + V+ + P Y+GP LG
Sbjct:  361 DXXXXXXAQEWIEDVTGERFAEG-FGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFETVDLYEGKDLGLVVRCLHALGQTVQNSCPEYNGPRLG 478          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12375.1971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2V6_9PHAE7.800e-9896.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGB8_9STRA2.660e-3246.56Calponin homology domain-containing protein n=1 Ta... [more]
D7FJ16_ECTSI1.520e-2950.00Calponin-homology (CH) domain-containing protein n... [more]
A0A7R9YD67_9STRA2.400e-2950.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2MR69_9DINO1.610e-2848.21Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S4QYJ9_9DINO1.400e-2744.26Hypothetical protein n=2 Tax=Alexandrium monilatum... [more]
A0A6A3WDR1_9STRA8.600e-2747.79Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A0W8CZ75_PHYNI8.650e-2745.30Luc7 protein 3 n=1 Tax=Phytophthora nicotianae Tax... [more]
W2NFZ0_PHYPR1.150e-2645.30Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A6H5L3X7_9PHAE1.250e-2646.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12375contigEcto-sp13_S_contig12375:2135..3343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score310.5
Seed ortholog evalue4.6e-82
Seed eggNOG ortholog2880.D7G043
Preferred nameSCP1
Model size674
KEGG koko:K20526
Hectar predicted targeting categorymitochondrion
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001300,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006810,GO:0006887,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007568,GO:0007569,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0016192,GO:0022402,GO:0030029,GO:0030036,GO:0030479,GO:0030674,GO:0030863,GO:0030864,GO:0032502,GO:0032940,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0046903,GO:0048869,GO:0051015,GO:0051179,GO:0051234,GO:0051301,GO:0051764,GO:0060090,GO:0061640,GO:0061645,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
Exons2
EggNOG free text desc.actin binding
EggNOG OGsCOG5199@1,KOG2046@2759
Cds size474
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462658.3104098-CDS-Ecto-sp13_S_contig12375:2134..22631681462658.3104098-CDS-Ecto-sp13_S_contig12375:2134..2263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12375 2135..2263 -
1681462658.3230011-CDS-Ecto-sp13_S_contig12375:2800..31451681462658.3230011-CDS-Ecto-sp13_S_contig12375:2800..3145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12375 2801..3145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462658.3323638-UTR-Ecto-sp13_S_contig12375:3145..33431681462658.3323638-UTR-Ecto-sp13_S_contig12375:3145..3343Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12375 3146..3343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12375.1971.1prot_Ecto-sp13_S_contig12375.1971.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12375 2135..3145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12375.1971.1

>prot_Ecto-sp13_S_contig12375.1971.1 ID=prot_Ecto-sp13_S_contig12375.1971.1|Name=mRNA_Ecto-sp13_S_contig12375.1971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MGRMGKMSPSRGQAAWTMLPSPSTPSARFARDASAGLKARHWVEEVIGRR
LPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKA
CRILGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLG
APDKPEVD
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mRNA from alignment at Ecto-sp13_S_contig12375:2135..3343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12375.1971.1 ID=mRNA_Ecto-sp13_S_contig12375.1971.1|Name=mRNA_Ecto-sp13_S_contig12375.1971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12375:2135..3343- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTTCCTCTTCTACACCTTGCACCACATCGCATCGGCCGATTTTCCGC CTGCCCCTAAGCTGTGGGTAGGAGATGGACAAGTGGTAGCTCACGGGGTC AATCAAAAGGCTGATTTAGAGGACCGTCGAAGATTTCCGTTGCACGGCAA CTACGTACACTGCTTCTGTAGGCTGCATTACGTTACACCACGCTGGAAAT GGGCCGGATGGGAAAAATGTCGCCTTCGAGAGGGCAGGCAGCGTGGACGA TGCTCCCAAGTCCGTCCACGCCATCTGCGCGGTTCGCCCGAGACGCCAGC GCGGGTCTCAAGGCGCGGCATTGGGTCGAGGAAGTGATAGGGCGACGACT CCCGGAGGGCGACTTCGCCGCTGGCTTTAAAGATGGCCAGGGTCTGTGCG AGTTGGTCAATACCTTTCGACCGGCTAGCATTCCGAAGATAGAGAGGTCA GCGTCTCCATTTCACCAGATGGCGAACATCAGCTCTTTCCTCAAGGCATG CCGGATACTTGGTGTCAGCGAGCACGTGCTCTTCGAAACTCTGGTGAGCA GGATTCTGCCCTCAACTCTTCCCAAAATATTTGATGACGCCTGTCGGCCG GTCTTTTCAAGCACTTGCGACAGAATACAAGATTTACCTCCGTAGTACAC TATACAGCAGTAGTTAGCGCGGAGAGCTGCAGAGATCAACAGGCAACGAG CTGGATGCACACATTGAGCGGCTGCAATTGTTGTCGAGGTACTGGCCGGT GACCACGTTGAGAGCGAAACCTTTGCAACACGGCGGCGGTGGCTCTTTTG GCGGCTGACGATATTTTTTGCGTGGTTGATTGGCATCACTCTCGCGACTT TTTGACCCTTTGGAATGCACCATGGATTTTGTTTGCACGTGCCCCTTGCT CCATCCGTAGTGCGTTGATAATCAAGAGCGCTGAACCGACATTTCGGCTG CTCCCAAAGATGCCACAAGCAGCTGCTGCTGTTGCTGCCACGCAGAGCAA TCTCGCAGTGGATGCCGTGTCGGTCACAACTTGATTTCCCTCGCCCTCTT GGTCCTGCTGCCGCCGTTGTAAACATATAGGACCTATTCAACGAGAACCG GTTGCCGCAGGTCGTTCGGTGCTTGTTTTCCCTGTCAGAGCTCGTTCGCA CCACCATGCCGTCGTACCATGGGCCGTACCTCGGCGCCCCGGACAAGCCG GAGGTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12375:2135..3343-

>mRNA_Ecto-sp13_S_contig12375.1971.1 ID=mRNA_Ecto-sp13_S_contig12375.1971.1|Name=mRNA_Ecto-sp13_S_contig12375.1971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12375:2135..3343- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCGGATGGGAAAAATGTCGCCTTCGAGAGGGCAGGCAGCGTGGAC
GATGCTCCCAAGTCCGTCCACGCCATCTGCGCGGTTCGCCCGAGACGCCA
GCGCGGGTCTCAAGGCGCGGCATTGGGTCGAGGAAGTGATAGGGCGACGA
CTCCCGGAGGGCGACTTCGCCGCTGGCTTTAAAGATGGCCAGGGTCTGTG
CGAGTTGGTCAATACCTTTCGACCGGCTAGCATTCCGAAGATAGAGAGGT
CAGCGTCTCCATTTCACCAGATGGCGAACATCAGCTCTTTCCTCAAGGCA
TGCCGGATACTTGGTGTCAGCGAGCACGTGCTCTTCGAAACTCTGGACCT
ATTCAACGAGAACCGGTTGCCGCAGGTCGTTCGGTGCTTGTTTTCCCTGT
CAGAGCTCGTTCGCACCACCATGCCGTCGTACCATGGGCCGTACCTCGGC
GCCCCGGACAAGCCGGAGGTGGAC
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