mRNA_Ecto-sp13_S_contig10169.197.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10169.197.1
Unique NamemRNA_Ecto-sp13_S_contig10169.197.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 1.130e-80
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA 396
            GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA
Sbjct: 1164 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA 1295
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2AZM0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZM0_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.160e-73
Identity = 109/132 (82.58%), Postives = 124/132 (93.94%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGEA 396
            GGNA+LSLD+ EEPY GG+K+N MPPMKRFRDM+QLSGGEKTVAAL LLFAIHS+RPAPFFVMDE+DAALDN+NVKKVCNYI+ RSGDFQ IVISLKDMFYE+AD+LVGICRD +TNSSRTLTLDLE+ G++
Sbjct:  183 GGNAYLSLDDTEEPYAGGIKYNTMPPMKRFRDMDQLSGGEKTVAALALLFAIHSYRPAPFFVMDEVDAALDNVNVKKVCNYIKQRSGDFQCIVISLKDMFYEQADSLVGICRDVSTNSSRTLTLDLESFGDS 314
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2CTE2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTE2_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.330e-72
Identity = 107/131 (81.68%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDLEAVGE 393
            GGNA+LSLD+ EEPYLGG+K+NAMPPMKRFRDMEQLSGGEKTVAAL  LF+IHSFRPAPFFVMDE+DAALDN+NVKKVCNYI+ RS +FQ IVISLKD+FYE+AD+LVGICRD  TNSSRTLTLDL    E
Sbjct:   33 GGNAYLSLDDTEEPYLGGIKYNAMPPMKRFRDMEQLSGGEKTVAALAFLFSIHSFRPAPFFVMDEVDAALDNVNVKKVCNYIKQRSHEFQCIVISLKDIFYEQADSLVGICRDAGTNSSRTLTLDLSQFDE 163
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2V1Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q0_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.060e-71
Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRS--GDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378
            GGNA+LSLD+ EEP+ GGVKFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDE+DAALDNINVKKVCNYI+ RS  G  QSIVISLKDMFYEKAD+LVGICRD  TNSSRTLTLDL
Sbjct:   37 GGNAYLSLDDQEEPFHGGVKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIHSFRPAPFFVMDEVDAALDNINVKKVCNYIRQRSTDGGCQSIVISLKDMFYEKADSLVGICRDVGTNSSRTLTLDL 164
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2E6E8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6E8_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.590e-71
Identity = 106/126 (84.13%), Postives = 117/126 (92.86%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378
            GGNA+LSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDE+DAALDN+NV KVCNYI+ RSGDFQ IVISLKDMFYE++ +L+GICRD  TNSSRT+TLDL
Sbjct:   45 GGNAYLSLDDAEEPYRGGMKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIHSFRPAPFFVMDEVDAALDNVNVLKVCNYIRQRSGDFQCIVISLKDMFYERSHSLIGICRDVGTNSSRTMTLDL 170
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S2SBG7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SBG7_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.790e-70
Identity = 108/126 (85.71%), Postives = 118/126 (93.65%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378
            GG AFLSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDEIDAALDN+NV KVCNYI+ RSGDFQ IVISLKDMFYE++++L+GICRD ATNSS+TLTLDL
Sbjct:  142 GGKAFLSLDDSEEPYRGGMKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIHSFRPAPFFVMDEIDAALDNVNVLKVCNYIRQRSGDFQCIVISLKDMFYERSNSLIGICRDVATNSSKTLTLDL 267
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A7S3YCQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCQ0_HETAK)

HSP 1 Score: 221 bits (564), Expect = 1.850e-69
Identity = 106/126 (84.13%), Postives = 118/126 (93.65%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378
            GG A+L+LD+PEEPYL GVKFNAMPPMKRFRDMEQLSGGE+TVA+L LLF++HSFRPAPFFVMDEIDAALDNINVKKVCNYI+ RSGD QSIVISLKDMFYE+AD+LVG+CRD AT  SR+LTLDL
Sbjct:  229 GGTAYLTLDDPEEPYLAGVKFNAMPPMKRFRDMEQLSGGERTVASLALLFSVHSFRPAPFFVMDEIDAALDNINVKKVCNYIKRRSGDCQSIVISLKDMFYERADSLVGVCRDRATMGSRSLTLDL 354
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: K0R031_THAOC (SMC_N domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R031_THAOC)

HSP 1 Score: 219 bits (558), Expect = 1.490e-66
Identity = 104/126 (82.54%), Postives = 118/126 (93.65%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378
            GGNA+LSLD+ +EPYL G+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFF+MDE+DAALDN+NV KVCNYIQ RS DFQ IVISLKDMFYE++++LVGICRD ++NSSRT+TLDL
Sbjct:  383 GGNAYLSLDDTDEPYLSGMKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIHSFRPAPFFIMDEVDAALDNVNVLKVCNYIQQRSSDFQCIVISLKDMFYERSESLVGICRDVSSNSSRTMTLDL 508
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A6T7JRG2_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JRG2_9STRA)

HSP 1 Score: 225 bits (574), Expect = 8.350e-66
Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378
            GGNA+LSLD+ EEPYLGG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSFRPAPFFVMDEIDAALDN+NV KVCNYI+ RSGDFQ IVISLKDMFYE++ +LVGICRD  TNSSRTLTLDL
Sbjct: 1148 GGNAYLSLDDTEEPYLGGMKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIHSFRPAPFFVMDEIDAALDNVNVLKVCNYIRQRSGDFQCIVISLKDMFYERSQSLVGICRDVGTNSSRTLTLDL 1273
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BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Match: A0A8J9TE18_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TE18_PHATR)

HSP 1 Score: 206 bits (525), Expect = 1.200e-65
Identity = 103/127 (81.10%), Postives = 112/127 (88.19%), Query Frame = 1 
Query:    1 GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSG-DFQSIVISLKDMFYEKADALVGICRDHATNSSRTLTLDL 378
            GGNA+LSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIHSF PAPFF+MDEIDAALDN+N++KVCNYI+ RS  DFQ IVISLKDMFYE +  LVGI RD  TNSS TLTLDL
Sbjct:   71 GGNAYLSLDDAEEPYKGGIKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIHSFHPAPFFIMDEIDAALDNVNLRKVCNYIKQRSQTDFQCIVISLKDMFYEHSQGLVGIYRDVGTNSSHTLTLDL 197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10169.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP2_ECTSI1.130e-80100.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S2AZM0_9STRA1.160e-7382.58Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CTE2_9STRA1.330e-7281.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2V1Q0_9STRA1.060e-7187.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2E6E8_9STRA2.590e-7184.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2SBG7_9STRA1.790e-7085.71Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3YCQ0_HETAK1.850e-6984.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0R031_THAOC1.490e-6682.54SMC_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A6T7JRG2_9STRA8.350e-6687.30Structural maintenance of chromosomes protein n=1 ... [more]
A0A8J9TE18_PHATR1.200e-6581.10Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10169contigEcto-sp13_S_contig10169:4787..5968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score268.1
Seed ortholog evalue2.2e-69
Seed eggNOG ortholog2880.D8LRP2
Preferred namesmc1
Model size399
KEGG koko:K06636
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryother localisation
GOsGO:0000793,GO:0000819,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008278,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0022402,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0071840,GO:0098813
Exons3
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0018@2759
Cds size399
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.406103-CDS-Ecto-sp13_S_contig10169:4786..48941681462512.406103-CDS-Ecto-sp13_S_contig10169:4786..4894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10169 4787..4894 -
1681462512.4212887-CDS-Ecto-sp13_S_contig10169:5194..53241681462512.4212887-CDS-Ecto-sp13_S_contig10169:5194..5324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10169 5195..5324 -
1681462512.4327917-CDS-Ecto-sp13_S_contig10169:5807..59681681462512.4327917-CDS-Ecto-sp13_S_contig10169:5807..5968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10169 5808..5968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10169.197.1prot_Ecto-sp13_S_contig10169.197.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10169 4787..5968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10169.197.1

>prot_Ecto-sp13_S_contig10169.197.1 ID=prot_Ecto-sp13_S_contig10169.197.1|Name=mRNA_Ecto-sp13_S_contig10169.197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
GGNAFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLF
AIHSFRPAPFFVMDEIDAALDNINVKKVCNYIQGRSGDFQSIVISLKDMF
YEKADALVGICRDHATNSSRTLTLDLEAVGEA*
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mRNA from alignment at Ecto-sp13_S_contig10169:4787..5968-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10169.197.1 ID=mRNA_Ecto-sp13_S_contig10169.197.1|Name=mRNA_Ecto-sp13_S_contig10169.197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:4787..5968- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAAACGCCTTCCTGAGCCTCGACAACCCGGAGGAGCCGTACCTTGG
AGGAGTCAAGTTCAACGCCATGCCCCCAATGAAGCGCTTCCGCGACATGG
AGCAGCTGTCGGGCGGCGAGAAGACGGTGGCGGCGCTCGGCCTCCTTTTC
GCGATACACAGGTGTCGCGATGTTGTTGTTGCTCGTCAGTGGTGGAACGA
CCTGCTGGGCCTGCTGGTTTGACCGACCCAAACGAAGTTTTTTTGGTCGT
CCCTTCTGGCCTTTGGGGTTTGGGTGTTGGTATGTAGTGACAAGCGATGA
GGATGTCCCACTCTGACGGCCTACGACACAGGGACGGGCACTTTGACTGC
ATGCGTTGGGCAAGTAGGAGCATTTTCTGTTGGCAACTGGTGGGTTTAAC
TCATCGACAGAAAATTGGCCCCACGGATTTGAACAATTGCCCCACACCCC
GCCCCTTCAGTCGCTTTCCTTACTTTTTGTTTTGCGGGGTGTCACTCGTT
CGTCCCTTCTGTTGTTTATTATCCTTTTTTCTTACCGGAGCGTTATTCTT
TCGCTCCCTTCTTTCGGTCATCGTGTCTATTTCTGCGGTGCCTCACTTCT
TCACCCCTTCTCTCGCCCATCTTTTTTTTTTTTGCGGTACCCAGCTTCCG
TCCGGCACCGTTTTTTGTCATGGACGAGATTGACGCTGCCCTAGACAACA
TCAACGTGAAGAAGGTGTGCAACTACATCCAGGGGAGGAGCGGCGACTTC
CAATCCATCGTCATCTCCCTCAAGGTATTGGATTGTCGGCATGGGAACCT
CCCGTTTCACATTGGTGCTGTCTTTTTTTCCCTGTTGTTGCTGCTACTCT
CCTCCTGCTTTGTTGCGCGTTGGTTGAATTCCATCGTCCCGTTGTCCATA
CCGTCCCCTTCCGATTCCACTGCACCACTTTATGTGTGCCCGCGCGCCCT
ACGCCACGGCGTTCTCCGTCCCGACTTTGAATGTGGGGTCGGGCCTCTGT
GCTCAAACACTGCCGTTCCCGTAGGACGGGACATGGTGAAGACTGACCCC
CTCTTCCCCCGTGCCCCGTTACAGGATATGTTCTACGAAAAAGCGGATGC
GCTGGTGGGGATCTGCCGTGACCACGCCACCAATAGCTCGCGCACGCTTA
CCCTTGACCTTGAGGCTGTCGGAGAAGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10169:4787..5968-

>mRNA_Ecto-sp13_S_contig10169.197.1 ID=mRNA_Ecto-sp13_S_contig10169.197.1|Name=mRNA_Ecto-sp13_S_contig10169.197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:4787..5968- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAAACGCCTTCCTGAGCCTCGACAACCCGGAGGAGCCGTACCTTGG
AGGAGTCAAGTTCAACGCCATGCCCCCAATGAAGCGCTTCCGCGACATGG
AGCAGCTGTCGGGCGGCGAGAAGACGGTGGCGGCGCTCGGCCTCCTTTTC
GCGATACACAGCTTCCGTCCGGCACCGTTTTTTGTCATGGACGAGATTGA
CGCTGCCCTAGACAACATCAACGTGAAGAAGGTGTGCAACTACATCCAGG
GGAGGAGCGGCGACTTCCAATCCATCGTCATCTCCCTCAAGGATATGTTC
TACGAAAAAGCGGATGCGCTGGTGGGGATCTGCCGTGACCACGCCACCAA
TAGCTCGCGCACGCTTACCCTTGACCTTGAGGCTGTCGGAGAAGCGTGA
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