mRNA_Ecto-sp13_S_contig83435.19705.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83435.19705.1
Unique NamemRNA_Ecto-sp13_S_contig83435.19705.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: D7FW53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW53_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.340e-43
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDSGASEVLTHRGQALGDSDEYGGGRQDDEDDDLDAEVVDQLHFGG 246
            RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDD+G SEVLTHRGQALGD+DEYGGGRQDDEDDDLDAEVVDQLHFGG
Sbjct:   75 RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDNGTSEVLTHRGQALGDNDEYGGGRQDDEDDDLDAEVVDQLHFGG 156
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: A0A836CJL6_9STRA (Nucleolar protein 14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.810e-13
Identity = 49/95 (51.58%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQ--RSRRVGMFNLGDDSG-ASEVLTHRGQALG-----DSDEYGGGR-----QDDEDDDLDAEVVDQLHFGG 246
            RFGE D  + +EEKMWAR+QK+R +  RS R   FNL DD     E+LTH+GQALG     DSD Y  GR      DD++  L+ EVV++LHFGG
Sbjct:   74 RFGEGDAGVPVEEKMWARLQKERTRAVRSGRNTAFNLDDDXXXGGELLTHKGQALGVGGGYDSDSYAAGRGAGDAADDDEAGLNKEVVNRLHFGG 168
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: W7TMX2_9STRA (Nop14-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMX2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.740e-11
Identity = 47/96 (48.96%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQRSRR--VGMFNLG------DDSGASEVLTHRGQALGDSDEY----GGGRQDDEDDD--LDAEVVDQLHFGG 246
            RFGEDD TL LEEKM  R QK+R +R+RR   G FNL       DD+     LTH+G+AL   D+Y    G    DDED    L+ E+V +LHFGG
Sbjct:  115 RFGEDDPTLSLEEKMLLRFQKERQKRARRSGAGRFNLEQEEENEDDNYGGLTLTHKGKALTAEDDYLDKDGVASSDDEDKKRGLNKEIVKELHFGG 210
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: A0A1Y1I226_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I226_KLENI)

HSP 1 Score: 58.2 bits (139), Expect = 5.470e-8
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDS---GASEVLTHRGQALGDSDEYGG---GRQDDEDDDLDAEVVDQLHFGG 246
            RFGE D +L  ++K   R QK+R  +  +   FNL DD    G  ++L HRG A G  D   G   G +D+ + +LDAE+VD+LHFGG
Sbjct:   93 RFGESDASLAEDDKAIMRYQKERLAQLNKRSRFNLKDDDVSDGEEDLLMHRGVAAGVDDFDEGDVPGEEDENNPELDAEIVDKLHFGG 180
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: A0A0C3E5F3_9AGAM (Uncharacterized protein n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3E5F3_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 1.010e-7
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDSGASEVLTHRGQALGDSDEYGG-----GRQDDEDDDLDAEVVDQLHFGG 246
            RFGE+D T+ LEE+M  R  ++R QRS +  +FNL D+    E LTH GQ+L   D++          DDE+  LD E V + HFGG
Sbjct:  112 RFGENDPTMSLEERMLERFTRER-QRSSKANVFNLDDE----EELTHYGQSLSKLDDFDNIGIPLDEDDDEEGQLDHETVHKSHFGG 193
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: A0A369JKP7_HYPMA (Serine/threonine-protein kinase ATR n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369JKP7_HYPMA)

HSP 1 Score: 57.4 bits (137), Expect = 1.040e-7
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDSGASEVLTHRGQALG---DSDEYGGGRQDDEDD--DLDAEVVDQLHFGG 246
            RFGE+D T+ LEE+M  R  K+R + SR +  FNL D+    + LTH GQ+L    D D  G G  DDE++   +DA+VV   HFGG
Sbjct:  111 RFGENDPTMSLEERMLERFTKERQRASRGIA-FNLEDE----DELTHYGQSLSKLDDFDNVGLGLDDDEEEMGQIDADVVSHTHFGG 192
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: A0A1B6CLX9_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CLX9_9HEMI)

HSP 1 Score: 57.0 bits (136), Expect = 1.200e-7
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDSGASEVLTHRGQALGDSDEYGGGRQDDEDDD--------LDAEVVDQLHFGG 246
            R GE +  +  E+++ AR   +R +  ++  MFNL +D    E+LTHRGQ LG+ +++   R DDED D        LDA+ V + HFGG
Sbjct:   83 RIGEKNSAMTSEDRLMARFTAERVKAHKKKTMFNLAED----EILTHRGQTLGEIEKFDDPRSDDEDIDDPSDSNGRLDAKFVGEAHFGG 168
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: A0A1B6E0D5_9HEMI (Uncharacterized protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E0D5_9HEMI)

HSP 1 Score: 57.0 bits (136), Expect = 1.350e-7
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDSGASEVLTHRGQALGDSDEYGGGRQDDEDDD--------LDAEVVDQLHFGG 246
            R GE +  +  E+++ AR   +R +  ++  MFNL +D    E+LTHRGQ LG+ +++   R DDED D        LDA+ V + HFGG
Sbjct:   83 RIGEKNSAMTSEDRLMARFTAERVKAHKKKTMFNLAED----EILTHRGQTLGEIEKFDDPRSDDEDIDDPSDSNGRLDAKFVGEAHFGG 168
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: S7QGE9_GLOTA (Nop14-like protein n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7QGE9_GLOTA)

HSP 1 Score: 56.2 bits (134), Expect = 2.590e-7
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDSGASEVLTHRGQALGDSDEY-GGGRQDDEDDD------LDAEVVDQLHFGG 246
            RFGE+D ++ LEE+M  R  K+R QR+ +  +FNL DD    E LTH GQ+L   D++ G G   DED+D      +D+E V   HFGG
Sbjct:  114 RFGENDPSMSLEERMLERFTKER-QRASKGDLFNLEDDDADME-LTHYGQSLSKLDDFDGAGLALDEDEDEETRGQIDSETVKAAHFGG 200
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BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Match: UPI001F5E71ED (nucleolar protein 14 homolog n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F5E71ED)

HSP 1 Score: 56.2 bits (134), Expect = 2.590e-7
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDSGASEVLTHRGQALGDSDEYGGGRQDDEDDD---LDAEVVDQLHFGG 246
            R GE +  +  E+K+ AR   ++ +  R+  +FNL DD    EVLTHRGQ L + +++   R  DE+D+   LDA  V+  HFGG
Sbjct:   85 RIGERNTAMTAEDKIMARFAAEKMRMHRKKSIFNLADD----EVLTHRGQTLSEIEKFDDPRTSDEEDEPGKLDANFVEDAHFGG 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83435.19705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW53_ECTSI1.340e-4396.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJL6_9STRA2.810e-1351.58Nucleolar protein 14 n=1 Tax=Tribonema minus TaxID... [more]
W7TMX2_9STRA7.740e-1148.96Nop14-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A1Y1I226_KLENI5.470e-843.18Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A0C3E5F3_9AGAM1.010e-743.68Uncharacterized protein n=1 Tax=Scleroderma citrin... [more]
A0A369JKP7_HYPMA1.040e-745.98Serine/threonine-protein kinase ATR n=1 Tax=Hypsiz... [more]
A0A1B6CLX9_9HEMI1.200e-738.89Uncharacterized protein (Fragment) n=1 Tax=Clastop... [more]
A0A1B6E0D5_9HEMI1.350e-738.89Uncharacterized protein n=1 Tax=Clastoptera arizon... [more]
S7QGE9_GLOTA2.590e-744.94Nop14-like protein n=1 Tax=Gloeophyllum trabeum (s... [more]
UPI001F5E71ED2.590e-740.00nucleolar protein 14 homolog n=2 Tax=Schistocerca ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83435contigEcto-sp13_S_contig83435:345..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score160.6
Seed ortholog evalue3.1e-37
Seed eggNOG ortholog2880.D7FW53
Preferred nameNOP14
Model size246
KEGG koko:K14766
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019899,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.snoRNA binding
EggNOG OGsKOG2147@1,KOG2147@2759
Cds size246
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464104.5383282-CDS-Ecto-sp13_S_contig83435:344..5901681464104.5383282-CDS-Ecto-sp13_S_contig83435:344..590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83435 345..590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83435.19705.1prot_Ecto-sp13_S_contig83435.19705.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83435 345..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83435.19705.1

>prot_Ecto-sp13_S_contig83435.19705.1 ID=prot_Ecto-sp13_S_contig83435.19705.1|Name=mRNA_Ecto-sp13_S_contig83435.19705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
RFGEDDDTLLLEEKMWARMQKDRNQRSRRVGMFNLGDDSGASEVLTHRGQ
ALGDSDEYGGGRQDDEDDDLDAEVVDQLHFGG
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mRNA from alignment at Ecto-sp13_S_contig83435:345..590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83435.19705.1 ID=mRNA_Ecto-sp13_S_contig83435.19705.1|Name=mRNA_Ecto-sp13_S_contig83435.19705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83435:345..590+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCGGCGAGGACGATGACACACTACTACTCGAGGAAAAGATGTGGGC
TCGCATGCAGAAAGACCGCAACCAGCGCAGTCGGCGTGTGGGCATGTTCA
ACCTTGGGGACGACAGCGGTGCGAGTGAAGTGCTAACTCACAGAGGGCAA
GCTTTGGGCGACAGCGACGAGTACGGAGGAGGCCGCCAGGATGATGAAGA
CGACGACCTCGATGCCGAAGTCGTCGACCAACTTCACTTCGGCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83435:345..590+

>mRNA_Ecto-sp13_S_contig83435.19705.1 ID=mRNA_Ecto-sp13_S_contig83435.19705.1|Name=mRNA_Ecto-sp13_S_contig83435.19705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83435:345..590+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCGGCGAGGACGATGACACACTACTACTCGAGGAAAAGATGTGGGC
TCGCATGCAGAAAGACCGCAACCAGCGCAGTCGGCGTGTGGGCATGTTCA
ACCTTGGGGACGACAGCGGTGCGAGTGAAGTGCTAACTCACAGAGGGCAA
GCTTTGGGCGACAGCGACGAGTACGGAGGAGGCCGCCAGGATGATGAAGA
CGACGACCTCGATGCCGAAGTCGTCGACCAACTTCACTTCGGCGGT
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