mRNA_Ecto-sp13_S_contig835.19710.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig835.19710.1
Unique NamemRNA_Ecto-sp13_S_contig835.19710.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig835.19710.1 vs. uniprot
Match: D7FGS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS0_ECTSI)

HSP 1 Score: 600 bits (1548), Expect = 7.580e-210
Identity = 330/374 (88.24%), Postives = 338/374 (90.37%), Query Frame = 1 
Query:  274 MPHSLSSYGLSDGRVSTTMATXXXXXXXXGLGQARSFTIPLVMPGNSGMPRAKPASRAVVGRQPSTDEASWDAEEIATADVATAISRDLVTKAERWKLLAEEPLMAQSITPLLADNVDKHEVAAIYVRDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNVCTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLGWRPTWLGSLWIECAFCVFYTCHLRQEALSRLGSVPVRNDDGGGGVGXGWSGVEGEEDEE----EVERDRPQAEVYSLSALRPWQLARTCMVTVLSVSIVAKLFSHYIFGVTWFRQVFWRHVILPFLFISRRTYLKHFLAATIRLLPRMVPVVFLIXXXXXXYGFIGYIVYRDEP 1383
            MPHS SSYGLSDGRVSTTM  XXXXXXXX LG+ARSFTIPLVMPGNSGMPRAK AS  VVGR+PSTDEASWDAEEIATADVATAISRDLVTKAERWKLLAEEPLMAQSITPLLADNVDKHEVAA YVRDALAGRDSSACIHNERSIRALKWFRNDAWNSLLN+CTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLGWRPT LGSLWIEC  CVFYTCHLRQEALSRLGS+PV+N  GGG   X                E+ERDRPQAEVYSLSALRPWQLARTCMVTVLSVS+VAKLFSHY+FGVTWF    WRHVILPFLFISRRTYLKHFLAATIRLLPRMVPVVFLIXXXXXXYGFIGYIVYRDEP
Sbjct:    1 MPHSSSSYGLSDGRVSTTMTXXXXXXXXXXLGKARSFTIPLVMPGNSGMPRAKSASGGVVGRRPSTDEASWDAEEIATADVATAISRDLVTKAERWKLLAEEPLMAQSITPLLADNVDKHEVAATYVRDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNICTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLGWRPTSLGSLWIECVLCVFYTCHLRQEALSRLGSIPVKN--GGGXXXXXXXXXXXXXXXXXXXXELERDRPQAEVYSLSALRPWQLARTCMVTVLSVSLVAKLFSHYVFGVTWFS---WRHVILPFLFISRRTYLKHFLAATIRLLPRMVPVVFLIXXXXXXYGFIGYIVYRDEP 369
[Close]
BLAST of mRNA_Ecto-sp13_S_contig835.19710.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 1.640e-107
Identity = 203/385 (52.73%), Postives = 252/385 (65.45%), Query Frame = 1 
Query:  400 MPGNSGMPRAKPASRAVVGRQPSTD-EASWDAEEIATADVATAISRDLVTKAERWKLLAEEPLMAQ-------------SITPLLADNVDKHEVAAIYVRDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNVCTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLGWRPTWLGSLWIECAFCVFYTCHLRQEALSRLGSVPVRNDDGGGGVGXGWSGVEGEEDEEEVERDRPQAEVY--SLSALRPWQLARTCMVTVLSVSIVAKLFSHYIFGVTWFRQVFWRHVILPFLFISRRTYLKHFLAATIRLLPRMVPVVFLIXXXXXXYGFIGYIVYRDEPHVSSLLSDLDLFDQPASSALTFLRIFTARSFMLDVEEIYGG 1506
            +PG  G    K  +R V  ++     +A W A E     VATAISRDLV KAERWKLL  EPL                 + PLLA +VDKHEVA+IYV+DALAGR+S  C+HN+ S+RALK  RN AWN LLN+CT+VHL+LP+VEIQRCL CMG  +   SL+ N+L  GWRPT LGS+W+EC  C+ Y   L + AL+    V  R+  GGG      S  +G+ D    + +  +A  +  SL+ L PWQLARTCMV +L+  ++  +F+HY F +TW R   W  V LPFLFISRRTYLKHF+   IR+LPRM+PVVFL+      Y FIGYI+YRDEP  SSLL DLDLF QP+SSA+TFLR+FT+  FMLDVE IY G
Sbjct:   50 LPGRRGGHLRKKPTRGVTRQEGHLSLDAIWSASE-----VATAISRDLVEKAERWKLLGGEPLTGSPARFAHEDRSQLPEVQPLLAHDVDKHEVASIYVKDALAGRESPTCMHNQNSLRALKLVRNKAWNQLLNICTIVHLMLPIVEIQRCLPCMGMQKIPESLDSNSLHTGWRPTLLGSMWLECLLCLLYVYDLYKVALAS-NHVHKRSHRGGG------SDRDGDRDIGVSKGEGAKASSWHSSLARLPPWQLARTCMVALLAFGLLTNIFAHYAFKITWHR---WSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVVFLMSFVVFFYAFIGYILYRDEPRTSSLLQDLDLFSQPSSSAMTFLRMFTSIPFMLDVEHIYAG 419
[Close]
BLAST of mRNA_Ecto-sp13_S_contig835.19710.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 8.940e-71
Identity = 141/311 (45.34%), Postives = 172/311 (55.31%), Query Frame = 1 
Query:  574 EEPLMAQSITPLLADNVDKHEVAAIYVRDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNVCTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLGWRPTWLGSLWIECAFCVFYTCHLRQEALSRLGSVPVRNDDGGGGVGXGWSGVEGEEDEEEVERDRPQAEVYSLSALRPWQLARTCMVTVLSVSIVAKLFSHYIFGVTWFRQVFWRHVILPFLFISRRTYLKHFLAATIRLLPRMVPVVFLIXXXXXXYGFIGYIVYRDEPHVSSLLSDLDLFDQPASSALTFLRIFTARSFMLDVEEIYGG 1506
            E+      + PL+A +VDKHEVA+IYV+DALAGR+S  CIH++ S+RALK  RN AWN LLN+CT+ HL+LP+VEIQRCL CMG  +   SL+ N+L  GWRPT LGS+W+EC  C+ Y   L + AL+R                                                                                   W  V LPFLFISRRTYLKHF+   IR+LPRM+PV FL+      Y FIGY++YRDEP  SSLL DLDLF QP+SSA+TFLRIFT+  FMLDVE IY G
Sbjct:   55 EDRSQLPEVQPLVAYDVDKHEVASIYVKDALAGRESPTCIHDQNSLRALKLVRNKAWNQLLNICTIAHLMLPIVEIQRCLPCMGMQKIPESLDSNSLHTGWRPTLLGSMWLECLLCLLYVYDLYKVALAR-----------------------------------------------------------------------------------WSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVAFLMSFVVFFYAFIGYVLYRDEPRSSSLLQDLDLFSQPSSSAMTFLRIFTSIPFMLDVEHIYAG 282
[Close]
BLAST of mRNA_Ecto-sp13_S_contig835.19710.1 vs. uniprot
Match: A0A6H5JGA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA6_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 3.140e-54
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:  586 MAQSITPLLADNVDKHEVAAIYVRDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNVCTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLGWRP 882
            MA+SITPLLADNVDKHEVAAIYVRDALAGRDSSACIHNERSIRALK FRNDAWNSLLNVCTLVHL LPMVEIQRCLSC+GPH+RSASLEDNTLFLG RP
Sbjct:    1 MARSITPLLADNVDKHEVAAIYVRDALAGRDSSACIHNERSIRALKCFRNDAWNSLLNVCTLVHLTLPMVEIQRCLSCVGPHKRSASLEDNTLFLGIRP 99
[Close]
BLAST of mRNA_Ecto-sp13_S_contig835.19710.1 vs. uniprot
Match: A0A836CJB1_9STRA (Ion_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.070e-11
Identity = 106/443 (23.93%), Postives = 161/443 (36.34%), Query Frame = 1 
Query:  502 ATADVATAISRDLVTKAERWKLLAEEPLMAQSITPLLADN-------------VDKHEVAAIYV------------------------------------------RDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNVCTLVHLILPMVEIQRCLSCMGPHRRS-------ASLEDNTL--FLGWRPTWLGSLWIECAFCVFYT------------C------HLRQEALSRLGSVPVRNDDGGGGVGXGWSGVEGEEDEEEVE---------------RDRPQAEVYSLSALRPWQLARTCMVTVLSVSIVAKLFSHYIFGVTWFRQVFWRHVILPFLFISRRTYLKHFLAATIRLLPRMVPVVFLIXXXXXXYGFIGYIVYRDEPHVSSLLSDLDLFDQPASSALTFLRIFTARSFMLDVEEIYGGRP-VRAHVRKY 1536
            A AD    IS +L  +  RW+ LAE+       T    D+             VD++E A+ Y+                                          RDA+ GR   A IH +R + A++  R      + NV     L+LP++E+     C     RS         L+ ++L  F+GWRPT LGS W+E   C F+             C      H    A  RL  V ++  D    +   W     E     +E                D P       S  +    A  C +    V+ V K    Y   +T+F            ++I+   YL+ F+     +LPR++PV          YG++GY+ +         L +LDLF     + LT LR+FT+  F+LD+E +Y   P +R +   Y
Sbjct:   44 AAADAIVDISAELAERRTRWRYLAEKADWLLGSTSHARDDAAAARKCQPQDPAVDRYEAASYYIKWVRGGRVRAGSHNSSGGWADFAHCMLVPAPWEGALPPGPLSRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDI---LIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKR-GQYSRALTFF------------IYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATY 470
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig835.19710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FGS0_ECTSI7.580e-21088.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0T6_9PHAE1.640e-10752.73Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR41_ECTSI8.940e-7145.34Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A6H5JGA6_9PHAE3.140e-5493.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJB1_9STRA1.070e-1123.93Ion_trans domain-containing protein n=1 Tax=Tribon... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig835contigEcto-sp13_S_contig835:12771..20913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2012
Hectar predicted targeting categoryother localisation
Exons10
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001090.3
Cds size1293
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig835.19710.1prot_Ecto-sp13_S_contig835.19710.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig835 13044..20467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464104.9520295-UTR-Ecto-sp13_S_contig835:12770..130431681464104.9520295-UTR-Ecto-sp13_S_contig835:12770..13043Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig835 12771..13043 +
1681464105.123172-UTR-Ecto-sp13_S_contig835:20467..209131681464105.123172-UTR-Ecto-sp13_S_contig835:20467..20913Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig835 20468..20913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464104.9634118-CDS-Ecto-sp13_S_contig835:13043..132451681464104.9634118-CDS-Ecto-sp13_S_contig835:13043..13245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 13044..13245 +
1681464104.972338-CDS-Ecto-sp13_S_contig835:14418..145181681464104.972338-CDS-Ecto-sp13_S_contig835:14418..14518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 14419..14518 +
1681464104.982006-CDS-Ecto-sp13_S_contig835:15064..151251681464104.982006-CDS-Ecto-sp13_S_contig835:15064..15125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 15065..15125 +
1681464104.995389-CDS-Ecto-sp13_S_contig835:15863..159501681464104.995389-CDS-Ecto-sp13_S_contig835:15863..15950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 15864..15950 +
1681464105.0121405-CDS-Ecto-sp13_S_contig835:16368..165161681464105.0121405-CDS-Ecto-sp13_S_contig835:16368..16516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 16369..16516 +
1681464105.0232193-CDS-Ecto-sp13_S_contig835:17216..173071681464105.0232193-CDS-Ecto-sp13_S_contig835:17216..17307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 17217..17307 +
1681464105.0347414-CDS-Ecto-sp13_S_contig835:17561..178101681464105.0347414-CDS-Ecto-sp13_S_contig835:17561..17810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 17562..17810 +
1681464105.0456479-CDS-Ecto-sp13_S_contig835:18545..186351681464105.0456479-CDS-Ecto-sp13_S_contig835:18545..18635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 18546..18635 +
1681464105.0936809-CDS-Ecto-sp13_S_contig835:19388..194691681464105.0936809-CDS-Ecto-sp13_S_contig835:19388..19469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 19389..19469 +
1681464105.1127138-CDS-Ecto-sp13_S_contig835:20283..204671681464105.1127138-CDS-Ecto-sp13_S_contig835:20283..20467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig835 20284..20467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig835.19710.1

>prot_Ecto-sp13_S_contig835.19710.1 ID=prot_Ecto-sp13_S_contig835.19710.1|Name=mRNA_Ecto-sp13_S_contig835.19710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=431bp
MPHSLSSYGLSDGRVSTTMATTTGGGGGGGLGQARSFTIPLVMPGNSGMP
RAKPASRAVVGRQPSTDEASWDAEEIATADVATAISRDLVTKAERWKLLA
EEPLMAQSITPLLADNVDKHEVAAIYVRDALAGRDSSACIHNERSIRALK
WFRNDAWNSLLNVCTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLG
WRPTWLGSLWIECAFCVFYTCHLRQEALSRLGSVPVRNDDGGGGVGGGWS
GVEGEEDEEEVERDRPQAEVYSLSALRPWQLARTCMVTVLSVSIVAKLFS
HYIFGVTWFRQVFWRHVILPFLFISRRTYLKHFLAATIRLLPRMVPVVFL
IFFITFFYGFIGYIVYRDEPHVSSLLSDLDLFDQPASSALTFLRIFTARS
FMLDVEEIYGGRPVRAHVRKYIRRRLTYVW*
back to top

mRNA from alignment at Ecto-sp13_S_contig835:12771..20913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig835.19710.1 ID=mRNA_Ecto-sp13_S_contig835.19710.1|Name=mRNA_Ecto-sp13_S_contig835.19710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig835:12771..20913+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTTACTGCAGAGCGGCAGACCTGCCCCCACTGGTGGCGGCGGAGACGA
CGGCGATGACGACAATCGCTGGATAAGGCGCGGCGCGTCGTTATCAAGGC
TCTCATTCCTGACTTCCTCTCCCTGGGGGGGTCGAGGCGAAAGCGGTCAT
AACGGTGGGGCGCTGGGCTACAACACCGGCGGCGAAGCCGATTTCGGCAA
CGGCGATTCCCGCGCTGGCGCTGGCGTTCTTGATGGCGGGAGTGGAAGAG
GGGCAGGGCCAACCAGGCAGGGCATGCCGCACTCCTTGTCGTCGTACGGA
CTCTCGGACGGGCGGGTTTCGACGACGATGGCCACCACCACCGGCGGCGG
AGGGGGGGGAGGCCTTGGCCAGGCGCGGTCGTTCACGATACCGCTGGTGA
TGCCCGGGAATTCGGGGATGCCTCGCGCCAAGCCGGCGTCGAGAGCCGTC
GTCGGGCGGCAGCCGTCCACTGATGGTGGGTTGGGAGTGTGAGGTCTCCC
TTCGCGCCGAACCGGCGTTAGTTGTGACGCCAAATTGGCCTGCCTGGTAG
TCCTCCGGCAGTAGAGCGCAGGCCGCCGAAACAGTCTTTCCTGTTTCTGT
ATGTTGCAAGACATACATATGGCCCAGGCGTACTTTCCTCCGAAATACAG
GAGTCACTTGGCATGCTTTGGTGCGGTCCTCGGCATTCGCCGACCATGGC
CTAGGCGCCTTCACAGCAGTAGTTTTATTTGCCCAGCCGGTGCGCTTTAA
AGCCACAACACTTCGATTTATCCACCCTTGGCCTCTTCACCCGCCGACAG
GAGGGTGGGTTTGAGGGAAGAATCTTGTTTCCGTTCGCTTCAAAAGGGCG
TTCGTTCCCCCACCAAAGTGGTCTGCTCGCTTGGTAGTCCGCCGGCGGTA
GAGCAAAGGCTGCCGTAAACGGCAGGCTGCCGTAAACGGCAAGTTGTTTC
TATTATTGCAAGATTGATAAATTGCCCCAAGCTTGGCTTTCTTTCGAATC
TATGAGGAGGCATGCTTCGAGCGAGAGTCAAATGGGTTGAGTATTGGCTG
TTGTTCTACTCCTCTGTTGTTGGGCATTGACTTTCCTCCGAAGCAATCAA
GAGGCATACTTCGAGAGAGAGTCAATCCGGCTTAGTATTGGCTATTGTTT
CACTCTAGGTATTGTATGGGTTTTCCAGGAATAATTTGTGCACGAGCGGA
GCTTGAGCTCACGAAAACTTCCGGCATCTTGCCTGTGCCGAAACATCACC
TCTTCCTCACCGCCTTGTCTCTGTCATTCGTTGTTGGCCGTGAAGTTTGA
CTGTTGGACTGCTTTGTCGGGAGTCTGCTGCTATCGTTGCTACTTTTTAT
CCCATTTTTTCGACAAGAACACAACTCTTCGCCCCCTCTCCTGCAGGTTG
TTACGGTGTTACAACAGACAGGTTTTTGCTCGTTCTTTCTTGTTTTCTGA
CGCGACACGAGACAAAAAATCATGTTTCTTGTTCTTCTGCTCTTTTATCT
TTGGCGCTTCTTACGGCCCAAGCTTAGCAGAGGCAGCTAGCTCCCTGTAG
AATGCTCAAGAAATCGCCACAACAACACTAGCACTTGTTTGCCCCGTTTC
CTGTCTCTGCTTTTCTCCTACGCTGCGTGCTGATACGCCCGTAAACAGAG
GCATCGTGGGATGCCGAAGAAATCGCCACCGCTGATGTGGCTACCGCCAT
CAGCAGAGACCTCGTGACCAAAGCCGAGCGATGGAAGCTCCTGGCCGAGT
AAGTTGACCGCTCCATCCACAGAAAGGCCCCGCAACCTGTTTCTATTTAT
AGTAAATACGACAAAGTTCGGGTCGGGGGCTCAATGTTTCAGGCATATCG
TGGGTATCGTCGAGCACAGGTTGTTCGAAAGAGTTCAGGTGAAGCACCGA
CCTCTTAGATGTGATTTTTGATAACCTGTAGCTTCTTGTTTGGTCGCAAA
AAATTGAGGCTTCGAATTTCTTGACAGAACGATTGTTAGTTGCGCGCCCG
TGATGTAGCCTGCTCCAAGCCGAGGTCGGTTGAACAGCAGGAACATGGAC
TGCTCGAGGACATACGTGTTGATGCATCTCGGAATGGGAAGATGTCTGGC
ACCGCATGGTGAAAGATCACTGACGTAATTCAATTAGACCGACTTTGTCG
GAGAAGACGTAACGGACCTGCCACCAAAGGGGGGCATCAATACGTGCCGA
GGATATAACCCGTCCAGAGGTGGACGGCGAAACTCGACAAGTGAAGATGT
GGCGCCCCTTAATCGCAATCGCTCTCATTCTGAACGGTCCGCAGGGAACC
GTTGATGGCTCAATCGATCACACCCCTTCTAGCCGACAATGTCGACAAGC
ACGAGGTGAGAAGAACCTTGAGCAAGAAAAACGGCCTGGAGGTTGCTCCG
GGATGTTTTGAGCAGGAAAAAAAAAAAAACGAAAAGCAGGATATGGATAT
ACGTTTACATCTTGGTGCGACGTTTAGTGTTCAGGCATTCCGTTGGGGCC
GTTGTTGGACGCCTGCCCACATGGAACTCCGTTCAATGATTTTGGTTTTC
TTGTCTTGTCCTTGCATTGAAACCCGTTCGGGGTATCTTTTTCCCGGGAA
CTCAAGGCTCCGAGTTGATCAAGCTGGGACAAAACGGATCCAGATTCTGG
TGGAAGCAGGACGTATTGCACAGACCTCCACGCAACCAATCGATCGGCCA
CCATTCATTGTCCACAGCAAGCACGACAGCTGTAGTCACGCGAAGCGGTC
AGCGGGGAGAGCTGGTTTGACCTACTGTAGCCTCGTAGAGAAATCTGGAA
AGAGAAGTAGACTACGCGCTACAGTACACCTTCGGGCCCCCCGCATGAAG
GAAGGAAGTGTTTTTTTCTGGCCTTTGGAATCAGCTTGTTGCCGAGGGTG
CTACTGAGAGGCCCCCACCGCTGCACGACGAGTTGTCTTTTGTTTTTTTC
TGATAACATCATAATTTCAGCTCTTCCACACACGAGAGTCTGGGACAAAC
TAGCGACGAATTCATACATAAGGTCAGCGGAGAAACCTGTGTTTTTGTAC
CCCTTGCGGTGCTCTTTGCGCCTCCTTCCGCCCTGCACATGAGGTGGCCG
CGATTTACGTCAGGGACGCTCTGGCAGGGAGAGACAGCTCGGCGTGCATC
CACAACGAAAGGTCCATACGCGCGTTGAAGGTGAAAACAATATTTGCGTG
CTTGGTAGCACGGGGAGGCTTCCTCGCTTTTCACCGCGTGACTACGACGT
TTTTATGCGATGGTTAATCACGCCCTTCTGTGGGGAGAGGCGCACCCACG
CCTCCATTTACGGAGTGCAGCAGTGGGCCCCCCTCAGTGATGCTGGTTGA
GCATGTCATGGTGCCCCCAATGGCGCCGGTGAAGTTGCGTACCACAGCAG
TCCGAACCATGCCGACTGCCCGCTACTGTGTCGGTAAAATTGGGCAGGAT
ATTGCAGCTGGGCAGGATATTGCAGCGTTACTGAGGCCCCCCCACTGCTG
CACCTCAACGCGGTTCTGTGACAACACGTCCGAGGTGGAGTTATTGACTC
ACTTTTCCCGTTCTTGCGCCTGTCTTGGTTGAACGAAAACAAAATAAGTG
GTTCCGGAACGATGCCTGGAACAGCCTGTTGAATGTCTGCACGTTGGTCC
ACCTCATCCTGCCCATGGTGGAGATACAGAGGTGCCTGTCCTGCATGGGC
CCGCATAGGCGGTCGGCTTCCTTAGAGGACAACACTCTCTTCCTAGGTCA
GTAGTGTTTATTTATATATTTATTTTTTGTCTTGCCCCTTTCCTTCGCGG
GTTGGGTCAGTGACCTCTCTTCTGCCTTTGCCCCTCGTTTCTACAATATT
GCGTTTGTCTTTGCTTCGTAGGACGTTGACGTCTCCCTTGCCTCATTTTT
TGGTTGTTGTTTTTTTCCCTTCCCTCTGCCCTCCCAGGAATTCGCCCCCA
GAAGTACAACAGGGGCGCCTTTGCCTGCAGTCTCCTACCTGTATCGTCCT
CCCTGCCTTCCCTTGCTTTCCCGTGCTGCCCGTTTTTCGAGTGGGAGAAT
ATTTGATTGTGGTCATCGGTCTTGACACGTTGATAGTCCGTGTCATCTTT
GCGTACCATCTCGCAAGTCTCTTGAAGGCAAACAATCCAACGTCCGCTTG
TGACAATTAGACCTGCTCCTTGAAACAAGCTGGAAAAAAAAAATTGAGAG
ACGGCTACCTCGCTCGCGAAAGTGTACAGGTTCCGCCCTTCCATAACGAG
TCTAGAAGGGCGAAATGTACCACCGTGTTGTTTCTGTTTGTGTTCATGCT
GTGGCATGCATTCGTTCTGGCGCAAGTGCGGCGGCCTGCTTGCCTGTACC
TCGCCCACGTCTCCGCGGATAGCATCGTGCCCCCCCCTCCCCCTCACACA
TTACGCTCTTGAAACCACCCCGCTGGCCGTTCTTTTGTACTGTCAGGGTG
GCGGCCTACCTGGCTGGGATCGCTTTGGATAGAGTGTGCTTTTTGTGTCT
TCTACACCTGCCATCTCCGCCAGGAGGCCTTGTCCAGGTCAGTCCGATAT
GTCTTCGTCGTGGTGGTGGTGGTTGTTGTTGTTGTTGTAACTGTCTCGGC
GCGATGTGTGTGTAGTCGTCCCGTCTATTCTGGCGCCATGGGGCTACACA
CATTGCGGTCACCCCCTTCGGAGGGAACAATTGGCCATCGATGATTGGTC
CTATGGGAACAATGCCCGGTCCTCTCGCGGAGGACGAATGGTCAATGGTC
TATCCGCTGACGCCCCCCCTCCCCCTTCTTCGCCTGTCTAGACTTGGAAG
CGTCCCTGTGAGGAACGACGACGGTGGCGGCGGAGTCGGTGGGGGGTGGA
GCGGGGTCGAGGGAGAGGAGGACGAAGAAGAAGTAGAGCGCGATCGCCCG
CAGGCGGAAGTTTATTCGCTGAGCGCGCTTCGCCCGTGGCAGCTGGCGCG
GACGTGCATGGTGACCGTGCTCAGCGTCAGCATTGTGGCGAAGCTGTTCT
CGCACTACATCTTCGGGGTAACTTGGTTCAGGCAAGTTTTGTTTTCCGAC
CCTTGCTGTGCTCGCGGCAGGCAGGCCGCCTGTTCCACGTCAGGCGGAGA
TTGCTGTGGACGCACAAAGGGAGCAACTGTTTTTTCTGGAGTTCGGTCTA
GCGCCCAGGTCGTGGGGCGTCTTGGCGCGCACAGAGGGCATTTCTTTTGT
TCGGGTGTGGTGTGCTTTGGAATGCACCAAGTGCACCACTGCTTGGGTTT
GAAACTCGTGTGGGCGTATTTTGGCTTACGTGCACGTCACGTGGGTATTT
TGGCGCACACAGAGGGCATTTGTACCTTATGGGTGTGGTGTGCTTTGCTA
AGGGCACCAGCGCTCGCGTCTAGACATATTTTGGCTTAGCGTCCACGTCG
TGCGGGCGTGTTGGCGCACACAGAGATCGTTTTTTTTATTTTTGGCGTTG
GGTGCTTTGCCATAAAGTCATCGTGGTCCCGGTTTAGCGGTCCATATCAA
AAAATGTTGTAACCGCTATTGAGGGCATCGCCGCTAAACCGGATTGGCAG
TTACATTTCAGCTTTCCGAGGTGCATCGGTGCCATGAGATTTTGGGACCG
CTATTCAGGGCATCCCGCTAAACGGGGAACCGCTAAACCGGCACCACCGC
TGTATACCAAGTGCACCGGTGCTGGCGTTCGAAACTCCCGTGTGCACAAC
GCTCGCGAAAAACTGAAACTGCTCCTGTGACGGACGCCCGAATCACCGGC
AACACGGTTTTTTACGGTTCCGCAGTTGGAGGCACGTGATTCTACCGTTC
TTGTTTATCAGCCGAAGGACGTACCTCAAGCACTTCTTGGCGGCCACCAT
CCGACTGCTTCCGAGGTGAGAAAAGTTCTGAGAAACTTATCCGGTAGGGG
GCAGCGGCTACTCTATTTTCGAGTGTCCCTCTTTCCAGCACAACGCTTTC
CTTGCCCGTGCCAAGCTCTTTTCCAAGATCGTTGACAATTATTTCGAAGT
AAAACTGAACCATTGTCTGTAGGTGCTTTCAGTTGCTAACGGAAAGGGTC
ATCATACCGCGAATTCCCCAGGAAAGTAGAAGCAATATAGGGGGCATGCT
ATGTAGTTTGAGGTTGATTTCCTATCGCCCACGTCCAGAGCAATTGGCGC
TGGTTTCGTTTCGCACGGCCTTGTCGCGTGTTTTTTCCTTGTTGCTCTTA
TATTTGTCGCTGGTGGTGGTGGCAATCGTACTACTGGCAAGACAAGGACG
AGGGACTTAATTCTTCTCATTGTTGCAGAACGGACGGCTGTTTCACGCTA
ACGAAATGGACGCTGCTGAATTCGATCCTAGTGTCGCTATCGTTGCCGCT
GTGGCTGTGGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGTTGCTGC
TAATGGTGCTTGTGCTTCTCCGTTTGCTGACGCTGCTGCCCATGCTGCTG
CTTACGCCGCTACCCCTACTGCTGCTTCTGGTGCTTGCGATTTACCGGCG
TTCCATCGGTGCCATGTGCTGGGGGTGGGGCGCTCACGTTGTGGCCATGT
CGGCGTGATAAATGATGCCGGCGGCGGCGGTGCTTCTCTGATGTGTTGAC
GCTCCTGACACTGACCAGGATGGTTCCTGTGGTGTTCTTGATCTTTTTCA
TCACGTTCTTCTATGGCTTCATCGGGTACATCGTCTACCGGGACGAACCG
TGAGAGAAAAACGCCTACCGGTACTGTTCACCATATTTCGAAGGGAGATA
ACACCCCCCGCTCAAGTCATTCGCATCCGTCCACAACGAAGTTAAGCATA
AGATGCCAAGCACCAGGCAGCGCACCCTCCATGGCCATGCGCCTCGCCGA
GTAGAGTACCTCACAGCGTTTCGCGCTTGGTGATATGAGGCCCTGGTCCA
GCGAGAACCCGGCGTTCCGTCCCGGTTTTGTAGGAGTACGAGGTCAATCG
TCTGATGACTACGGCATGCACGGCTGAGCACACCCCCCCCCCCACCGGCG
ATCCCATTGTAGCTTCTGAATGAATTGTCTCAGGATGTATTGTGCATAAG
GGCGTGTGGTATCGATTATCCCTCTGTTTCTTATCTGAATTATTTCGTGG
GTGGCTCGTGTGAACCGGTAGTTTTTCCACCGAGTGTGTTACTGTGTGTG
TGGGTGTTATCTTGCGTGTAATCGTGTGTCCCATACGGTAGTCAAGGTGT
CCTTGATTTTCTTTGTGCATGATGACCCTTATCCTGAAAGTTCCCTCATG
CTGTTTCCACGTGTTTCTGGGTAAGCTTGTCATCGCGGATTTTTCTTTTT
TCCTCTCACGAGTGGCGGAAAATTCTTCTCTGCGTTAAGGTGACAACGAA
TCACGATGTTGAGACTACAGTGAAACGTAGACGACGAATGGGTGGTAGTC
TTTGGTTCCTCTCCGCCCTTTCCACGGTTCTTGCGATTTCACGAGTACGG
CAAAACATTTCGTATCCCGGATGTGCCCTCGATGACGACTGCGTATTTGT
GCTGTTACCGAAGGCATGTCTCTAGCCTGCTATCGGACCTGGACCTGTTC
GATCAGCCGGCATCGTCGGCGCTGACATTTCTGCGAATTTTCACCGCGAG
GTCCTTCATGCTGGACGTCGAGGAGATCTACGGTGGCAGACCTGTGAGAG
CCCATGTTAGGAAATATATCCGTAGGAGGCTGACATACGTATGGTAACTC
CCCTGGACCGACCGACTTTCAACGTTCGATTACTCCACCGCCAAGGGGGT
GCGGAAAGAGCCCGAGCATTCCACCGGAAGACCACGACGAGATGTTTCCA
AACAAAGCTTTCGGTGTTGGCATCATCTTGGTTGTGGAGATGTGGAGCTT
TGAAAATCGGTCTAGGGGGGGTGCAATCTCTCCGCCTCTTACGGAATACC
ACGGTACGGTATACGGTACGGTACAGACAATCTTGCCTGTGGAGCGGTCG
AGCCTTGAACATCAGGCTCGCACTTCCCTCTTCTTACCGTGACAGCAGGC
ACGTTCGACGGCTTGTCGTACGGGAAGAGAGCTCTTGTTCGCGCTGTGCT
TCGCTTACAATCACTTTCCATGGTATAAATAGCTGCCTCGGTGTTATGTG
TTCCGTGTGTATATGTGTCGGTACTTGGCTGCACAGAAATGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig835:12771..20913+

>mRNA_Ecto-sp13_S_contig835.19710.1 ID=mRNA_Ecto-sp13_S_contig835.19710.1|Name=mRNA_Ecto-sp13_S_contig835.19710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig835:12771..20913+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCACTCCTTGTCGTCGTACGGACTCTCGGACGGGCGGGTTTCGAC
GACGATGGCCACCACCACCGGCGGCGGAGGGGGGGGAGGCCTTGGCCAGG
CGCGGTCGTTCACGATACCGCTGGTGATGCCCGGGAATTCGGGGATGCCT
CGCGCCAAGCCGGCGTCGAGAGCCGTCGTCGGGCGGCAGCCGTCCACTGA
TGAGGCATCGTGGGATGCCGAAGAAATCGCCACCGCTGATGTGGCTACCG
CCATCAGCAGAGACCTCGTGACCAAAGCCGAGCGATGGAAGCTCCTGGCC
GAGGAACCGTTGATGGCTCAATCGATCACACCCCTTCTAGCCGACAATGT
CGACAAGCACGAGGTGGCCGCGATTTACGTCAGGGACGCTCTGGCAGGGA
GAGACAGCTCGGCGTGCATCCACAACGAAAGGTCCATACGCGCGTTGAAG
TGGTTCCGGAACGATGCCTGGAACAGCCTGTTGAATGTCTGCACGTTGGT
CCACCTCATCCTGCCCATGGTGGAGATACAGAGGTGCCTGTCCTGCATGG
GCCCGCATAGGCGGTCGGCTTCCTTAGAGGACAACACTCTCTTCCTAGGG
TGGCGGCCTACCTGGCTGGGATCGCTTTGGATAGAGTGTGCTTTTTGTGT
CTTCTACACCTGCCATCTCCGCCAGGAGGCCTTGTCCAGACTTGGAAGCG
TCCCTGTGAGGAACGACGACGGTGGCGGCGGAGTCGGTGGGGGGTGGAGC
GGGGTCGAGGGAGAGGAGGACGAAGAAGAAGTAGAGCGCGATCGCCCGCA
GGCGGAAGTTTATTCGCTGAGCGCGCTTCGCCCGTGGCAGCTGGCGCGGA
CGTGCATGGTGACCGTGCTCAGCGTCAGCATTGTGGCGAAGCTGTTCTCG
CACTACATCTTCGGGGTAACTTGGTTCAGGCAAGTTTTTTGGAGGCACGT
GATTCTACCGTTCTTGTTTATCAGCCGAAGGACGTACCTCAAGCACTTCT
TGGCGGCCACCATCCGACTGCTTCCGAGGATGGTTCCTGTGGTGTTCTTG
ATCTTTTTCATCACGTTCTTCTATGGCTTCATCGGGTACATCGTCTACCG
GGACGAACCGCATGTCTCTAGCCTGCTATCGGACCTGGACCTGTTCGATC
AGCCGGCATCGTCGGCGCTGACATTTCTGCGAATTTTCACCGCGAGGTCC
TTCATGCTGGACGTCGAGGAGATCTACGGTGGCAGACCTGTGAGAGCCCA
TGTTAGGAAATATATCCGTAGGAGGCTGACATACGTATGGTAA
back to top