mRNA_Ecto-sp13_S_contig8340.19703.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8340.19703.1
Unique NamemRNA_Ecto-sp13_S_contig8340.19703.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: A0A6H5K2N4_9PHAE (Deacetylase sirtuin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2N4_9PHAE)

HSP 1 Score: 627 bits (1616), Expect = 2.300e-224
Identity = 309/319 (96.87%), Postives = 312/319 (97.81%), Query Frame = 1 
Query:    1 LPAGHYKGRCGAAESEVPHAKVQAEAKRLAGLLRAAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRCRECGEGLVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPAKADKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTSSITGANGDRWKWAIAVGDAADGARCGYIDRMAVKFPETELSDAVVTG 957
            L  GHYKGRCGA ESE+PHAKVQAEAKRLA LLR APIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRCRECGEG+VD LLDWEDELRDYEQAVDLSE RCRETGGVSLCLGTSLQISPSKDLPAKADKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTSSITGANGDRWKWAIAVGDAADGARCGYIDRMAVKFPET+LSDAVVTG
Sbjct:   18 LEKGHYKGRCGATESEMPHAKVQAEAKRLASLLRTAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRCRECGEGMVDALLDWEDELRDYEQAVDLSE-RCRETGGVSLCLGTSLQISPSKDLPAKADKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTSSITGANGDRWKWAIAVGDAADGARCGYIDRMAVKFPETDLSDAVVTG 335
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: A0A7S2S7M4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7M4_9STRA)

HSP 1 Score: 249 bits (637), Expect = 8.980e-78
Identity = 124/243 (51.03%), Postives = 167/243 (68.72%), Query Frame = 1 
Query:  181 GVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRCRECGEGLVDVLLDWEDEL--RDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPAKADKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTSSIT-GANGDRWKWAIAVGDAADGARCGYI 900
            G+WT  ++G  LP  E+CW+NAMPTL H A+  L   G VH VI+QN+DGLH RSG+P   L ELHGN+F E C  CG  F R+ DVGGVGF+PTGR+C  CG  L+D LLDWED+L  RD++ A   SE+ C + GG+++CLGTS+Q++P++D P  A ++VIVNLQ T KD+   +VI A+ID VMR +M  LG PIP ++R E+ ++SHT      A G +    + +GDA  GA CG++
Sbjct:    1 GIWTERSKGGQLPATERCWNNAMPTLAHRAIARLTQRGRVHCVITQNIDGLHRRSGVPNTMLAELHGNIFQEKCLACGVVFERSFDVGGVGFRPTGRQCSHCGGELIDQLLDWEDDLPERDFDLADSQSET-CSKPGGLAICLGTSMQMTPARDWPLMAHRVVIVNLQPTIKDSEVHLVIHARIDDVMRDLMHRLGEPIPEFQRVESFIISHTRLPPHSACGAQQAVELRIGDAL-GAPCGFL 241
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: A0A1Y1IDS4_KLENI (Sirtuin n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDS4_KLENI)

HSP 1 Score: 238 bits (608), Expect = 3.030e-71
Identity = 146/322 (45.34%), Postives = 197/322 (61.18%), Query Frame = 1 
Query:   16 YKGRCGAAESEVPHAKVQAEAKRLAGLLRAAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRCRECG-EG-LVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPAKA----DKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHT--SSITGANGDRWKWAIAVGDAADGARCGYIDRMAVKFPETELSDAVVTG 957
            + G+ GAAE      +V+A+ K LA L+R +   V +TGAG+ST+ GIPDFRG +G+WTL++ G+P+P     +  A P+  HMAL  LV+ G VH ++SQNVD LHLRSGIPR +L ELHGN F E+C  CG E+ R  ++  VG K TGRRC   G EG L D +LDWED L   E AV     R  +   ++LCLGTSLQI P++++P K      K+VIVNLQ T +D +AA+VI AK D VMR VM+ L + +  Y R + LVV+H+   S TG+N  RW  ++       G    ++    V F   E    ++TG
Sbjct:   16 FLGKLGAAEKFDAQDEVEAKVKELAELIRNSKHMVVYTGAGISTSCGIPDFRGPNGIWTLQSTGKPIPQATCSFAQARPSYTHMALKALVDAGKVHYIVSQNVDCLHLRSGIPRRQLAELHGNCFREVCPKCGAEYVRDFELETVGLKSTGRRCSVAGCEGRLKDSVLDWEDALPVDEVAV---ADRHSKEADLALCLGTSLQIVPARNMPFKCIPGGGKVVIVNLQATPRDKKAALVIHAKADEVMRGVMRTLNLDVRPYVRIDRLVVAHSLKHSPTGSN-RRWVLSLRSSHGPKGP-LQFVKHAKVTFLSAEHRVELLTG 332
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: UPI001C34E96D (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C34E96D)

HSP 1 Score: 233 bits (594), Expect = 4.110e-71
Identity = 134/274 (48.91%), Postives = 176/274 (64.23%), Query Frame = 1 
Query:   22 GRCGAAESEVPHAKVQAEAKRLAGLLRAAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRCRE--CGEGLVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPAKA----DKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTSSIT 825
            G+ G AE       +Q + +RLA  ++ +   V  TGAG+ST+ GIPDFRG  G+WTL+ +GQ LP+    +  AMP+L HMALV L   G +  +ISQNVDGLHLRSGIPREKL ELHGN FME C  CG E+ R  +V  +G K T RRC +  CG  L D +LDWED L   E  +D +E+ CR    V LCLGTSLQI+P+ +LP K+     K+VIVNLQKT KD +A++VI  ++D V+  VM  L + IP + R + L V  T +++
Sbjct:   16 GKVGMAEYFDSARILQEKIERLAMTIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGQALPEASLPFHRAMPSLTHMALVELEKAGILKFLISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGAEYLRDFEVETIGLKETSRRCFDVKCGAKLKDTVLDWEDALPSKE--MDAAENHCR-MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQKTPKDKKASLVIHGRVDKVIAGVMDRLNLQIPPFIRIDLLQVILTQALS 286
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: UPI001CFA0BF3 (NAD-dependent protein deacetylase SRT1-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA0BF3)

HSP 1 Score: 236 bits (602), Expect = 5.860e-71
Identity = 139/309 (44.98%), Postives = 190/309 (61.49%), Query Frame = 1 
Query:   22 GRCGAAESEVPHAKVQAEAKRLAGLLRAAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRC--RECGEGLVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPAKA----DKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTSSITGANGDRWKWAIAVGDA-ADGARCGYIDRMAVKFPE 927
            G  G  E   P   +Q + ++LA L++ +   V  TGAG+ST+ GIPDFRG  G+WTL+ +G+PLP+  + +  AMP+  HMALV L   G +  VISQN+DGLHLRSGIPREKL ELHG+ FME C  CGKE+ R  ++  +G K T RRC  ++CG  L D +LDWED L   E  ++ +ES CR    V LCLGTSLQI+P+ +LP K      K+VIVNLQKT KD +A+++I   +D V+  VM  L + IP Y R +   ++ T S++ A+     W + VG      A   +I  + V F +
Sbjct:   16 GNVGMTEFFDPPQVLQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKPLPEASQPFHRAMPSRTHMALVELEKAGILKFVISQNIDGLHLRSGIPREKLAELHGDSFMEACPSCGKEYLRDFELETIGLKETSRRCSDKKCGGKLKDTVLDWEDALPPKE--MNPAESHCRNAD-VVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLIIHGLVDKVVAGVMDLLNMRIPPYIRIDLFQITVTQSLS-ADKKFVNWTLRVGSVHGQNAPLPFIKSVEVSFSD 320
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: A0A067EAK5_CITSI (Deacetylase sirtuin-type domain-containing protein n=10 Tax=Citrus TaxID=2706 RepID=A0A067EAK5_CITSI)

HSP 1 Score: 233 bits (593), Expect = 7.120e-71
Identity = 139/319 (43.57%), Postives = 194/319 (60.82%), Query Frame = 1 
Query:   22 GRCGAAESEVPHAKVQAEAKRLAGLLRAAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRCRE--CGEGLVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPAKA----DKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTSSITGANGDRW-KWAIAVGDA-ADGARCGYIDRMAVKFPET-ELSDAVV 951
            G  G +E   P   +Q +   LA +++ +   VA TGAG+ST+ GIPDFRG  GVWTL+ +G+ +P+    +D AMP++ HMALV L   G +  VISQNVD LHLRSGIPREKL ELHGN F EIC  CG E+ R  ++  +G K T RRC +  CG  L D +LDWED L   E  ++ +E  CR    V LCLGTSLQI+P+ +LP K+     K+VIVNLQ+T KD +A++V+ A +D V+  VM+ L + IP Y R +   ++       +  D++ KWA+ VG      A   ++  + V F +  +L  A++
Sbjct:   16 GSVGMSEIFDPPHLLQQKIAELAVMIKKSKHLVAFTGAGISTSCGIPDFRGPKGVWTLQREGKGVPEASLPFDRAMPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVE--MNPAEENCR-MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAIL 331
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: A0A0D2W6D4_GOSRA (Deacetylase sirtuin-type domain-containing protein n=6 Tax=Gossypium TaxID=3633 RepID=A0A0D2W6D4_GOSRA)

HSP 1 Score: 232 bits (591), Expect = 9.450e-71
Identity = 128/249 (51.41%), Postives = 168/249 (67.47%), Query Frame = 1 
Query:   64 VQAEAKRLAGLLRAAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRCRE--CGEGLVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPAKA----DKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTE 792
            +Q + ++LA L+  +   V  TGAG+ST+ GIPDFRG  G+WTL+ +G+PLP+    +  AMP++ HMALVGL   G +  VISQNVDGLHLRSGIPREKL ELHGN FME C  CG E+ R  ++  +G K T RRC +  CG  L D +LDWED L   E  ++L+E  CR  G + LCLGTSLQI+P+ +LP K+     K+VIVNLQKT KD +A++VI   +D V+  VM+ L + IP Y R +
Sbjct:   30 LQDKIEQLAKLIEKSRHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKPLPEASLPFHRAMPSMTHMALVGLEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMETCPSCGAEYYRDFELETIGLKETSRRCSDEKCGAKLRDTVLDWEDALPPKE--MNLAEKHCR-MGDLVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVIAGVMELLNMKIPPYIRID 275
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: A0A6J5X7V5_PRUAR (Deacetylase sirtuin-type domain-containing protein n=2 Tax=fabids TaxID=91835 RepID=A0A6J5X7V5_PRUAR)

HSP 1 Score: 230 bits (586), Expect = 1.340e-70
Identity = 132/279 (47.31%), Postives = 177/279 (63.44%), Query Frame = 1 
Query:   22 GRCGAAESEVPHAKVQAEAKRLAGLLRAAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRC--RECGEGLVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPAKA----DKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTSSITGANGD 840
            G+ G  E   P   +Q + +RLA L++ +   V  TGAG+ST+ GIPDFRG  G+WTL+ +G+ LP+    +  AMP++ HMALV L   G +  VISQNVDGLHLRSGIPREKL ELHGN F+E C  CG E+ R  +V  +G K T RRC  ++CG  L D +LDWED L   E  ++L+E  CR    V LCLGTSLQI+P+ +LP K+     K+VIVNLQKT KD +A ++I   +D V+  VM  L + IP + R +   +  T +++  N D
Sbjct:   16 GQVGMTEHFDPPHVLQEKIERLAMLVQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKALPEASLPFHRAMPSMTHMALVELERAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFLETCPSCGVEYLRDFEVETIGLKETSRRCSDKKCGARLKDTVLDWEDALPSKE--MNLAEKHCR-IADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQKTPKDKKANLLIHGLVDKVISGVMDFLNLQIPPFVRIDFFQIILTQALSSGNLD 291
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: B9S9S3_RICCO (Chromatin regulatory protein sir2, putative n=4 Tax=Ricinus communis TaxID=3988 RepID=B9S9S3_RICCO)

HSP 1 Score: 235 bits (599), Expect = 1.820e-70
Identity = 143/317 (45.11%), Postives = 190/317 (59.94%), Query Frame = 1 
Query:   22 GRCGAAESEVPHAKVQAEAKRLAGLLRAAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRCRE--CGEGLVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPAKA----DKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTSSITGANGDRWKWAIAVGDA-ADGARCGYIDRMAVKFPETELSDAVV 951
            G  G AE       +Q + +RLA +++ +   V  TGAG+ST+ GIPDFRG  G+WTL+ +G+PLP+    +  AMP++ HMALV L   G V  +ISQNVDGLHLRSGIPREKL ELHGN FME C  CG E+ R  +V  +G K T RRC +  CG  L D +LDWED L   E     +E  CR  G + LCLGTSLQI+P+ +LP K      K+VIVNLQKT KD +A++VI   +D V+  VM  L + IP Y R + L +  T S++ A+     W + +    A  A   +I  + V F +T+   A +
Sbjct:   16 GNVGMAEFFDSSYVLQEKIERLAKMIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKPLPEASLPFHRAMPSITHMALVELERAGIVKFIISQNVDGLHLRSGIPREKLAELHGNSFMESCPSCGAEYFRDFEVETIGLKETSRRCSDVKCGAKLRDTVLDWEDALPPKEMLP--AEKHCR-MGDLVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVIAGVMHLLSMQIPPYVRIDLLQIIVTRSLS-ADKRFVNWTLRIASVHALKATLPFIKSIEVTFSDTQKYKAAI 328
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Match: A0A8D0C4N0_9SAUR (Sirtuin 6 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0C4N0_9SAUR)

HSP 1 Score: 231 bits (589), Expect = 2.450e-70
Identity = 134/278 (48.20%), Postives = 178/278 (64.03%), Query Frame = 1 
Query:   19 KGRCGAAESEVPHAKVQAEAKRLAGLLRAAPIAVAHTGAGLSTAAGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFVHAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGVGFKPTGRRC--------RECGEGLVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLCLGTSLQISPSKDLPA----KADKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVMQELGIPIPVYRRTETLVVSHTS 816
            KG+CG  E   P  +V+ +A+RLA L+R A   V HTGAG+ST++GIPDFRG +GVWT+E QG  +P ++  ++NA P+  HMAL+GL   G +  ++SQNVDGLH+RSG PR+KL ELHGN+F+E C  CGK++ R   VG +G KPTGR C        R C   L+D +LDWED L D +  +    SR  +   +S+ LGTSLQI PS DLP     K  K+VIVNLQ+T  D  A + I A +D V+  VM+ LG+ IP +  T   VV  +S
Sbjct:   15 KGKCGLPEFFDPPEEVEQKARRLADLIRNASNVVFHTGAGISTSSGIPDFRGPNGVWTMEQQGL-VPRFDTTFENARPSKTHMALLGLQRAGILKFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECMKCGKQYVRDKVVGTMGLKPTGRLCDVSKHRGLRACRGKLMDTILDWEDSLPDRDLNLASEASRRAD---LSVTLGTSLQIKPSGDLPLLTKKKGGKLVIVNLQQTKHDKHADLRIHAYVDDVIEKVMKHLGVEIPEW--TGPXVVEESS 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8340.19703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2N4_9PHAE2.300e-22496.87Deacetylase sirtuin-type domain-containing protein... [more]
A0A7S2S7M4_9STRA8.980e-7851.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Y1IDS4_KLENI3.030e-7145.34Sirtuin n=1 Tax=Klebsormidium nitens TaxID=105231 ... [more]
UPI001C34E96D4.110e-7148.91Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]
UPI001CFA0BF35.860e-7144.98NAD-dependent protein deacetylase SRT1-like n=1 Ta... [more]
A0A067EAK5_CITSI7.120e-7143.57Deacetylase sirtuin-type domain-containing protein... [more]
A0A0D2W6D4_GOSRA9.450e-7151.41Deacetylase sirtuin-type domain-containing protein... [more]
A0A6J5X7V5_PRUAR1.340e-7047.31Deacetylase sirtuin-type domain-containing protein... [more]
B9S9S3_RICCO1.820e-7045.11Chromatin regulatory protein sir2, putative n=4 Ta... [more]
A0A8D0C4N0_9SAUR2.450e-7048.20Sirtuin 6 n=1 Tax=Salvator merianae TaxID=96440 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8340contigEcto-sp13_S_contig8340:391..6308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score630.9
Seed ortholog evalue3.1e-178
Seed eggNOG ortholog2880.D7G3Z0
Preferred nameSIRT6
Model size960
KEGG rclassRC00497,RC00976,RC00977,RC01041,RC01046,RC03072
KEGG koko:K01703,ko:K11416
KEGG ReactionR03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170
KEGG Pathwayko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,ko04714,ko05230,map00290,map00660,map00966,map01100,map01110,map01210,map01230,map04714,map05230
KEGG ModuleM00432,M00535
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000166,GO:0000228,GO:0000578,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0001672,GO:0001936,GO:0001938,GO:0003002,GO:0003006,GO:0003007,GO:0003241,GO:0003245,GO:0003247,GO:0003674,GO:0003682,GO:0003712,GO:0003714,GO:0003824,GO:0003950,GO:0003956,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005694,GO:0005720,GO:0005724,GO:0005737,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006259,GO:0006281,GO:0006282,GO:0006284,GO:0006325,GO:0006355,GO:0006464,GO:0006471,GO:0006473,GO:0006475,GO:0006476,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007350,GO:0007351,GO:0007389,GO:0007507,GO:0007517,GO:0007568,GO:0008134,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008285,GO:0008340,GO:0008358,GO:0008595,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010259,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010563,GO:0010569,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010675,GO:0010677,GO:0010827,GO:0010829,GO:0010847,GO:0012505,GO:0014706,GO:0016043,GO:0016049,GO:0016569,GO:0016570,GO:0016573,GO:0016575,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0016810,GO:0016811,GO:0017136,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019213,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030719,GO:0030808,GO:0030809,GO:0030811,GO:0030812,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031445,GO:0031453,GO:0031647,GO:0031648,GO:0031933,GO:0031935,GO:0031937,GO:0031938,GO:0031940,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032129,GO:0032204,GO:0032206,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032991,GO:0033043,GO:0033044,GO:0033500,GO:0033554,GO:0033558,GO:0034622,GO:0034641,GO:0034762,GO:0034763,GO:0034979,GO:0035265,GO:0035282,GO:0035601,GO:0035770,GO:0036094,GO:0036211,GO:0036464,GO:0040007,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0042593,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043467,GO:0043470,GO:0043543,GO:0043933,GO:0043966,GO:0043970,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045495,GO:0045765,GO:0045766,GO:0045799,GO:0045820,GO:0045892,GO:0045912,GO:0045934,GO:0045935,GO:0045936,GO:0045980,GO:0046324,GO:0046325,GO:0046483,GO:0046872,GO:0046914,GO:0046969,GO:0048037,GO:0048145,GO:0048146,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048644,GO:0048729,GO:0048731,GO:0048738,GO:0048856,GO:0048869,GO:0048878,GO:0050662,GO:0050678,GO:0050679,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051052,GO:0051054,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051193,GO:0051195,GO:0051196,GO:0051198,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051276,GO:0051287,GO:0051704,GO:0051716,GO:0055008,GO:0055017,GO:0060255,GO:0060293,GO:0060415,GO:0060419,GO:0060537,GO:0060560,GO:0060688,GO:0060968,GO:0061061,GO:0061647,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070403,GO:0070925,GO:0070932,GO:0071704,GO:0071826,GO:0071840,GO:0072091,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0098687,GO:0098732,GO:0140096,GO:0140110,GO:1900371,GO:1900372,GO:1900542,GO:1900543,GO:1901265,GO:1901342,GO:1901360,GO:1901363,GO:1901564,GO:1902275,GO:1902679,GO:1902732,GO:1903506,GO:1903507,GO:1903578,GO:1903579,GO:1903863,GO:1904018,GO:1905269,GO:1905330,GO:1905332,GO:1905547,GO:1905549,GO:1905553,GO:1905555,GO:1905562,GO:1905564,GO:1990619,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000648,GO:2000779,GO:2001020,GO:2001141,GO:2001169,GO:2001170,GO:2001252
Exons7
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K18 specific)
EggNOG OGsCOG0846@1,KOG1905@2759
EC2.4.2.31,4.2.1.33,4.2.1.35
Cds size960
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8340.19703.1prot_Ecto-sp13_S_contig8340.19703.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8340 391..6308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464104.4017158-CDS-Ecto-sp13_S_contig8340:390..5761681464104.4017158-CDS-Ecto-sp13_S_contig8340:390..576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8340 391..576 -
1681464104.4174802-CDS-Ecto-sp13_S_contig8340:1403..15171681464104.4174802-CDS-Ecto-sp13_S_contig8340:1403..1517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8340 1404..1517 -
1681464104.4315197-CDS-Ecto-sp13_S_contig8340:2722..28161681464104.4315197-CDS-Ecto-sp13_S_contig8340:2722..2816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8340 2723..2816 -
1681464104.440991-CDS-Ecto-sp13_S_contig8340:3493..35931681464104.440991-CDS-Ecto-sp13_S_contig8340:3493..3593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8340 3494..3593 -
1681464104.451166-CDS-Ecto-sp13_S_contig8340:3975..41131681464104.451166-CDS-Ecto-sp13_S_contig8340:3975..4113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8340 3976..4113 -
1681464104.4614062-CDS-Ecto-sp13_S_contig8340:4874..50481681464104.4614062-CDS-Ecto-sp13_S_contig8340:4874..5048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8340 4875..5048 -
1681464104.4722123-CDS-Ecto-sp13_S_contig8340:6154..63081681464104.4722123-CDS-Ecto-sp13_S_contig8340:6154..6308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8340 6155..6308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8340.19703.1

>prot_Ecto-sp13_S_contig8340.19703.1 ID=prot_Ecto-sp13_S_contig8340.19703.1|Name=mRNA_Ecto-sp13_S_contig8340.19703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp
LPAGHYKGRCGAAESEVPHAKVQAEAKRLAGLLRAAPIAVAHTGAGLSTA
AGIPDFRGKDGVWTLENQGQPLPDYEKCWDNAMPTLGHMALVGLVNEGFV
HAVISQNVDGLHLRSGIPREKLCELHGNLFMEICSGCGKEFRRTADVGGV
GFKPTGRRCRECGEGLVDVLLDWEDELRDYEQAVDLSESRCRETGGVSLC
LGTSLQISPSKDLPAKADKMVIVNLQKTCKDARAAIVIRAKIDAVMRCVM
QELGIPIPVYRRTETLVVSHTSSITGANGDRWKWAIAVGDAADGARCGYI
DRMAVKFPETELSDAVVTG*
back to top

mRNA from alignment at Ecto-sp13_S_contig8340:391..6308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8340.19703.1 ID=mRNA_Ecto-sp13_S_contig8340.19703.1|Name=mRNA_Ecto-sp13_S_contig8340.19703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8340:391..6308- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCCGGCAGGCCACTACAAGGGACGATGCGGGGCTGCCGAGTCGGAGGT
GCCACACGCGAAGGTGCAAGCGGAAGCCAAGAGGCTCGCGGGCCTGCTGA
GGGCTGCGCCCATCGCGGTGGCTCACACGGGAGCAGGCTTGTCTACAGCT
GCGGGTGAGAAGATGTGGAAGTGAGTGTGTGTTTCTTTTTCGCATCGACC
GCGCTAACCGGTTGACCAATGAAATGACGCCAGTATCAGGGCGGTTGAAA
AAACTAGATGCTTCTAAAGATCACAGTCTGGTACACCCTGTGACAGAGCG
TCATGGGGGCGTCTACGCCGTTCTTGGTTAGCTGCGTTCGTGCTGTTTGT
TTTCGCCATTAATAATGTAGCGTCGACCGTGCTAACCGGCTTACCATTGA
AAATACGTCAGTCTCAGTGCGGTTGAAAACAACAAATGTGTTCGTCCTTA
TCTTCACACCTTCCGGGATCCATGTCTGGCGTGTCAGCCGGGATCGATCA
CGCAGGAGCTTTTCGTTTTGGAAGATTGTTTTTTGTCCTTTTCACCCCAC
TCTTCCTCCCGCTGCGCTTGCATTAGGCTTCGCTCCGAAGATGAGTTTTC
GCTCCGGAAAATCGTCAACGTGCACAATACTCTGGGCTCGAGGCAGCGGG
CAGAACTCAACCGCATCCTACTTCCGGACATTACTATCCTACGTATAGAT
TCCCGTCATACACTATGCAATGGTTATATCGTCCTGGTGGCCGTCGCACC
CGACACAGGGAAACGCGAATCTATTGTCGTCTTCGCAAAGGGGAGAGACG
GGGATTGGAGGGGAGGTTTGGATATGCCTTGGCAGCGAGCGCATCCAAGG
ACACCGGCCTTATCAGGCACCATATGATAAGATAGCGCACCACGACAAAA
GCTTTTGCAGCAGCTGCTGCTGCATTGTCGAGATGTTCGCCCTCTCTCCA
TGCGCGCACTGGCGACTCATTGTGTCGCTCGTACCCATCAATCGTTCCCG
GATTGACTTCGCTACGATATTATCCTTGGTCTATGCAAAAGAGGAGGGGG
TTTCGTTTCCCTGCCCCCAACCCCCAACCCCACCCCGTGCGCCATACTGA
AACCAAGATAAACATCATCGCGAAGGCTACCATTATGGCGAGACTTGTTA
GGCGTGTGAGAAAAAAACATGATCATAACCATGGCTCAAGGCACTTGTTT
CTTATTTCTTGTTTCACGAACGAGCGCGATAATGTCCCTTTTGCCCGCAT
GGCGAATAAGGCATCCCGGACTTCAGGGGCAAAGACGGGGTCTGGACCTT
GGAGAACCAAGGGCAGCCTTTACCGGACTACGAGAAGTGCTGGGACAACG
CCATGCCCACGCTCGGTCACATGGCGCTGGTGGGGCTAGTGAACGAGGGC
TTCGTGCACGCGGTGATCAGCCAAAACGTCGACGGTGAGAGGGGGAGAGG
TGGAGAGAGAGACAGAGACAGAGACAGAAAGAGAGAGGCAGAGAGAGAGG
GAGAGAGACAGAGAGAAAGAGAGAGCGAGGGAGGGAGAGAGAGCTGGAGA
GAGACAGAGTGGCGGAGAGAGAGACAGAGACAGAGAAAGAGACAGAAAGA
GAGCGAGGAAGGTACACTGGGATGATGGAATGACTTCTACTGCGTAAGGA
CCACGTCCTTCTCTCAAGCAATGGCTTACGTCACGAAATGTTCTGTTTTT
GATTTGTTTTTTGTTTCTTTGGTTAAGCAACACCCACGCGCCGACAGCGG
TGAGTCCTCTCTCCCTTTTAACGCACCAAGACCCTTCCTGTCTTGTTTGT
GCTTGCGACTCGATGATATATCACTCCGCGTTATGATAACTTTTGTTTGT
TGACACGATGCGTGCGACGTACAGGGGGTCCTTTCCATGCATCCCCGCAC
ACAGAACGCTATGTTGTTGGTGACTCATCCACAGAAACTTGGCAGTCATG
TAGGAATATTGATATAGCCCCGGAAAAGTCAAAATCTAAGAACGTGAGCA
CCATTTGTAAGCTATGGCAAGAACCCCTACACTAATATCTTTATGACCAC
CATTCGTAGCATGACACTAGGAATACAGTAAGAACCCCAGCCCCGGCCAA
AGCTTTAACAGAGGTTCTGACGTGCGGGCGCTCATTCTGCATCTCATTTT
TGTTCTTATTTTTTTCATGTTCGGGTGTGCATTTGCTCTTTGCAGGGCTG
CATCTGCGCTCCGGTATCCCGCGTGAGAAGCTGTGCGAGCTGCACGGCAA
CCTCTTCATGGAGATTTGCTCGGGCTGCGGGAAGGAGTTTCGGCGCACGG
CGGACGTTGGGGGTGTGGGCTTTAAGCCAACAGGTGAGGCCTTCGAATCG
ACGTCCATGACAGCAACAGGTGGTGTAGTGGAGTGGTGGACAAGCTGCAG
CAGCAGTGGCAGCGTCTGTAGTGTACGCAACAGTAGCAGTTGTCATTGAG
GAGTGGTGTAGGATCAAGAGTCAGCAGTAGCACTGGCAGCAGCAGCAGCA
GCAGCAGCAGATGTATCGGACGCACTAGTAGCCGTCGTGGTCGTAGAACG
GGCAGCCATGTGCCCGTGCTTCTGTAGCAGCCTTACCGCATGTTGATGCC
ACGGCTCTTACTCTACCATTGGTACCCTCACAGACACCTGGTTGTGTGTG
AGATAGAGACGCACCCACCACCCTGCGCGTTTCTAATAAACACCCGCACA
CACGCACACACACAGGTAGGCGGTGCCGTGAGTGTGGAGAAGGGCTCGTT
GACGTACTCCTTGACTGGGAGGACGAGCTGAGAGACTACGAGCAGGCTGT
GGACCTCTCCGAAAGGTCGGTCCATTTCGGTTTCTCACCCGACTGCCACA
GCCCATTCGCAGCAGCGCGTAACGGCCTTTGTTCGCTGGCGAGAAATCCC
GACTACCGTGATCCACACAAGATCACACACCCCGACAACAGATACCCCGC
CACATACACAAACAATACCACCCCCGGTGATGATAGTCTTGCGGCTCAAC
ATGAGCCCGAAACTTAAGAATGATCTCAGATCAAGCGATAGGGTCAGATG
CCGCCCCCGCCCACACCTGAGAGAAACACAAGGGTGGTGGTATTTTTACC
GCCGAAGTGTTTTTTATCACCGGGGGTGTTATCTTGTGCGGTATGTCTCG
AGGAGCACGCGCGGGACTGTTCGCAAGTTGTGGCATTGGTGTTCGGTCAC
TTTCAGTAGCCTACGCAGCTTGTATTATACAAACATGTTGGATAAAGCAT
GGAATCGATGGAATTTCGGGGGTTAGGGGTCTTCGTGTCCCCTACCCCTC
TATTTCATAGATAAGATTAATTTTCTCGCGTAGGCATGGAAGTGCGCCGC
TTGCAGCATTTCGGCGCTCGCTCTTTAACGATAGCGTGGTCTAGTTGGAC
GCGTTCTTGTGGTACATAGTTCATGTTTTGTGAGAAGCTAAAGTACTGTG
GTGTTTCGAGCTGATGGCGATGCGACTTGACTTCTTTTGCAGTAGGTGCC
GCGAAACCGGGGGTGTTAGCCTCTGCCTGGGGACTTCTCTGCAGATCTCC
CCGTCCAAAGACCTTCCCGCCAAGGCCGACAAGATGGTACGTGGTGCGAA
GACCGCGCTGAGCTCACTCCTCTCCCTGTGTGTGTTTGTGTCTGTTTTGA
AAAGTATTCACAGTCTCACAGAAAGAGTACCCGTTCGAGATATAACCGCA
GTCGAAAGGGATGTATGTGCTGAAGTATTTTCAGTGGGTGGAGGGAAACC
GGCTGGAAACTGTATATTTTTGTTCTTTCGGATCGACCGCGCTAACCGGC
TGACAAATGAAAAAGACGTCCGTCTAAGTGGTGCGGCTGAAAACAGAAAA
GGCTTGGAAAGTGCCATGACCAATGCGTTGGACCCCGTGACGAGGGGCGT
CATGGGAGAGGCTAAAGCCGTTCTCCACTTTTGAGTGTGTGCGTGTTTGT
GTCCCCCTGTGTGTGCACGCATGTGACGCCTGTAGACCCTTCCGGCACCC
TACTTGCCTAGTCCACATTGACGAAGGTTTTATTCGTGCGATGAAATGAA
GCCGGTCACGAAAGAGCAGACACACGCTTGCTTGTGCTTGGCCTCCCACG
CTCAACTCTTTTGGCTTTTTGGGGCAGTGACGTTGTCCGCAAGTTTGGTG
TCATGGGAGAGGCTAAAGCCGTTCTCCACTTTTGAGTGTGTGCGTGTTTG
TGTCCCCCTGTGTGTGCACGCATGTGACGCCTGTAGACCCTTCCGGCACC
CTACTTGCCTAGTCCACATTGACGAAGGCTTTATTCGTGCGATGAATTAA
AGCCGGTCACGAAAGAGCAGACGCACGCTTGCTTGTGCTTGGCCTCCCAC
GCTCAACTCTTTTGGCTTTTGGGGGCAGTGACGTTGTCCGCAAGTTTGGC
ACCCTCTTTGGGGGGACATGCGTACCGACCGCTCCAGTCCTAGTCAATGC
TCGGTGCCACTTCTCAGGTAGTGACGTATGTATTGTCTTGTGTGTCGGCT
GAAGCCTCAAGTATGCCGAGGAATTTTGTACGGTACAGCTACAGTATACC
CTCTAATTCCCTTTTGTGGAGGAACCGGGGGGGAAAGAGTGGTCACACCC
AAGGCGACACCGCTGTGCAAGCGTCTCGATGCATGCGTGCATGTTCCACA
ACCTACCAGCAGATCGCTTCCCAGCACGTATTCACGCCTTGTTTACTGGA
AACACCTTTTCAGCGTGGTTGGCTGTGGTTCGGCGTGAACCAGTCAATCA
ATCAATCAATCGATTGCTGTCCCGTGCGTTCCACCCCCTAGGTCATCGTC
AACCTCCAGAAGACCTGTAAGGATGCGCGAGCTGCGATCGTCATCCGCGC
CAAGATCGACGCGGTCATGCGCTGCGTCATGCAGGAGCTGGGCATCCCGA
TCCCGGTACGTTTCGACAGGCCGGGACGAAGATGATGGTGTGTGTATGTC
TCTGTGGTGTGCATCCATCCGGTGCCGGCTGGATGGCCCATGAAAACAAA
CCCAAGTACATACGCTCACAGGGAAAATGCCCGCCAGAACCGCTTTCTAG
CGCGCTCGTGTTTCTTTTTGGCATTGACGACCGCGCAGCAGGCAAGACTG
ATGGAGATATGATCGGTGTAGTGTTTTTCTGGGTCCGTGTTTTTTCCGTT
GCCTTGACTTCTGGAAAGCTGTACACCCTTTTGGGGTAGTAGCTGGTCGG
TGACCCCGGAACGAAGGCGTCCGCATTAGTTGGACCCGTGATGTACCGAT
CGGAGTGTGAAAACAACAGCAACAATCATATCAACAACAAGTTATGCGGC
GGGAAGGACAGAAACGCCGACGTGCCCTCCCCCGGGGCCGAGAAGACGCG
AAGAAGGAGAGCGAGAGCCAGGGGAAGGGAGAATGAGCGACGGGAGGTTG
CCGCAACTCTACCGACATTCATATTTTTTGTTTGGATTCATTCGCCTTCC
CTCTGGTCGGTCTCGAGCTATTCAGCGCGAAGCTAGGAAAGTGGCGACTT
TTCTTTACTGCGAGAGTTAGGAGGGGACAGATTGCCGTAACTCTGCCGGC
ATTCTATTTTTAGTCTGGTTCGTTCGCCACCTCTCTCGTCCATCTCGAAC
TACTCCACGCAATGCACAAGGCGAGTTTTTACCACGTCAGACAATAGTTT
TACCGTCATGTTTAGAGAGCATCGCATTGTCGGGCACCTTGTCAAACCCA
CGAGACGTTTTGGCCGCCCGTTGACGCGACAGGTTTATCGGCGGACGGAG
ACCCTAGTGGTGAGCCACACGTCCAGCATCACTGGCGCCAATGGAGACCG
ATGGAAGTGGGCCATAGCCGTCGGGGACGCCGCGGATGGGGCGCGATGCG
GCTACATAGATAGGATGGCCGTGAAGTTTCCTGAGACCGAGCTCTCAGAT
GCTGTCGTTACGGGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8340:391..6308-

>mRNA_Ecto-sp13_S_contig8340.19703.1 ID=mRNA_Ecto-sp13_S_contig8340.19703.1|Name=mRNA_Ecto-sp13_S_contig8340.19703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8340:391..6308- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCCGGCAGGCCACTACAAGGGACGATGCGGGGCTGCCGAGTCGGAGGT
GCCACACGCGAAGGTGCAAGCGGAAGCCAAGAGGCTCGCGGGCCTGCTGA
GGGCTGCGCCCATCGCGGTGGCTCACACGGGAGCAGGCTTGTCTACAGCT
GCGGGCATCCCGGACTTCAGGGGCAAAGACGGGGTCTGGACCTTGGAGAA
CCAAGGGCAGCCTTTACCGGACTACGAGAAGTGCTGGGACAACGCCATGC
CCACGCTCGGTCACATGGCGCTGGTGGGGCTAGTGAACGAGGGCTTCGTG
CACGCGGTGATCAGCCAAAACGTCGACGGGCTGCATCTGCGCTCCGGTAT
CCCGCGTGAGAAGCTGTGCGAGCTGCACGGCAACCTCTTCATGGAGATTT
GCTCGGGCTGCGGGAAGGAGTTTCGGCGCACGGCGGACGTTGGGGGTGTG
GGCTTTAAGCCAACAGGTAGGCGGTGCCGTGAGTGTGGAGAAGGGCTCGT
TGACGTACTCCTTGACTGGGAGGACGAGCTGAGAGACTACGAGCAGGCTG
TGGACCTCTCCGAAAGTAGGTGCCGCGAAACCGGGGGTGTTAGCCTCTGC
CTGGGGACTTCTCTGCAGATCTCCCCGTCCAAAGACCTTCCCGCCAAGGC
CGACAAGATGGTCATCGTCAACCTCCAGAAGACCTGTAAGGATGCGCGAG
CTGCGATCGTCATCCGCGCCAAGATCGACGCGGTCATGCGCTGCGTCATG
CAGGAGCTGGGCATCCCGATCCCGGTTTATCGGCGGACGGAGACCCTAGT
GGTGAGCCACACGTCCAGCATCACTGGCGCCAATGGAGACCGATGGAAGT
GGGCCATAGCCGTCGGGGACGCCGCGGATGGGGCGCGATGCGGCTACATA
GATAGGATGGCCGTGAAGTTTCCTGAGACCGAGCTCTCAGATGCTGTCGT
TACGGGGTGA
back to top