mRNA_Ecto-sp13_S_contig834.19702.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig834.19702.1
Unique NamemRNA_Ecto-sp13_S_contig834.19702.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig834.19702.1 vs. uniprot
Match: A0A6H5KLT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.060e-23
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 2 
Query:  116 MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDTSSSVDPAPEPTPAVAEIDPSDEPPSDTPXXXXXXXXXXXXXXXXXVEQEEDTPAPVDDESV 421
            MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDT SS+DPAPEPTPAVAEID SD       XXXXXXXXXXXX XXXXVE+E+DT APV++ESV
Sbjct:    1 MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDTGSSLDPAPEPTPAVAEIDASDXXXXXXXXXXXXXXXXXXXPXXXXVEEEQDTLAPVENESV 102
[Close]
BLAST of mRNA_Ecto-sp13_S_contig834.19702.1 vs. uniprot
Match: D8LB64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB64_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.800e-16
Identity = 54/63 (85.71%), Postives = 56/63 (88.89%), Query Frame = 2 
Query:  116 MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDTSSSVDPAPEPTPAVAEIDPSDE 304
            MRLLRWRCALLIATLAASN+VSPANSQDSS TSAGDDVEDTSSS DPA     AVAEIDPSD+
Sbjct:    1 MRLLRWRCALLIATLAASNVVSPANSQDSSLTSAGDDVEDTSSSSDPAXXXXXAVAEIDPSDD 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig834.19702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLT6_9PHAE4.060e-2384.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB64_ECTSI4.800e-1685.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig834contigEcto-sp13_S_contig834:16206..21196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.4
Seed ortholog evalue4.6e-16
Seed eggNOG ortholog2880.D8LB64
Model size1224
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.sensory perception of sound
EggNOG OGsKOG1216@1,KOG1216@2759
Cds size1107
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464104.141702-UTR-Ecto-sp13_S_contig834:16205..163201681464104.141702-UTR-Ecto-sp13_S_contig834:16205..16320Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig834 16206..16320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464104.1605072-CDS-Ecto-sp13_S_contig834:16320..166831681464104.1605072-CDS-Ecto-sp13_S_contig834:16320..16683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig834 16321..16683 +
1681464104.1732385-CDS-Ecto-sp13_S_contig834:19377..199381681464104.1732385-CDS-Ecto-sp13_S_contig834:19377..19938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig834 19378..19938 +
1681464104.181973-CDS-Ecto-sp13_S_contig834:21013..211961681464104.181973-CDS-Ecto-sp13_S_contig834:21013..21196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig834 21014..21196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig834.19702.1prot_Ecto-sp13_S_contig834.19702.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig834 16321..21196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig834.19702.1

>prot_Ecto-sp13_S_contig834.19702.1 ID=prot_Ecto-sp13_S_contig834.19702.1|Name=mRNA_Ecto-sp13_S_contig834.19702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=369bp
MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDTSSSVDPAPE
PTPAVAEIDPSDEPPSDTPSPVEEEEEEEDEPTPSPVEQEEDTPAPVDDE
SVDTPAPSAEEEDAPETPAPVEEEEEEETPSPVEDIEETPQPTPGEEEAE
ETLAPVEETPSPVGEVEETPAPVAEVEETPEPTLQEEEEETPAPAEETPF
SVEEVEETPAPVEEVEETPRPTPEEEEETPAPEEETPSPVEEVEETPQPT
PAEEEAEETPAPVEETPSPVEEVEETPAPVEEVGETPRPTPEEEEETPAP
AEETPSPVEDAQEEEAETTAPEAATLEPAEAATPAPTEAESLEPTEPATP
EPTVRWTYAPADPWTESPG
back to top

mRNA from alignment at Ecto-sp13_S_contig834:16206..21196+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig834.19702.1 ID=mRNA_Ecto-sp13_S_contig834.19702.1|Name=mRNA_Ecto-sp13_S_contig834.19702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4991bp|location=Sequence derived from alignment at Ecto-sp13_S_contig834:16206..21196+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCGCCCCTGCCGGTGCGTTTGGGACCTTGATCCACAGCATATCCACAG
CACCGTCGAAGTGATAGCGGTCTCGCTGCGAGGACGAGAGCAGTCGGCGG
GATCGAAGAACAGCGATGCGGTTGCTGAGATGGCGCTGCGCTCTTTTGAT
CGCAACGCTGGCCGCCAGCAATCTTGTCAGCCCAGCAAACAGTCAAGACT
CATCTCCCACTTCGGCCGGCGATGATGTTGAGGACACAAGCAGCAGCGTG
GACCCAGCCCCGGAGCCGACGCCTGCCGTTGCGGAGATAGACCCTTCCGA
TGAACCCCCTTCAGATACTCCGAGCCCTGTAGAGGAGGAGGAAGAGGAAG
AGGATGAGCCCACCCCGAGTCCGGTCGAGCAGGAGGAAGATACCCCGGCT
CCTGTGGACGATGAGTCTGTCGACACACCCGCACCTTCGGCAGAGGAGGA
GGACGCACCCGAGACCCCAGCCCCGGTGGTGAGTTACAGATATACAGACT
TACTGGACATGCACGTCAGCCTCTCTTCGTGATCGGACGGACGTTGCATC
ATTCATATCGCTGATCGTGTATTCTACATAGGGCCACGCTCGCTCACGAT
CCCCTCAACTGCGGCGGCGAATGCTGTCTGTACACTATCCTTTTCGGGGA
AGTTGGCGCGCCAAACAAATGCATAGGCTGAGATTGAGGTAGACGGGTTC
CTTTTCACTCGCGGAACGAACACCCGGTTCCTCGCGAACAAGCGCACGGT
CCTTCGGTCTGCTTCAAGTACAAGGCAGTACTGCTGGGTCAGGGATGGAT
GCAAGCACTAACGGAATGTACGCATACGGCAGCCCATGTAAACAACTTTT
GTGATGACCCAGCAATCAACCCTAAAAATGGCACAAGAGAAAAACCGGTA
GTCTATACACAAGTCTATATGCGCCCGAGGGGATCCGAGGTTGCGTGAAA
TCAGTTACCAGGAAGGGAATAGAGACCTCTGTCGCTCCTTCTATCTTTCT
CCCCTGCTAGGTATGCATCGACCTCCCCCGGCCCCATTGTAGCGACCCCC
GGAGTTGTGTCTGACGAAGGGAACAAAAACGGGAACAGGAACGGATGGAT
GGTACGATTTAAAGCCAAATGGCATTTGGCTCATTCTCTCTCGGGAAACA
AGATGTTCGCGCCGGGCGGGTGAACTTATTACTTGGATAGTAGGTCAGAG
AGAGGCAGCCAGGCAGGTGCCCGCTATCTTCCGCTACCAGCAGCGGTAGG
CACGCTTTGGGTATTTGCTGCCGCAGTGTCCATGCGGGCGCACCAACATG
CAGTAGTTGCTAGGAAATGGGTCACCATTAATCAAAACCAAGTAAGACCG
GTACGTGAGTACGAATTGGCCAGTCTTGTGTGTATCGACCTCATTAGCTG
CGCAGTTAATGAGGAGGCATTGTTGTGCCAGGACCCATTCTTTTCAAGTT
TAATTTTCCTCGAGTTTTCGTACTATTTGCACGAGAGAGGAACAACGGGT
AGCTCACACTGACAGGCGCTCGCTCACGCATGCATGCACTGGCATGATGA
GCGCGACTTCAACTCCCCGGCAAGTTCGTTGATGAATGAAGCAAATGTGA
TGACCGAGAATAGTCTACCGGAGATGATTTACATACTGCTCTAGACGTGA
AATTCGCAAAATCGGATGTCACTGCTGCTGCTGCGGAATCTCACCAATCC
AATATGTTACCAACAAGACGCGGACGTGCAGCTTATTGGGCGCACCAGCC
GGGGTCGCGCAGAATGGTAGGTATACATTTCGTTGCCTTGATGTGCATAC
GCCGCAGAATCATTATCGGGATACGCCCATGTTTTTGTGGAATCAGGCGC
CCAACATGCCATTGAAGAACAGAGTTTTCTATGTTGGTGTGCCAGCAAGC
CTCTGCACGTACAATGTGCCTCCACGCCCGAAGGGATCTCACAACTCATC
ACACTACATGTTCCGCACGGTACACACTCCACGAACGACGGCGCAACATG
ACGAGACAGCAGCCTCACTGTGGTAAAAAATAGGCCGCATGCATTCATTC
ATTCTATCTTGTTTGTGCGGTCGATTTCTTGTCTCGACGGGATATTGAAT
GAAGAAGGCGGTCTCGGTTTTTGGTGTTTTGTATTCGAGAAACCACCGCG
GTGTTGGTTGTATGGACGAAGAGGCGCTAGATGCTGGCGGCAGGTCAATC
GGGTTTGCACAGCTTGCCAACATTTTTTGTCTCCGGGCTCCGCCCGAACG
TCCGAGCTTCCATGAGGGCTGACGAAACCATGAAGAAGCCCGAACAAAAA
CAAACGTTGAGTGAAGCCGAGGCGGCATGATTCAGATGTTGTTTCGTTTT
TTTGTTGTACTGAAAATGAACATTGCTCTACTCCACACACGTGCATTTTA
GTCTTTCATCCGGAGAAATAACGTTGACTCCCCCATGATACTCGGTGAGA
CGGTCCGAGATCATGGCCAAGAGAAGCATTTTGTGTTTTCCACCGCACTG
AAACTGACGTCTTTTCAATGGTCAGCCGGTTAGCAGAGCAGTGGAAATTT
TGAAAAATGCTTCCACAACAACATTCGGTACACACAAGCCCGCGGCAAAT
TGTCGTGAGTACTTCGTCTTACTGGAATGATTGCTCCACACACACATGAC
CAACGTCTCGGTACACACGCCCCCCGTATGATGAACGGTCCATGTCCGCC
TCTGCAAGTCCGAAAATCCAAGAAAACAATCCCAAGTATGACCTATCAAC
CAACCGTTGACTGGTATGATCGTTTTGCCCACAAGCAAAAATTCGTGAAT
TCCGTGCACGACAACGCACACTCGAACGATTTCTCTGCTGATGATGATTG
TTCGAGAACGACACCCGTCAAAATCAACTTCTCGACGACGATCGAGGAAT
GTACGGTACGATGAAACTCTCATGAGAACTCTTTATTCCGAGTCTTATTC
GCACCCCCCCTCCGCAACACGGATTCTGATCCTCACTCAGGCATCCGTTG
CTGAAGCATACTCTACAACAGTGTTGAAGATCGGGTGAAGCGCTCTACGC
GTACTTGAAGATTTTGCACCCTTTGATTGTTTGGTCAATACAAAAAATCT
TCCCCGCGATCCGCTGCCGTTTTCGACACACCTACCTTCCTGTTGTCCGA
AACATCATTCCGGGACAAGCAGGAGGAGGAGGAGGAGGAGGAGACGCCAT
CCCCCGTAGAGGACATCGAAGAGACGCCGCAGCCGACTCCTGGGGAGGAG
GAGGCGGAGGAAACGCTTGCGCCGGTAGAAGAAACACCGTCCCCGGTAGG
GGAAGTCGAGGAAACGCCCGCGCCGGTGGCAGAAGTTGAAGAAACGCCTG
AGCCGACTCTACAGGAGGAGGAGGAGGAAACGCCTGCACCGGCAGAGGAA
ACACCGTTCTCGGTAGAGGAAGTCGAGGAAACGCCCGCGCCGGTGGAAGA
AGTTGAAGAGACGCCGCGGCCGACTCCGGAGGAGGAGGAGGAAACGCCTG
CGCCGGAAGAGGAAACGCCGTCCCCAGTGGAAGAAGTCGAGGAGACACCG
CAGCCGACTCCGGCGGAGGAAGAGGCAGAGGAAACGCCTGCGCCGGTAGA
GGAAACACCGTCCCCGGTAGAGGAAGTCGAGGAAACGCCCGCGCCGGTGG
AAGAAGTTGGGGAGACGCCGCGGCCGACTCCAGAGGAGGAGGAGGAAACG
CCTGCGCCGGCAGAGGAAACGCCGTCCCCAGTGGTAAGTGTGGTCGATGG
CCCGTACGCACTTCACTTGAGAGACAATATTTAGTTTCTTGCGACAGCTG
TCCATCCATTTAGATTTAGACAAAACCCCGGTGCTTCGTGACGAAAAGTA
GCAATTATAGCTTGCGACACACGTTCACGACGATCGCGCGCTCGCGCGTG
TGTGTACGTGTGCAGTATACACTCGACCGTCGTTCGGTTAGCGTTTAAAG
CTGCTCCCTATGTCCGCCACAGACTCTCGCGAGTAAGAATCTCCCGGCAG
AACGTTCATGAAGTCTTGGTTGACCTTCGTTTTTTTTTTGTCGCTGTCTA
CCTGCTGTCGTACATGTGATTGCGCGATGGTCGAGAAAGGGACTCCTTTC
GTGTGTTCGTATGACAACGCTTTTTTTTTTGTTGGACATGTTGATCACCA
TTTTTTTCACGAGTCGCACTTATTCGTTCACTGGGGCCGCACAAGCGCCA
GAATGTCGTACTACTCTTTTCATAAAACGCCCAGCTTGGTCAGCCAGCCC
CAACCAACACGATCTGAGCGGGTAGGGTCCGGTCTGTTTGTTTGTCTCTC
TGTTGGGCGGTTGCCGTTTGCCGGAGTCTCGACCGCTGCTGCCACTGCCG
TACATTTTTCTCCCTCGAAATCGAGGTCCCACTTTTTCCGTGGCTGTATG
GATGGAAATGAGGATCAGCGTGTCACCAAAGCAGTAGGACATGGACGTTA
CACTCTACATGCTTTGCCACGCCGTAACGGAGCTCAATTGGTTGGGAGCC
GGTTGAGCTATCTACAACGGGTGCTTCCGGTGTTGTTTTTTTTTGCTTCG
AACTTTTCCACAAGCCCCGGTTCGCCCGAAATCGGCGGAGGGGTTGAACA
ACCGCCGAAAGGTGTTTTGTTCCCTCTCCCTCTTTCTCACACGACGCTAC
AAGCGTCAACAAAGAATTTACCTCGAACGGGTAGTCTCTCTTTGATTGTG
AAAAAACAATTATCAAGAAAAATCTTCCTTGTCCTTTCTTGCTCATTTTT
CATTTCCGTGTTGTTTTTCCCTACCACCCTCTGCCATTGCCCCTCGAAAT
AAACGCAGGAGGACGCACAGGAGGAAGAGGCGGAGACGACAGCGCCCGAG
GCTGCTACCCTGGAGCCCGCGGAAGCGGCGACGCCTGCGCCAACCGAGGC
AGAATCCCTGGAGCCCACGGAGCCGGCCACGCCGGAGCCCACGGTGCGAT
GGACTTACGCCCCCGCGGACCCTTGGACCGAGTCGCCAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig834:16206..21196+

>mRNA_Ecto-sp13_S_contig834.19702.1 ID=mRNA_Ecto-sp13_S_contig834.19702.1|Name=mRNA_Ecto-sp13_S_contig834.19702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1107bp|location=Sequence derived from alignment at Ecto-sp13_S_contig834:16206..21196+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTTGCTGAGATGGCGCTGCGCTCTTTTGATCGCAACGCTGGCCGC
CAGCAATCTTGTCAGCCCAGCAAACAGTCAAGACTCATCTCCCACTTCGG
CCGGCGATGATGTTGAGGACACAAGCAGCAGCGTGGACCCAGCCCCGGAG
CCGACGCCTGCCGTTGCGGAGATAGACCCTTCCGATGAACCCCCTTCAGA
TACTCCGAGCCCTGTAGAGGAGGAGGAAGAGGAAGAGGATGAGCCCACCC
CGAGTCCGGTCGAGCAGGAGGAAGATACCCCGGCTCCTGTGGACGATGAG
TCTGTCGACACACCCGCACCTTCGGCAGAGGAGGAGGACGCACCCGAGAC
CCCAGCCCCGGTGGAGGAGGAGGAGGAGGAGGAGACGCCATCCCCCGTAG
AGGACATCGAAGAGACGCCGCAGCCGACTCCTGGGGAGGAGGAGGCGGAG
GAAACGCTTGCGCCGGTAGAAGAAACACCGTCCCCGGTAGGGGAAGTCGA
GGAAACGCCCGCGCCGGTGGCAGAAGTTGAAGAAACGCCTGAGCCGACTC
TACAGGAGGAGGAGGAGGAAACGCCTGCACCGGCAGAGGAAACACCGTTC
TCGGTAGAGGAAGTCGAGGAAACGCCCGCGCCGGTGGAAGAAGTTGAAGA
GACGCCGCGGCCGACTCCGGAGGAGGAGGAGGAAACGCCTGCGCCGGAAG
AGGAAACGCCGTCCCCAGTGGAAGAAGTCGAGGAGACACCGCAGCCGACT
CCGGCGGAGGAAGAGGCAGAGGAAACGCCTGCGCCGGTAGAGGAAACACC
GTCCCCGGTAGAGGAAGTCGAGGAAACGCCCGCGCCGGTGGAAGAAGTTG
GGGAGACGCCGCGGCCGACTCCAGAGGAGGAGGAGGAAACGCCTGCGCCG
GCAGAGGAAACGCCGTCCCCAGTGGAGGACGCACAGGAGGAAGAGGCGGA
GACGACAGCGCCCGAGGCTGCTACCCTGGAGCCCGCGGAAGCGGCGACGC
CTGCGCCAACCGAGGCAGAATCCCTGGAGCCCACGGAGCCGGCCACGCCG
GAGCCCACGGTGCGATGGACTTACGCCCCCGCGGACCCTTGGACCGAGTC
GCCAGGT
back to top